Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Reverse (-)

29602952 .. 29604256

Gene Structure 1305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0290700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAGATCAATGAGAGCAAGAAGAAGAGGAAGGCTAGTGATGGCGATGATGAGCAACAGAACAATGAAGAAGCGGAAATGCAGATCTTCTTTGCTCTCGTCAACAACATTCGCGAAGCTCGTCTGCGGTTGATGAATGGCTCGAATGTGGTATTGAATGCGGCCGGGATGGATCAAAATGACGACAACAGAACAAGCAGCAAGAAGAAGAAGAAGAAGTTGATAGAGGAAGAGGAAGAGAAAGAGAAAGAGAAGGAGAGGTCCAAACAGATGTTCAATAGTGCTGCAGTGAGGAAGCCATCATTAGTATTTCAGCGTCAAGATTTACGGGAAGAGGCTCAGTTTAAAATCCCTACTTCACAAATTAGTACAGGAGGTGAGAAAGGAAATATTACAGATTGTAACTTAGATCTTACTCTTTCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

142

Amino Acids

16.27

Weight (kDa)

5.74

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPR1_interact	PF15699	20 - 121	4.5e-06	NPR1 interacting

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	114
AciI	CCGC	3 cut(s)	74, 127, 161
AclWI	GGATC	1 cut(s)	180
AcoI	YGGCCR	1 cut(s)	162
AfaI	GTAC	1 cut(s)	370
AgsI	TTSAA	2 cut(s)	157, 277
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AluBI	AGCT	1 cut(s)	119
AluI	AGCT	1 cut(s)	119
AlwI	GGATC	1 cut(s)	180
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	198, 284
AspS9I	GGNCC	1 cut(s)	261
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	210, 271
BccI	CCATC	3 cut(s)	35, 163, 307
BcnI	CCSGG	1 cut(s)	166
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	1 cut(s)	285
BglII	AGATCT	2 cut(s)	84, 409
BisI	GCNGC	3 cut(s)	162, 199, 285
BlsI	GCNGC	3 cut(s)	163, 200, 286
Bme1390I	CCNGG	1 cut(s)	166
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	166
BpuMI	CCSGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	353
BseX3I	CGGCCG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	210, 271
Bsh1236I	CGCG	1 cut(s)	114
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	164
BsiEI	CGRYCG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	164
Bsp143I	GATC	4 cut(s)	6, 84, 172, 409
Bsp68I	TCGCGA	1 cut(s)	114
BspACI	CCGC	3 cut(s)	74, 127, 161
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	352
BspFNI	CGCG	1 cut(s)	114
BspMAI	CTGCAG	1 cut(s)	289
BspPI	GGATC	1 cut(s)	180
BssMI	GATC	4 cut(s)	6, 84, 172, 409
Bst6I	CTCTTC	4 cut(s)	20, 225, 231, 327
BstDEI	CTNAG	2 cut(s)	339, 406
BstF5I	GGATG	1 cut(s)	174
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	4 cut(s)	9, 87, 175, 412
BstMBI	GATC	4 cut(s)	6, 84, 172, 409
BstMCI	CGRYCG	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	285
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	210, 271
BstX2I	RGATCY	2 cut(s)	84, 409
BstYI	RGATCY	2 cut(s)	84, 409
BstZI	CGGCCG	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	164
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	174
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	294
BtuMI	TCGCGA	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	261
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	369
CviJI	RGCY	6 cut(s)	35, 119, 141, 164, 298, 338
CviKI_1	RGCY	6 cut(s)	35, 119, 141, 164, 298, 338
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	2 cut(s)	339, 406
DpnI	GATC	4 cut(s)	8, 86, 174, 411
DpnII	GATC	4 cut(s)	6, 84, 172, 409
DraI	TTTAAA	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	162
EagI	CGGCCG	1 cut(s)	162
Eam1104I	CTCTTC	4 cut(s)	20, 225, 231, 327
EarI	CTCTTC	4 cut(s)	20, 225, 231, 327
EclXI	CGGCCG	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	261
Eco52I	CGGCCG	1 cut(s)	162
FaiI	YATR	1 cut(s)	427
Fnu4HI	GCNGC	3 cut(s)	162, 199, 285
FokI	GGATG	1 cut(s)	181
Fsp4HI	GCNGC	3 cut(s)	162, 199, 285
FspBI	CTAG	1 cut(s)	36
GluI	GCNGC	3 cut(s)	162, 199, 285
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	1 cut(s)	165
HgaI	GACGC	1 cut(s)	305
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188III	TCNNGA	2 cut(s)	113, 320
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	2 cut(s)	25, 247
HpyCH4V	TGCA	2 cut(s)	82, 287
HpyF3I	CTNAG	2 cut(s)	339, 406
Kzo9I	GATC	4 cut(s)	6, 84, 172, 409
LpnPI	CCDG	2 cut(s)	178, 357
Lsp1109I	GCAGC	2 cut(s)	210, 271
MaeI	CTAG	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	4 cut(s)	8, 86, 174, 411
MboI	GATC	4 cut(s)	6, 84, 172, 409
MflI	RGATCY	2 cut(s)	84, 409
MluCI	AATT	1 cut(s)	363
MnlI	CCTC	7 cut(s)	21, 220, 226, 252, 285, 328, 368
MseI	TTAA	1 cut(s)	345
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	1 cut(s)	166
Mva1269I	GAATGC	1 cut(s)	163
MvnI	CGCG	1 cut(s)	114
NciI	CCSGG	1 cut(s)	166
NdeII	GATC	4 cut(s)	6, 84, 172, 409
NruI	TCGCGA	1 cut(s)	114
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PctI	GAATGC	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	163, 200, 286
PspPI	GGNCC	1 cut(s)	261
PstI	CTGCAG	1 cut(s)	289
PsuI	RGATCY	2 cut(s)	84, 409
RruI	TCGCGA	1 cut(s)	114
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	3 cut(s)	162, 199, 285
Sau3AI	GATC	4 cut(s)	6, 84, 172, 409
Sau96I	GGNCC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	166
SetI	ASST	3 cut(s)	121, 263, 379
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	261
Sse9I	AATT	1 cut(s)	363
SsiI	CCGC	3 cut(s)	74, 127, 161
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	164
TaqI	TCGA	1 cut(s)	143
TasI	AATT	1 cut(s)	363
TatI	WGTACW	1 cut(s)	368
TauI	GCSGC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	294
TseI	GCWGC	2 cut(s)	198, 284
TspDTI	ATGAA	2 cut(s)	81, 149
TspRI	CASTG	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	261
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.