Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001814.1

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Forward (+)

90028 .. 92022

Gene Structure 1995 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001814.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgctgacggagagttcgcgtcttgggtcagttctcaacctctttttgcttggtttctgttttgggcttctagtttttactggtagattggcacaggcctctggcctcgccagtgtgcgtggcggcggtcggggattcggatccggcagtagggttgttgaccctctgggtttggggatggagactgtgggaatacaggctcgggtgttgatcttcttcatggaattgggcatgcgagctttgtgtttgtggtggtgggtgatgtgtggtcaacgacgattggggtccggtatcggtggcgacgtgacgaccctagtggtggctcttgtttggagctcaattcatggccttgtttttggtgacaggtctgttcagattgttgtaacagaatggaaaggggacctgcttgcggttggtgttacagagaaggacttgaggaaagatcagaactcgaaattcgaaaatctgatattgaagaagctggattcttgtttgggtggggtgttggctgaggtctcgactaaggaggacttcacaggaaagtctggccagtctacggttattaggcttcctggtcttggctcgaagagggttggcttgtttgggcttggacaatctgcttttgacagtggtggctacaacatcaagacaggacctggctgttcaattgagcttctgaaggttgatatgggaggttcagcagctgtattaggtgcagcaaaagccattggtcaaatcaaaccttctgcttgtgagaatatgattagtggaacaggtatgagacctggggacattgtcacagcttctaatggaaagaccattgaggtcaataacacagatgttgaaggcagactgactttggcagatgcattaatatatgcatctgggatttcatatgttctggatcttatgtcaaaatcagacttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

309

Amino Acids

32.45

Weight (kDa)

8.51

Isoelectric Point (pI)

