Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Forward (+)

16726176 .. 16728708

Gene Structure 2533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023019

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAAGCTCACTTTCGTGACGAAAGAGATTGATGTAACGGAATGGAAAGGGGACCTGCTTGCGATTGGTGTTACAGAGAAGGACTTGAGAAAAGATCAGAACTCGAAATTCAAAAATCCGATATTGAAGAAGCTGGATTCTTGTTTGGGTGGGGTGTTGGCTGAGGTCTCGACTAAGGAGGACTTCACAGGAAATGGTGGCTACAACATCAAGACAGGACCTGGCTATTCAATTGAGTTTATGAAGGTTGATATGGGAGGTTCAGCAGCTGTATTAGGTGCAGCAAAAGCCATTGGTCAAATCAAACCTTCTGGTGTAGAGGTTCATTTCATTGTCACAGCATGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGGGACATTGTCACAGCTTCTAATGGAAAGACCATTGAGGTCAATAACACAGATGCTGAAGGCAGACTGACTTTGGCAGATGCATTAGTATATGCATCTGGGATTTCGCATGTCAGGGAAATGTTTTATCATGCATTTAATGGGTACATGGACCATGCTTTCTCACTTGATGAATTAAGGCCTCATTCTTGTGGGGGTGAAGATAGCCTCGGTGGATATGCCCTAACTTTGAATAAGACAATATCTGTTTTTGAGGGGGCTGTAGCCAAAGGCCAAAATGTCAACAACATTTATGGGCCGGTTGTAGATGAACTTGTACAAGAGTTTTCTGACCCTATCAACGGCGTTACATCCCCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

247

Amino Acids

26.23

Weight (kDa)

5.06

Isoelectric Point (pI)

