Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Forward (+)

52362151 .. 52363745

Gene Structure 1595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG324000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAGACGGTGGGAATACAGGCTTGGGTGTTGATCTTCTTCATGGAATTGGGCATGCGAGCTTTATGTTTGTGGTGGTGGGTGATGTGTGGTCAACGACGATTGGGGTCCGGTATCGGAGGCGACATGACGACCCTGGTGGTGGCTCTTGTTTGGAGCTCAATTCATGGCCTTGTTTTTGGTGACAGGTCTGTTCAGCTCACTTTCGCAACGAAAGAGATTGATGTAACTGAATGGAAAGGGGACCTGCTTGCGGTTGGTGTTACAGAGAAGGACTTGAGGAAAGATCAGAACTCGAAATTCGAAAATCTGATATTGAAGAAGCTGGATTCTTGTTTGGGTGGGGTGTTGGCTGAGGTCTCGACTAAGGAGGACTTCACAGGAAAGTCTGGCCAGCCTACGGTTATTAGGCTTCCTGGTCTTGGCTCGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTTTGACAGTGGTGGCTACAACATCAAGACAGGACCTGGCTGTTCAATTGAGCTTATGAAGGTTGATATGGGAGGTTCAGCAGCTGTATTAGGTGCAGCAAAAGCCATTGGTCAAATCAAACCTTCTGGTGTAGAGGTTCATTTCATTGTCGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGGGACATTGTCACAGCTTCTAATGGAAAGACCATTGAGGTCAATAACACAGATCTGAAGGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

241

Amino Acids

25.64

Weight (kDa)

6.17

Isoelectric Point (pI)