28.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	411
AccI	GTMKAC	1 cut(s)	554
AccII	CGCG	1 cut(s)	19
AciI	CCGC	3 cut(s)	123, 126, 410
AclWI	GGATC	3 cut(s)	135, 148, 912
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	698
AfiI	CCNNNNNNNGG	5 cut(s)	150, 319, 409, 556, 578
AgsI	TTSAA	3 cut(s)	475, 666, 845
AjiI	CACGTC	1 cut(s)	304
AjnI	CCWGG	3 cut(s)	571, 655, 784
AluBI	AGCT	6 cut(s)	239, 336, 481, 673, 704, 803
AluI	AGCT	6 cut(s)	239, 336, 481, 673, 704, 803
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	3 cut(s)	176, 520, 775
AlwI	GGATC	3 cut(s)	135, 148, 912
AlwNI	CAGNNNCTG	2 cut(s)	656, 704
Ama87I	CYCGRG	1 cut(s)	201
AoxI	GGCC	4 cut(s)	96, 103, 346, 547
ApeKI	GCWGC	2 cut(s)	701, 716
ApoI	RAATTY	1 cut(s)	455
ArsI	GACNNNNNNTTYG	1 cut(s)	30
AseI	ATTAAT	1 cut(s)	872
AspS9I	GGNCC	3 cut(s)	285, 400, 653
AsuHPI	GGTGA	2 cut(s)	271, 371
AsuII	TTCGAA	1 cut(s)	459
AvaI	CYCGRG	1 cut(s)	201
AvaII	GGWCC	3 cut(s)	285, 400, 653
BalI	TGGCCA	1 cut(s)	549
BamHI	GGATCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	338
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	713, 728
BccI	CCATC	1 cut(s)	172
BciT130I	CCWGG	3 cut(s)	573, 657, 786
BcoDI	GTCTC	3 cut(s)	176, 520, 775
BfaI	CTAG	2 cut(s)	71, 314
BfuAI	ACCTGC	1 cut(s)	411
BisI	GCNGC	3 cut(s)	124, 702, 717
BlsI	GCNGC	3 cut(s)	125, 703, 718
Bme1390I	CCNGG	3 cut(s)	573, 657, 786
Bme18I	GGWCC	3 cut(s)	285, 400, 653
BmeT110I	CYCGRG	1 cut(s)	201
BmgBI	CACGTC	1 cut(s)	304
BmgT120I	GGNCC	3 cut(s)	285, 400, 653
BmiI	GGNNCC	3 cut(s)	142, 286, 401
BmrFI	CCNGG	3 cut(s)	573, 657, 786
BmsI	GCATC	2 cut(s)	856, 890
Bpu10I	CCTNAGC	1 cut(s)	510
Bpu14I	TTCGAA	1 cut(s)	459
BpuEI	CTTGAG	1 cut(s)	454
BsaBI	GATNNNNATC	1 cut(s)	139
BsaI	GGTCTC	2 cut(s)	520, 775
BsaJI	CCNNGG	1 cut(s)	785
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	5 cut(s)	150, 319, 409, 556, 578
Bse1I	ACTGG	3 cut(s)	85, 111, 550
Bse8I	GATNNNNATC	1 cut(s)	139
BseBI	CCWGG	3 cut(s)	573, 657, 786
BseDI	CCNNGG	1 cut(s)	785
BseGI	GGATG	1 cut(s)	183
BseJI	GATNNNNATC	1 cut(s)	139
BseLI	CCNNNNNNNGG	5 cut(s)	150, 319, 409, 556, 578
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	3 cut(s)	85, 111, 550
BseXI	GCAGC	2 cut(s)	713, 728
BsgI	GTGCAG	1 cut(s)	735
Bsh1236I	CGCG	1 cut(s)	19
Bsh1285I	CGRYCG	1 cut(s)	130
BshFI	GGCC	4 cut(s)	98, 105, 348, 549
BsiEI	CGRYCG	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	338
BsiHKCI	CYCGRG	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	144, 288
BslFI	GGGAC	2 cut(s)	413, 803
BslI	CCNNNNNNNGG	5 cut(s)	150, 319, 409, 556, 578
BsmAI	GTCTC	3 cut(s)	176, 520, 775
BsmFI	GGGAC	2 cut(s)	413, 803
BsnI	GGCC	4 cut(s)	98, 105, 348, 549
Bso31I	GGTCTC	2 cut(s)	520, 775
BsoBI	CYCGRG	1 cut(s)	201
Bsp119I	TTCGAA	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	4 cut(s)	140, 210, 442, 904
BspACI	CCGC	3 cut(s)	123, 126, 410
BspANI	GGCC	4 cut(s)	98, 105, 348, 549
BspCNI	CTCAG	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	19
BspLI	GGNNCC	3 cut(s)	142, 286, 401
BspMI	ACCTGC	1 cut(s)	411
BspPI	GGATC	3 cut(s)	135, 148, 912
