Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Reverse (-)

41188731 .. 41190274

Gene Structure 1544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG162500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGACCCTAGTGGTGGCTCTTGTTTGGAGCTCAATTCATGGCCTTGTTTTTGGTGACAGGTCTGTTCAGCTCACTTTCGCGACGAAAGAGATTGATGTAACGGAATGGAAAGGGGACCTGCTTGCGATTGGTGTTACAAAGAAGGACTTGAGGAAAGATCAGAACTCGAAATTCGAAAATCCGATGTTGAAGAAGCTAGATTCTTGTTTGGGTGGGGTGTTGGTTGAGGTCTCGACTAAGGAGGACTTCACAGGAAAGTCTGGCCAGTCTACGGTTATTAGGCTTCCTGGTCTTGGCTCGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTTTGACAGTGGTGGCTACAACATCAAGACAGGACCTGGCTGTTCAATTGAGCTTATGAAGGTTGATATGGGAGGTTCAACAGCTGTATTAGGTGCAGCAAAAGCCATTGGTCAAATCAAACCTTCTGGTGTAGAGGTTCATTTCATTGTCGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGGGACATTGTCACAGCTTCTAATGGAAAGACCATTGAGGTCAATAACACAGATGTTGAAGGCAGACTGACTTTGGCAGATGCATTAGTATATGCATATGGGATTCCGCATGTTCTGGATCTTATGTCAAAATCAGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

223

Amino Acids

23.55

Weight (kDa)

6.31

Isoelectric Point (pI)

