Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Reverse (-)

40016731 .. 40020793

Gene Structure 4063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00196790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTGTGGTCAACGACGATTGGGGTCCTGTATCGGCAGCGACGTGACGACCCTGGTGGTGGCTCTTGTTTGGAGCTCAATTCATGGCCTTGTTTTTGGTGACAGGTCTGTTCAGCTCACTTTCGCGACGAAAGAGATTGATGTAACGGAATGGAAAGGGGACCTGCTTGCGGTTGGTGTTACAGAGAAGGACTTGAGGAAAGATCAGAACTCGAAATTCGAAAATCCGATATTGAAGAAGCTGGATTCTTGTTTGGGTGGGGTGTTGGCTGAGGTCTCGACTAAGGGGGACTTCACAGGAAAATCTGGCCAGTCTACGGTTATTAGGCTTCCTGGTCTTGGCTCGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTTTGACAGTGGTGGCTACAACATCAAGACAGGACCTGGCTATTCAATTGAGCTTATGAAGGTTGGTATGGGAGGTTCAGCAGCTGTATTAGGTGCAGCAAAAGCCATTGGTCGAATCAAACCTTCTGGTGTAGAGGTTCATTTCATTGTCGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGGGACATTGTCACAGCTTCTAATGGAAAGACCATTGAGGTCAATAACACAGATGCTGAAGGCAGACTAATTTTGGCAGATGCATTAGTATATGCATCAGGGATTCTGCATGTTCTAGATCTTATGTCAAAATCAGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

238

Amino Acids

24.88

Weight (kDa)