BspT104I	TTCGAA	1 cut(s)	459
BspTNI	GGTCTC	2 cut(s)	520, 775
BsrI	ACTGG	3 cut(s)	85, 111, 550
BssECI	CCNNGG	1 cut(s)	785
BssMI	GATC	4 cut(s)	140, 210, 442, 904
Bst2UI	CCWGG	3 cut(s)	573, 657, 786
Bst4CI	ACNGT	3 cut(s)	187, 559, 629
Bst6I	CTCTTC	1 cut(s)	581
BstBI	TTCGAA	1 cut(s)	459
BstC8I	GCNNGC	3 cut(s)	233, 237, 408
BstDEI	CTNAG	2 cut(s)	510, 522
BstF5I	GGATG	1 cut(s)	183
BstFNI	CGCG	1 cut(s)	19
BstKTI	GATC	4 cut(s)	143, 213, 445, 907
BstMAI	GTCTC	3 cut(s)	176, 520, 775
BstMBI	GATC	4 cut(s)	140, 210, 442, 904
BstMCI	CGRYCG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	722
BstNI	CCWGG	3 cut(s)	573, 657, 786
BstNSI	RCATGY	1 cut(s)	235
BstSCI	CCNGG	3 cut(s)	571, 655, 784
BstUI	CGCG	1 cut(s)	19
BstV1I	GCAGC	2 cut(s)	713, 728
BstX2I	RGATCY	2 cut(s)	140, 904
BstYI	RGATCY	2 cut(s)	140, 904
BsuRI	GGCC	4 cut(s)	98, 105, 348, 549
BtrI	CACGTC	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	118, 634
BveI	ACCTGC	1 cut(s)	411
Cac8I	GCNNGC	3 cut(s)	233, 237, 408
CaiI	CAGNNNCTG	2 cut(s)	656, 704
Cfr13I	GGNCC	3 cut(s)	285, 400, 653
CseI	GACGC	1 cut(s)	8
CviAII	CATG	3 cut(s)	220, 232, 344
DdeI	CTNAG	2 cut(s)	510, 522
DpnI	GATC	4 cut(s)	142, 212, 444, 906
DpnII	GATC	4 cut(s)	140, 210, 442, 904
EaeI	YGGCCR	1 cut(s)	547
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
Ecl136II	GAGCTC	1 cut(s)	336
Eco147I	AGGCCT	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	338
Eco31I	GGTCTC	2 cut(s)	520, 775
Eco47I	GGWCC	3 cut(s)	285, 400, 653
Eco53kI	GAGCTC	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	698
Eco88I	CYCGRG	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	336
EcoO109I	RGGNCCY	2 cut(s)	400, 653
EcoRII	CCWGG	3 cut(s)	571, 655, 784
EcoT22I	ATGCAT	2 cut(s)	871, 883
EcoT38I	GRGCYC	1 cut(s)	338
FaeI	CATG	3 cut(s)	223, 235, 347
FalI	AAGNNNNNCTT	2 cut(s)	515, 547
FaqI	GGGAC	2 cut(s)	413, 803
FatI	CATG	3 cut(s)	219, 231, 343
FauNDI	CATATG	1 cut(s)	895
FblI	GTMKAC	1 cut(s)	554
Fnu4HI	GCNGC	3 cut(s)	124, 702, 717
FokI	GGATG	1 cut(s)	190
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	3 cut(s)	124, 702, 717
FspBI	CTAG	2 cut(s)	71, 314
GluI	GCNGC	3 cut(s)	124, 702, 717
HaeIII	GGCC	4 cut(s)	98, 105, 348, 549
HapII	CCGG	2 cut(s)	144, 288
HgaI	GACGC	1 cut(s)	8
Hin1II	CATG	3 cut(s)	223, 235, 347
HincII	GTYRAC	2 cut(s)	160, 272
HindII	GTYRAC	2 cut(s)	160, 272
HinfI	GANTC	2 cut(s)	135, 485
HpaII	CCGG	2 cut(s)	144, 288
HphI	GGTGA	2 cut(s)	271, 371
Hpy166II	GTNNAC	3 cut(s)	160, 272, 555
Hpy188I	TCNGA	6 cut(s)	140, 375, 447, 468, 678, 922
Hpy188III	TCNNGA	3 cut(s)	517, 646, 902
Hpy8I	GTNNAC	3 cut(s)	160, 272, 555
Hpy99I	CGWCG	2 cut(s)	279, 305
HpyAV	CCTTC	4 cut(s)	421, 673, 753, 839
HpyCH4III	ACNGT	3 cut(s)	187, 559, 629
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	3 cut(s)	716, 869, 881
HpyF10VI	GCNNNNNNNGC	1 cut(s)	722
HpyF3I	CTNAG	2 cut(s)	510, 522
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	3 cut(s)	223, 235, 347
Kzo9I	GATC	4 cut(s)	140, 210, 442, 904
LmnI	GCTCC	1 cut(s)	333
Lsp1109I	GCAGC	2 cut(s)	713, 728
LweI	GCATC	2 cut(s)	856, 890
MaeI	CTAG	2 cut(s)	71, 314