28.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17	PF00883	66 - 159	1.3e-36	Cytosol aminopeptidase family, catalytic domain
Glyco_hydro_47	PF01532	167 - 203	2.1e-06	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	1 cut(s)	456
AfaI	GTAC	2 cut(s)	524, 696
AfiI	CCNNNNNNNGG	1 cut(s)	719
AgsI	TTSAA	4 cut(s)	112, 127, 231, 610
AjnI	CCWGG	2 cut(s)	220, 376
AleI	CACNNNNGTG	1 cut(s)	14
AluBI	AGCT	4 cut(s)	7, 133, 269, 395
AluI	AGCT	4 cut(s)	7, 133, 269, 395
Alw26I	GTCTC	1 cut(s)	172
AlwNI	CAGNNNCTG	3 cut(s)	221, 269, 434
AoxI	GGCC	4 cut(s)	374, 557, 649, 674
ApeKI	GCWGC	2 cut(s)	266, 281
ApoI	RAATTY	1 cut(s)	107
AspS9I	GGNCC	4 cut(s)	52, 218, 529, 674
AsuHPI	GGTGA	1 cut(s)	587
AvaII	GGWCC	3 cut(s)	52, 218, 529
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	278, 293
BceAI	ACGGC	1 cut(s)	736
BciT130I	CCWGG	2 cut(s)	222, 378
BcoDI	GTCTC	1 cut(s)	172
BfmI	CTRYAG	1 cut(s)	639
BfuAI	ACCTGC	1 cut(s)	63
BisI	GCNGC	2 cut(s)	267, 282
BlsI	GCNGC	2 cut(s)	268, 283
Bme1390I	CCNGG	2 cut(s)	222, 378
Bme18I	GGWCC	3 cut(s)	52, 218, 529
BmgT120I	GGNCC	4 cut(s)	52, 218, 529, 674
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	2 cut(s)	222, 378
BmsI	GCATC	3 cut(s)	421, 448, 482
Bpu10I	CCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	172
BsaJI	CCNNGG	2 cut(s)	377, 586
Bsc4I	CCNNNNNNNGG	1 cut(s)	719
Bse118I	RCCGGY	1 cut(s)	676
BseBI	CCWGG	2 cut(s)	222, 378
BseDI	CCNNGG	2 cut(s)	377, 586
BseGI	GGATG	1 cut(s)	728
BseLI	CCNNNNNNNGG	1 cut(s)	719
BseMII	CTCAG	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	278, 293
BsgI	GTGCAG	1 cut(s)	300
BshFI	GGCC	4 cut(s)	376, 559, 651, 676
BsiSI	CCGG	1 cut(s)	677
BslFI	GGGAC	2 cut(s)	65, 395
BslI	CCNNNNNNNGG	1 cut(s)	719
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	2 cut(s)	65, 395
BsnI	GGCC	4 cut(s)	376, 559, 651, 676
Bso31I	GGTCTC	1 cut(s)	172
Bsp1407I	TGTACA	1 cut(s)	694
Bsp143I	GATC	1 cut(s)	94
BspANI	GGCC	4 cut(s)	376, 559, 651, 676
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	53
BspMI	ACCTGC	1 cut(s)	63
BspTNI	GGTCTC	1 cut(s)	172
BsrFI	RCCGGY	1 cut(s)	676
BsrGI	TGTACA	1 cut(s)	694
BssAI	RCCGGY	1 cut(s)	676
BssECI	CCNNGG	2 cut(s)	377, 586
BssMI	GATC	1 cut(s)	94
Bst2UI	CCWGG	2 cut(s)	222, 378
BstAUI	TGTACA	1 cut(s)	694
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	2 cut(s)	162, 174
BstF5I	GGATG	1 cut(s)	728
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	2 cut(s)	222, 378
BstNSI	RCATGY	2 cut(s)	345, 491
BstSCI	CCNGG	2 cut(s)	220, 376
BstSFI	CTRYAG	1 cut(s)	639
BstV1I	GCAGC	2 cut(s)	278, 293
BsuRI	GGCC	4 cut(s)	376, 559, 651, 676
BtsCI	GGATG	1 cut(s)	728
BveI	ACCTGC	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	60
CaiI	CAGNNNCTG	3 cut(s)	221, 269, 434
Cfr10I	RCCGGY	1 cut(s)	676
Cfr13I	GGNCC	4 cut(s)	52, 218, 529, 674
Csp6I	GTAC	2 cut(s)	523, 695
CviAII	CATG	5 cut(s)	342, 488, 509, 526, 533
CviQI	GTAC	2 cut(s)	523, 695
DdeI	CTNAG	2 cut(s)	162, 174
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eco147I	AGGCCT	2 cut(s)	376, 559
Eco31I	GGTCTC	1 cut(s)	172
Eco47I	GGWCC	3 cut(s)	52, 218, 529
Eco57I	CTGAAG	1 cut(s)	456
EcoO109I	RGGNCCY	2 cut(s)	52, 218
EcoRII	CCWGG	2 cut(s)	220, 376
EcoT22I	ATGCAT	3 cut(s)	463, 475, 514