27.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	86 - 155	1.2e-09	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	145 - 237	8.6e-30	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	255
AciI	CCGC	1 cut(s)	254
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	299
AfiI	CCNNNNNNNGG	4 cut(s)	142, 253, 400, 422
AgsI	TTSAA	2 cut(s)	319, 510
AjnI	CCWGG	4 cut(s)	135, 415, 499, 655
AjuI	GAANNNNNNNTTGG	2 cut(s)	7, 39
AluBI	AGCT	8 cut(s)	62, 159, 199, 325, 517, 548, 620, 674
AluI	AGCT	8 cut(s)	62, 159, 199, 325, 517, 548, 620, 674
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	364
AlwNI	CAGNNNCTG	2 cut(s)	500, 548
AoxI	GGCC	3 cut(s)	169, 391, 653
ApeKI	GCWGC	3 cut(s)	545, 560, 617
ApoI	RAATTY	1 cut(s)	299
AspS9I	GGNCC	3 cut(s)	108, 244, 497
AsuHPI	GGTGA	2 cut(s)	94, 194
AsuII	TTCGAA	1 cut(s)	303
AvaII	GGWCC	3 cut(s)	108, 244, 497
BalI	TGGCCA	1 cut(s)	393
BanII	GRGCYC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	161
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	3 cut(s)	557, 572, 629
BciT130I	CCWGG	4 cut(s)	137, 417, 501, 657
BcoDI	GTCTC	1 cut(s)	364
BfuAI	ACCTGC	1 cut(s)	255
BglII	AGATCT	1 cut(s)	709
BisI	GCNGC	3 cut(s)	546, 561, 618
BlsI	GCNGC	3 cut(s)	547, 562, 619
Bme1390I	CCNGG	4 cut(s)	137, 417, 501, 657
Bme18I	GGWCC	3 cut(s)	108, 244, 497
BmgT120I	GGNCC	3 cut(s)	108, 244, 497
BmiI	GGNNCC	2 cut(s)	109, 245
BmrFI	CCNGG	4 cut(s)	137, 417, 501, 657
Bpu10I	CCTNAGC	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	298
BsaI	GGTCTC	1 cut(s)	364
BsaJI	CCNNGG	2 cut(s)	135, 656
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 253, 400, 422
BseBI	CCWGG	4 cut(s)	137, 417, 501, 657
BseDI	CCNNGG	2 cut(s)	135, 656
BseLI	CCNNNNNNNGG	4 cut(s)	142, 253, 400, 422
BseMII	CTCAG	1 cut(s)	345
BseXI	GCAGC	3 cut(s)	557, 572, 629
BsgI	GTGCAG	1 cut(s)	579
BshFI	GGCC	3 cut(s)	171, 393, 655
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	2 cut(s)	257, 674
BslI	CCNNNNNNNGG	4 cut(s)	142, 253, 400, 422
BsmAI	GTCTC	1 cut(s)	364
BsmFI	GGGAC	2 cut(s)	257, 674
BsnI	GGCC	3 cut(s)	171, 393, 655
Bso31I	GGTCTC	1 cut(s)	364
Bsp119I	TTCGAA	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	3 cut(s)	33, 286, 709
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	3 cut(s)	171, 393, 655
BspCNI	CTCAG	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	109, 245
BspMI	ACCTGC	1 cut(s)	255
BspT104I	TTCGAA	1 cut(s)	303
BspTNI	GGTCTC	1 cut(s)	364
BssECI	CCNNGG	2 cut(s)	135, 656
BssMI	GATC	3 cut(s)	33, 286, 709
Bst2UI	CCWGG	4 cut(s)	137, 417, 501, 657
Bst4CI	ACNGT	3 cut(s)	10, 403, 473
Bst6I	CTCTTC	1 cut(s)	425
BstBI	TTCGAA	1 cut(s)	303
BstC8I	GCNNGC	4 cut(s)	56, 60, 252, 395
BstDEI	CTNAG	2 cut(s)	354, 366
BstKTI	GATC	3 cut(s)	36, 289, 712
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	3 cut(s)	33, 286, 709
BstMWI	GCNNNNNNNGC	1 cut(s)	566
BstNI	CCWGG	4 cut(s)	137, 417, 501, 657
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	4 cut(s)	135, 415, 499, 655
BstV1I	GCAGC	3 cut(s)	557, 572, 629
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BsuRI	GGCC	3 cut(s)	171, 393, 655
BtsIMutI	CAGTG	1 cut(s)	478
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	4 cut(s)	56, 60, 252, 395
CaiI	CAGNNNCTG	2 cut(s)	500, 548
Cfr13I	GGNCC	3 cut(s)	108, 244, 497
CviAII	CATG	4 cut(s)	43, 55, 127, 167
DdeI	CTNAG	2 cut(s)	354, 366
DpnI	GATC	3 cut(s)	35, 288, 711
DpnII	GATC	3 cut(s)	33, 286, 709
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
Ecl136II	GAGCTC	1 cut(s)	159
Eco147I	AGGCCT	1 cut(s)	655
Eco24I	GRGCYC	1 cut(s)	161
Eco31I	GGTCTC	1 cut(s)	364
Eco47I	GGWCC	3 cut(s)	108, 244, 497
Eco53kI	GAGCTC	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	159