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	5 cut(s)	304, 359, 382, 418, 796
MalI	GATC	4 cut(s)	142, 212, 444, 906
MboI	GATC	4 cut(s)	140, 210, 442, 904
MboII	GAAGA	4 cut(s)	205, 208, 487, 598
MfeI	CAATTG	1 cut(s)	666
MflI	RGATCY	2 cut(s)	140, 904
MhlI	GDGCHC	1 cut(s)	338
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	4 cut(s)	224, 339, 455, 666
MluNI	TGGCCA	1 cut(s)	549
Mox20I	TGGCCA	1 cut(s)	549
Mph1103I	ATGCAT	2 cut(s)	871, 883
MscI	TGGCCA	1 cut(s)	549
MseI	TTAA	1 cut(s)	872
Msp20I	TGGCCA	1 cut(s)	549
MspA1I	CMGCKG	1 cut(s)	704
MspI	CCGG	2 cut(s)	144, 288
MspR9I	CCNGG	3 cut(s)	573, 657, 786
MunI	CAATTG	1 cut(s)	666
MvaI	CCWGG	3 cut(s)	573, 657, 786
MvnI	CGCG	1 cut(s)	19
MwoI	GCNNNNNNNGC	1 cut(s)	722
NdeI	CATATG	1 cut(s)	895
NdeII	GATC	4 cut(s)	140, 210, 442, 904
NlaIII	CATG	3 cut(s)	223, 235, 347
NlaIV	GGNNCC	3 cut(s)	142, 286, 401
NmuCI	GTSAC	3 cut(s)	304, 359, 796
NsiI	ATGCAT	2 cut(s)	871, 883
NspI	RCATGY	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	459
PaeI	GCATGC	1 cut(s)	235
PceI	AGGCCT	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	135, 485
PflFI	GACNNNGTC	1 cut(s)	794
PkrI	GCNGC	3 cut(s)	125, 703, 718
PpuMI	RGGWCCY	2 cut(s)	400, 653
PshBI	ATTAAT	1 cut(s)	872
Psp124BI	GAGCTC	1 cut(s)	338
Psp5II	RGGWCCY	2 cut(s)	400, 653
Psp6I	CCWGG	3 cut(s)	571, 655, 784
PspGI	CCWGG	3 cut(s)	571, 655, 784
PspN4I	GGNNCC	3 cut(s)	142, 286, 401
PspPI	GGNCC	3 cut(s)	285, 400, 653
PspPPI	RGGWCCY	2 cut(s)	400, 653
PstNI	CAGNNNCTG	2 cut(s)	656, 704
PsuI	RGATCY	2 cut(s)	140, 904
PsyI	GACNNNGTC	1 cut(s)	794
PvuII	CAGCTG	1 cut(s)	704
SacI	GAGCTC	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	872
SatI	GCNGC	3 cut(s)	124, 702, 717
Sau3AI	GATC	4 cut(s)	140, 210, 442, 904
Sau96I	GGNCC	3 cut(s)	285, 400, 653
ScrFI	CCNGG	3 cut(s)	573, 657, 786
SduI	GDGCHC	1 cut(s)	338
SfaNI	GCATC	2 cut(s)	856, 890
SfuI	TTCGAA	1 cut(s)	459
SinI	GGWCC	3 cut(s)	285, 400, 653
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
SphI	GCATGC	1 cut(s)	235
Sse9I	AATT	4 cut(s)	224, 339, 455, 666
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	3 cut(s)	123, 126, 410
SspMI	CTAG	2 cut(s)	71, 314
SstI	GAGCTC	1 cut(s)	338
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	3 cut(s)	571, 655, 784
TaaI	ACNGT	3 cut(s)	187, 559, 629
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	4 cut(s)	452, 459, 518, 584
TasI	AATT	4 cut(s)	224, 339, 455, 666
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	2 cut(s)	135, 485
Tru1I	TTAA	1 cut(s)	872
Tru9I	TTAA	1 cut(s)	872
TscAI	CASTG	2 cut(s)	118, 634
TseFI	GTSAC	3 cut(s)	304, 359, 796
TseI	GCWGC	2 cut(s)	701, 716
Tsp45I	GTSAC	3 cut(s)	304, 359, 796
TspDTI	ATGAA	3 cut(s)	208, 332, 882
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	2 cut(s)	118, 634
Tth111I	GACNNNGTC	1 cut(s)	794
VpaK11BI	GGWCC	3 cut(s)	285, 400, 653
VspI	ATTAAT	1 cut(s)	872
XapI	RAATTY	1 cut(s)	455
XceI	RCATGY	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	554
XspI	CTAG	2 cut(s)	71, 314
Zsp2I	ATGCAT	2 cut(s)	871, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.