FaeI	CATG	5 cut(s)	345, 491, 512, 529, 536
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	2 cut(s)	65, 395
FatI	CATG	5 cut(s)	341, 487, 508, 525, 532
Fnu4HI	GCNGC	2 cut(s)	267, 282
FokI	GGATG	1 cut(s)	715
Fsp4HI	GCNGC	2 cut(s)	267, 282
GluI	GCNGC	2 cut(s)	267, 282
HaeIII	GGCC	4 cut(s)	376, 559, 651, 676
HapII	CCGG	1 cut(s)	677
Hin1II	CATG	5 cut(s)	345, 491, 512, 529, 536
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	1 cut(s)	677
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	3 cut(s)	99, 120, 709
Hpy188III	TCNNGA	3 cut(s)	16, 169, 211
Hpy8I	GTNNAC	1 cut(s)	661
HpyAV	CCTTC	4 cut(s)	73, 238, 318, 431
HpyCH4V	TGCA	4 cut(s)	281, 461, 473, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	2 cut(s)	162, 174
Hsp92II	CATG	5 cut(s)	345, 491, 512, 529, 536
Kzo9I	GATC	1 cut(s)	94
Lsp1109I	GCAGC	2 cut(s)	278, 293
LweI	GCATC	3 cut(s)	421, 448, 482
MaeIII	GTNAC	6 cut(s)	16, 34, 70, 334, 388, 724
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	2 cut(s)	139, 590
MfeI	CAATTG	1 cut(s)	231
MluCI	AATT	3 cut(s)	107, 231, 551
MnlI	CCTC	9 cut(s)	157, 172, 251, 313, 366, 409, 570, 596, 625
Mph1103I	ATGCAT	3 cut(s)	463, 475, 514
MseI	TTAA	2 cut(s)	516, 554
MslI	CAYNNNNRTG	2 cut(s)	14, 567
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	1 cut(s)	677
MspR9I	CCNGG	2 cut(s)	222, 378
MunI	CAATTG	1 cut(s)	231
MvaI	CCWGG	2 cut(s)	222, 378
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	5 cut(s)	345, 491, 512, 529, 536
NlaIV	GGNNCC	1 cut(s)	53
NmuCI	GTSAC	3 cut(s)	16, 334, 388
NsiI	ATGCAT	3 cut(s)	463, 475, 514
NspI	RCATGY	2 cut(s)	345, 491
OliI	CACNNNNGTG	1 cut(s)	14
PceI	AGGCCT	2 cut(s)	376, 559
PfeI	GAWTC	1 cut(s)	137
PflFI	GACNNNGTC	1 cut(s)	386
PkrI	GCNGC	2 cut(s)	268, 283
PpuMI	RGGWCCY	2 cut(s)	52, 218
Psp5II	RGGWCCY	2 cut(s)	52, 218
Psp6I	CCWGG	2 cut(s)	220, 376
PspGI	CCWGG	2 cut(s)	220, 376
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	4 cut(s)	52, 218, 529, 674
PspPPI	RGGWCCY	2 cut(s)	52, 218
PstNI	CAGNNNCTG	3 cut(s)	221, 269, 434
PsyI	GACNNNGTC	1 cut(s)	386
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	2 cut(s)	524, 696
RsaNI	GTAC	2 cut(s)	523, 695
RseI	CAYNNNNRTG	2 cut(s)	14, 567
SaqAI	TTAA	2 cut(s)	516, 554
SatI	GCNGC	2 cut(s)	267, 282
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	4 cut(s)	52, 218, 529, 674
ScrFI	CCNGG	2 cut(s)	222, 378
SfaNI	GCATC	3 cut(s)	421, 448, 482
SfcI	CTRYAG	1 cut(s)	639
SinI	GGWCC	3 cut(s)	52, 218, 529
SmiMI	CAYNNNNRTG	2 cut(s)	14, 567
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	3 cut(s)	107, 231, 551
SseBI	AGGCCT	2 cut(s)	376, 559
StuI	AGGCCT	2 cut(s)	376, 559
StyD4I	CCNGG	2 cut(s)	220, 376
TaqI	TCGA	2 cut(s)	104, 170
TasI	AATT	3 cut(s)	107, 231, 551
TatI	WGTACW	1 cut(s)	694
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	516, 554
Tru9I	TTAA	2 cut(s)	516, 554
TseFI	GTSAC	3 cut(s)	16, 334, 388
TseI	GCWGC	2 cut(s)	266, 281
Tsp45I	GTSAC	3 cut(s)	16, 334, 388
TspDTI	ATGAA	6 cut(s)	17, 257, 314, 319, 564, 702
TspGWI	ACGGA	1 cut(s)	53
Tth111I	GACNNNGTC	1 cut(s)	386
VpaK11BI	GGWCC	3 cut(s)	52, 218, 529
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	2 cut(s)	345, 491
Zsp2I	ATGCAT	3 cut(s)	463, 475, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.