27.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	55 - 111	6.9e-10	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	103 - 208	1.1e-38	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	126
AccI	GTMKAC	1 cut(s)	269
AccII	CGCG	1 cut(s)	80
AciI	CCGC	1 cut(s)	635
AclWI	GGATC	1 cut(s)	654
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	170
AfiI	CCNNNNNNNGG	3 cut(s)	13, 271, 293
AgsI	TTSAA	4 cut(s)	190, 381, 414, 587
AjnI	CCWGG	3 cut(s)	286, 370, 526
AluBI	AGCT	7 cut(s)	30, 70, 196, 388, 419, 491, 545
AluI	AGCT	7 cut(s)	30, 70, 196, 388, 419, 491, 545
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	1 cut(s)	654
AlwNI	CAGNNNCTG	1 cut(s)	371
AoxI	GGCC	3 cut(s)	40, 262, 524
ApeKI	GCWGC	2 cut(s)	431, 488
ApoI	RAATTY	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	115, 368
AsuHPI	GGTGA	1 cut(s)	65
AsuII	TTCGAA	1 cut(s)	174
AvaII	GGWCC	2 cut(s)	115, 368
BalI	TGGCCA	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	443, 500
BciT130I	CCWGG	3 cut(s)	288, 372, 528
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	2 cut(s)	8, 197
BfuAI	ACCTGC	1 cut(s)	126
BisI	GCNGC	2 cut(s)	432, 489
BlsI	GCNGC	2 cut(s)	433, 490
Bme1390I	CCNGG	3 cut(s)	288, 372, 528
Bme18I	GGWCC	2 cut(s)	115, 368
BmgT120I	GGNCC	2 cut(s)	115, 368
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	3 cut(s)	288, 372, 528
BmsI	GCATC	1 cut(s)	598
Bpu14I	TTCGAA	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	169
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	527
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 271, 293
Bse1I	ACTGG	1 cut(s)	265
BseBI	CCWGG	3 cut(s)	288, 372, 528
BseDI	CCNNGG	1 cut(s)	527
BseLI	CCNNNNNNNGG	3 cut(s)	13, 271, 293
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	443, 500
BsgI	GTGCAG	1 cut(s)	450
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	3 cut(s)	42, 264, 526
BsiHKAI	GWGCWC	1 cut(s)	32
BslFI	GGGAC	2 cut(s)	128, 545
BslI	CCNNNNNNNGG	3 cut(s)	13, 271, 293
BsmAI	GTCTC	1 cut(s)	235
BsmFI	GGGAC	2 cut(s)	128, 545
BsnI	GGCC	3 cut(s)	42, 264, 526
Bso31I	GGTCTC	1 cut(s)	235
Bsp119I	TTCGAA	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	2 cut(s)	157, 646
Bsp68I	TCGCGA	1 cut(s)	80
BspACI	CCGC	1 cut(s)	635
BspANI	GGCC	3 cut(s)	42, 264, 526
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	1 cut(s)	116
BspMI	ACCTGC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	654
BspT104I	TTCGAA	1 cut(s)	174
BspTNI	GGTCTC	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	527
BssMI	GATC	2 cut(s)	157, 646
Bst2UI	CCWGG	3 cut(s)	288, 372, 528
Bst4CI	ACNGT	2 cut(s)	274, 344
Bst6I	CTCTTC	1 cut(s)	296
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	237
BstFNI	CGCG	1 cut(s)	80
BstKTI	GATC	2 cut(s)	160, 649
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	2 cut(s)	157, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNI	CCWGG	3 cut(s)	288, 372, 528
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	3 cut(s)	286, 370, 526
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	2 cut(s)	443, 500
BstX2I	RGATCY	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	646
BsuRI	GGCC	3 cut(s)	42, 264, 526
BtsIMutI	CAGTG	1 cut(s)	349
BtuMI	TCGCGA	1 cut(s)	80
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	123
CaiI	CAGNNNCTG	1 cut(s)	371
Cfr13I	GGNCC	2 cut(s)	115, 368
CviAII	CATG	2 cut(s)	38, 638
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	2 cut(s)	159, 648
DpnII	GATC	2 cut(s)	157, 646
EaeI	YGGCCR	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Ecl136II	GAGCTC	1 cut(s)	30
Eco147I	AGGCCT	1 cut(s)	526
Eco24I	GRGCYC	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	2 cut(s)	115, 368
Eco53kI	GAGCTC	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	30
EcoO109I	RGGNCCY	2 cut(s)	115, 368
EcoRII	CCWGG	3 cut(s)	286, 370, 526
EcoT22I	ATGCAT	2 cut(s)	613, 625
EcoT38I	GRGCYC	1 cut(s)	32
FaeI	CATG	2 cut(s)	41, 641
FalI	AAGNNNNNCTT	4 cut(s)	131, 163, 230, 262
FaqI	GGGAC	2 cut(s)	128, 545
FatI	CATG	2 cut(s)	37, 637
FauNDI	CATATG	1 cut(s)	625
FblI	GTMKAC	1 cut(s)	269
Fnu4HI	GCNGC	2 cut(s)	432, 489
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	432, 489
FspBI	CTAG	2 cut(s)	8, 197
GluI	GCNGC	2 cut(s)	432, 489
HaeIII	GGCC	3 cut(s)	42, 264, 526
Hin1II	CATG	2 cut(s)	41, 641
HinfI	GANTC	2 cut(s)	200, 631
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	4 cut(s)	162, 183, 664, 671
Hpy188III	TCNNGA	4 cut(s)	79, 232, 361, 644
Hpy8I	GTNNAC	1 cut(s)	270
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	4 cut(s)	136, 388, 468, 581
HpyCH4III	ACNGT	2 cut(s)	274, 344
HpyCH4V	TGCA	3 cut(s)	431, 611, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	41, 641
Kzo9I	GATC	2 cut(s)	157, 646
LmnI	GCTCC	1 cut(s)	27
Lsp1109I	GCAGC	2 cut(s)	443, 500
LweI	GCATC	1 cut(s)	598
MaeI	CTAG	2 cut(s)	8, 197
MaeIII	GTNAC	4 cut(s)	53, 97, 133, 538
MalI	GATC	2 cut(s)	159, 648
MboI	GATC	2 cut(s)	157, 646
MboII	GAAGA	2 cut(s)	202, 313
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	1 cut(s)	646
MhlI	GDGCHC	1 cut(s)	32
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	3 cut(s)	33, 170, 381
MluNI	TGGCCA	1 cut(s)	264
MnlI	CCTC	8 cut(s)	144, 220, 235, 297, 401, 463, 516, 559
Mox20I	TGGCCA	1 cut(s)	264
Mph1103I	ATGCAT	2 cut(s)	613, 625
MscI	TGGCCA	1 cut(s)	264
Msp20I	TGGCCA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	419
MspR9I	CCNGG	3 cut(s)	288, 372, 528
MunI	CAATTG	1 cut(s)	381
MvaI	CCWGG	3 cut(s)	288, 372, 528
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	2 cut(s)	157, 646
NlaIII	CATG	2 cut(s)	41, 641
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	2 cut(s)	53, 538
NruI	TCGCGA	1 cut(s)	80
NsiI	ATGCAT	2 cut(s)	613, 625
NspI	RCATGY	1 cut(s)	641
NspV	TTCGAA	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	526
PfeI	GAWTC	2 cut(s)	200, 631
PflFI	GACNNNGTC	1 cut(s)	536
PkrI	GCNGC	2 cut(s)	433, 490
PpuMI	RGGWCCY	2 cut(s)	115, 368
Psp124BI	GAGCTC	1 cut(s)	32
Psp5II	RGGWCCY	2 cut(s)	115, 368
Psp6I	CCWGG	3 cut(s)	286, 370, 526
PspGI	CCWGG	3 cut(s)	286, 370, 526
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	2 cut(s)	115, 368
PspPPI	RGGWCCY	2 cut(s)	115, 368
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	646
PsyI	GACNNNGTC	1 cut(s)	536
PvuII	CAGCTG	1 cut(s)	419
RruI	TCGCGA	1 cut(s)	80
SacI	GAGCTC	1 cut(s)	32
SatI	GCNGC	2 cut(s)	432, 489
Sau3AI	GATC	2 cut(s)	157, 646
Sau96I	GGNCC	2 cut(s)	115, 368
ScrFI	CCNGG	3 cut(s)	288, 372, 528
SduI	GDGCHC	1 cut(s)	32
SfaNI	GCATC	1 cut(s)	598
SfuI	TTCGAA	1 cut(s)	174
SinI	GGWCC	2 cut(s)	115, 368
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	3 cut(s)	33, 170, 381
SseBI	AGGCCT	1 cut(s)	526
SsiI	CCGC	1 cut(s)	635
SspMI	CTAG	2 cut(s)	8, 197
SstI	GAGCTC	1 cut(s)	32
StuI	AGGCCT	1 cut(s)	526
StyD4I	CCNGG	3 cut(s)	286, 370, 526
TaaI	ACNGT	2 cut(s)	274, 344
TaqI	TCGA	4 cut(s)	167, 174, 233, 299
TasI	AATT	3 cut(s)	33, 170, 381
TfiI	GAWTC	2 cut(s)	200, 631
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	2 cut(s)	53, 538
TseI	GCWGC	2 cut(s)	431, 488
Tsp45I	GTSAC	2 cut(s)	53, 538
TspDTI	ATGAA	4 cut(s)	26, 407, 464, 469
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	349
Tth111I	GACNNNGTC	1 cut(s)	536
VpaK11BI	GGWCC	2 cut(s)	115, 368
XapI	RAATTY	1 cut(s)	170
XceI	RCATGY	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	269
XspI	CTAG	2 cut(s)	8, 197
Zsp2I	ATGCAT	2 cut(s)	613, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.