EcoO109I	RGGNCCY	2 cut(s)	244, 497
EcoRII	CCWGG	4 cut(s)	135, 415, 499, 655
EcoT38I	GRGCYC	1 cut(s)	161
FaeI	CATG	4 cut(s)	46, 58, 130, 170
FaiI	YATR	9 cut(s)	44, 56, 67, 128, 168, 521, 533, 632, 650
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	2 cut(s)	257, 674
FatI	CATG	4 cut(s)	42, 54, 126, 166
Fnu4HI	GCNGC	3 cut(s)	546, 561, 618
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	3 cut(s)	546, 561, 618
GluI	GCNGC	3 cut(s)	546, 561, 618
HaeIII	GGCC	3 cut(s)	171, 393, 655
HapII	CCGG	1 cut(s)	111
Hin1II	CATG	4 cut(s)	46, 58, 130, 170
HincII	GTYRAC	1 cut(s)	95
HindII	GTYRAC	1 cut(s)	95
HinfI	GANTC	1 cut(s)	329
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	2 cut(s)	94, 194
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	4 cut(s)	119, 291, 312, 714
Hpy188III	TCNNGA	2 cut(s)	361, 490
Hpy8I	GTNNAC	1 cut(s)	95
Hpy99I	CGWCG	1 cut(s)	102
HpyAV	CCTTC	4 cut(s)	265, 517, 597, 709
HpyCH4III	ACNGT	3 cut(s)	10, 403, 473
HpyCH4V	TGCA	1 cut(s)	560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	566
HpyF3I	CTNAG	2 cut(s)	354, 366
Hsp92II	CATG	4 cut(s)	46, 58, 130, 170
Kzo9I	GATC	3 cut(s)	33, 286, 709
LmnI	GCTCC	1 cut(s)	156
Lsp1109I	GCAGC	3 cut(s)	557, 572, 629
MaeIII	GTNAC	4 cut(s)	182, 226, 262, 667
MalI	GATC	3 cut(s)	35, 288, 711
MboI	GATC	3 cut(s)	33, 286, 709
MboII	GAAGA	4 cut(s)	28, 31, 331, 442
MfeI	CAATTG	1 cut(s)	510
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	1 cut(s)	161
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	4 cut(s)	47, 162, 299, 510
MluNI	TGGCCA	1 cut(s)	393
MnlI	CCTC	9 cut(s)	113, 273, 349, 364, 426, 530, 592, 645, 688
Mox20I	TGGCCA	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	393
MspA1I	CMGCKG	1 cut(s)	548
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	4 cut(s)	137, 417, 501, 657
MunI	CAATTG	1 cut(s)	510
MvaI	CCWGG	4 cut(s)	137, 417, 501, 657
MwoI	GCNNNNNNNGC	1 cut(s)	566
NdeII	GATC	3 cut(s)	33, 286, 709
NlaIII	CATG	4 cut(s)	46, 58, 130, 170
NlaIV	GGNNCC	2 cut(s)	109, 245
NmuCI	GTSAC	2 cut(s)	182, 667
NspI	RCATGY	1 cut(s)	58
NspV	TTCGAA	1 cut(s)	303
PaeI	GCATGC	1 cut(s)	58
PceI	AGGCCT	1 cut(s)	655
PfeI	GAWTC	1 cut(s)	329
PflFI	GACNNNGTC	1 cut(s)	665
PkrI	GCNGC	3 cut(s)	547, 562, 619
PpuMI	RGGWCCY	2 cut(s)	244, 497
Psp124BI	GAGCTC	1 cut(s)	161
Psp5II	RGGWCCY	2 cut(s)	244, 497
Psp6I	CCWGG	4 cut(s)	135, 415, 499, 655
PspGI	CCWGG	4 cut(s)	135, 415, 499, 655
PspN4I	GGNNCC	2 cut(s)	109, 245
PspPI	GGNCC	3 cut(s)	108, 244, 497
PspPPI	RGGWCCY	2 cut(s)	244, 497
PstNI	CAGNNNCTG	2 cut(s)	500, 548
PsuI	RGATCY	1 cut(s)	709
PsyI	GACNNNGTC	1 cut(s)	665
PvuII	CAGCTG	1 cut(s)	548
SacI	GAGCTC	1 cut(s)	161
SatI	GCNGC	3 cut(s)	546, 561, 618
Sau3AI	GATC	3 cut(s)	33, 286, 709
Sau96I	GGNCC	3 cut(s)	108, 244, 497
ScrFI	CCNGG	4 cut(s)	137, 417, 501, 657
SduI	GDGCHC	1 cut(s)	161
SfuI	TTCGAA	1 cut(s)	303
SinI	GGWCC	3 cut(s)	108, 244, 497
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
SphI	GCATGC	1 cut(s)	58
Sse9I	AATT	4 cut(s)	47, 162, 299, 510
SseBI	AGGCCT	1 cut(s)	655
SsiI	CCGC	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	161
StuI	AGGCCT	1 cut(s)	655
StyD4I	CCNGG	4 cut(s)	135, 415, 499, 655
TaaI	ACNGT	3 cut(s)	10, 403, 473
TaqI	TCGA	4 cut(s)	296, 303, 362, 428
TasI	AATT	4 cut(s)	47, 162, 299, 510
TfiI	GAWTC	1 cut(s)	329
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	2 cut(s)	182, 667
TseI	GCWGC	3 cut(s)	545, 560, 617
Tsp45I	GTSAC	2 cut(s)	182, 667
TspDTI	ATGAA	5 cut(s)	31, 155, 536, 593, 598
TspRI	CASTG	1 cut(s)	478
Tth111I	GACNNNGTC	1 cut(s)	665
VpaK11BI	GGWCC	3 cut(s)	108, 244, 497
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.