Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Reverse (-)

28231828 .. 28232835

Gene Structure 1008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG233100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGCCTCATTCTTGTGGGGGTGAAGATAGCGTCGATGGATATGCCCTAACTTTGATTGATGCTTTAGAGACACTAGCTTTACTTGGTGATTGGGACGGCTTTGCTGCCTCTGTTGAATGGATTGGTAAAAACCTTCAGTTTAAAATAAATAAGACGGTATCTGTTTTTGAGGGGGCTGTAGCCAGAGGCCAAAATGTCAACAACATTTATGGGCTGGTTGCAGATGAACTTGTAGAAGAGTTTTCTGACCCTATCAATGGCGTTACATCCCCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006491 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015923 GO:0015924 GO:0016787 GO:0016798 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0071704 GO:1901135 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

92

Amino Acids

9.8

Weight (kDa)

4.05

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_47	PF01532	1 - 57	2.5e-12	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	1 cut(s)	116
AluBI	AGCT	1 cut(s)	77
AluI	AGCT	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	62
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	32, 98
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	112
BcgI	CGANNNNNNTGC	2 cut(s)	23, 57
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	177
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
BmsI	GCATC	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseXI	GCAGC	1 cut(s)	91
BshFI	GGCC	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	266
BstMAI	GTCTC	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	266
CseI	GACGC	1 cut(s)	19
CviJI	RGCY	6 cut(s)	77, 99, 176, 182, 189, 214
CviKI_1	RGCY	6 cut(s)	77, 99, 176, 182, 189, 214
DraI	TTTAAA	1 cut(s)	142
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	119
FaiI	YATR	2 cut(s)	42, 210
FaqI	GGGAC	1 cut(s)	107
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	1 cut(s)	253
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	74
GluI	GCNGC	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	189
HgaI	GACGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HphI	GGTGA	2 cut(s)	32, 98
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	247
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	1 cut(s)	221
LpnPI	CCDG	2 cut(s)	196, 200
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	262
MboII	GAAGA	2 cut(s)	35, 248
MnlI	CCTC	4 cut(s)	15, 118, 163, 179
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	105
SetI	ASST	2 cut(s)	79, 135
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	177
SgeI	CNNG	6 cut(s)	24, 86, 95, 195, 227, 242
SmiMI	CAYNNNNRTG	1 cut(s)	12
SspMI	CTAG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	33
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	240
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.