7.65

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	58 - 127	6.7e-11	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	118 - 224	2.7e-39	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	171
AccI	GTMKAC	1 cut(s)	314
AccII	CGCG	1 cut(s)	125
AciI	CCGC	1 cut(s)	170
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	651
AfiI	CCNNNNNNNGG	4 cut(s)	58, 169, 316, 338
AgsI	TTSAA	2 cut(s)	235, 426
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	4 cut(s)	51, 331, 415, 571
AluBI	AGCT	7 cut(s)	75, 115, 241, 433, 464, 536, 590
AluI	AGCT	7 cut(s)	75, 115, 241, 433, 464, 536, 590
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	280
AlwNI	CAGNNNCTG	3 cut(s)	416, 464, 629
AoxI	GGCC	3 cut(s)	85, 307, 569
ApeKI	GCWGC	4 cut(s)	36, 461, 476, 533
ApoI	RAATTY	1 cut(s)	215
AspS9I	GGNCC	3 cut(s)	24, 160, 413
AsuHPI	GGTGA	1 cut(s)	110
AsuII	TTCGAA	1 cut(s)	219
AvaII	GGWCC	3 cut(s)	24, 160, 413
BalI	TGGCCA	1 cut(s)	309
BanII	GRGCYC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	77
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	4 cut(s)	48, 473, 488, 545
BciT130I	CCWGG	4 cut(s)	53, 333, 417, 573
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	689
BfuAI	ACCTGC	1 cut(s)	171
BglII	AGATCT	1 cut(s)	691
BisI	GCNGC	4 cut(s)	37, 462, 477, 534
BlsI	GCNGC	4 cut(s)	38, 463, 478, 535
Bme1390I	CCNGG	4 cut(s)	53, 333, 417, 573
Bme18I	GGWCC	3 cut(s)	24, 160, 413
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	3 cut(s)	24, 160, 413
BmiI	GGNNCC	2 cut(s)	25, 161
BmrFI	CCNGG	4 cut(s)	53, 333, 417, 573
BmsI	GCATC	3 cut(s)	616, 643, 677
Bpu10I	CCTNAGC	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	214
BsaI	GGTCTC	1 cut(s)	280
BsaJI	CCNNGG	2 cut(s)	51, 572
Bsc4I	CCNNNNNNNGG	4 cut(s)	58, 169, 316, 338
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	4 cut(s)	53, 333, 417, 573
BseDI	CCNNGG	2 cut(s)	51, 572
BseLI	CCNNNNNNNGG	4 cut(s)	58, 169, 316, 338
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	310
BseXI	GCAGC	4 cut(s)	48, 473, 488, 545
BsgI	GTGCAG	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	3 cut(s)	87, 309, 571
BsiHKAI	GWGCWC	1 cut(s)	77
BslFI	GGGAC	3 cut(s)	173, 302, 590
BslI	CCNNNNNNNGG	4 cut(s)	58, 169, 316, 338
BsmAI	GTCTC	1 cut(s)	280
BsmFI	GGGAC	3 cut(s)	173, 302, 590
BsnI	GGCC	3 cut(s)	87, 309, 571
Bso31I	GGTCTC	1 cut(s)	280
Bsp119I	TTCGAA	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	202, 691
Bsp68I	TCGCGA	1 cut(s)	125
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	3 cut(s)	87, 309, 571
BspCNI	CTCAG	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	2 cut(s)	25, 161
BspMI	ACCTGC	1 cut(s)	171
BspT104I	TTCGAA	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	280
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	51, 572
BssMI	GATC	2 cut(s)	202, 691
Bst2UI	CCWGG	4 cut(s)	53, 333, 417, 573
Bst4CI	ACNGT	2 cut(s)	319, 389
Bst6I	CTCTTC	1 cut(s)	341
BstBI	TTCGAA	1 cut(s)	219
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	2 cut(s)	270, 282
BstFNI	CGCG	1 cut(s)	125
BstKTI	GATC	2 cut(s)	205, 694
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	2 cut(s)	202, 691
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNI	CCWGG	4 cut(s)	53, 333, 417, 573
BstNSI	RCATGY	1 cut(s)	686
BstSCI	CCNGG	4 cut(s)	51, 331, 415, 571
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	4 cut(s)	48, 473, 488, 545
BstX2I	RGATCY	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	691
BsuRI	GGCC	3 cut(s)	87, 309, 571
BtrI	CACGTC	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	394
BtuMI	TCGCGA	1 cut(s)	125
BveI	ACCTGC	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	168
CaiI	CAGNNNCTG	3 cut(s)	416, 464, 629
Cfr13I	GGNCC	3 cut(s)	24, 160, 413
CviAII	CATG	2 cut(s)	83, 683
DdeI	CTNAG	2 cut(s)	270, 282
DpnI	GATC	2 cut(s)	204, 693
DpnII	GATC	2 cut(s)	202, 691
EaeI	YGGCCR	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
Ecl136II	GAGCTC	1 cut(s)	75
Eco147I	AGGCCT	1 cut(s)	571
Eco24I	GRGCYC	1 cut(s)	77
Eco31I	GGTCTC	1 cut(s)	280
Eco47I	GGWCC	3 cut(s)	24, 160, 413
Eco53kI	GAGCTC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	651
EcoICRI	GAGCTC	1 cut(s)	75
EcoO109I	RGGNCCY	3 cut(s)	24, 160, 413
EcoRII	CCWGG	4 cut(s)	51, 331, 415, 571
EcoT22I	ATGCAT	2 cut(s)	658, 670
EcoT38I	GRGCYC	1 cut(s)	77
FaeI	CATG	2 cut(s)	86, 686
FaiI	YATR	9 cut(s)	84, 437, 449, 548, 566, 664, 666, 684, 698
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FaqI	GGGAC	3 cut(s)	173, 302, 590
FatI	CATG	2 cut(s)	82, 682
FblI	GTMKAC	1 cut(s)	314
Fnu4HI	GCNGC	4 cut(s)	37, 462, 477, 534
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	4 cut(s)	37, 462, 477, 534
FspBI	CTAG	1 cut(s)	689
GluI	GCNGC	4 cut(s)	37, 462, 477, 534
HaeIII	GGCC	3 cut(s)	87, 309, 571
Hin1II	CATG	2 cut(s)	86, 686
HincII	GTYRAC	1 cut(s)	11
HindII	GTYRAC	1 cut(s)	11
HinfI	GANTC	3 cut(s)	245, 495, 676
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	11, 315
Hpy188I	TCNGA	4 cut(s)	207, 228, 709, 716
Hpy188III	TCNNGA	4 cut(s)	124, 277, 406, 689
Hpy8I	GTNNAC	2 cut(s)	11, 315
Hpy99I	CGWCG	3 cut(s)	18, 44, 130
HpyAV	CCTTC	4 cut(s)	181, 433, 513, 626
HpyCH4III	ACNGT	2 cut(s)	319, 389
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	4 cut(s)	476, 656, 668, 682
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpyF3I	CTNAG	2 cut(s)	270, 282
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	86, 686
Kzo9I	GATC	2 cut(s)	202, 691
LmnI	GCTCC	1 cut(s)	72
Lsp1109I	GCAGC	4 cut(s)	48, 473, 488, 545
LweI	GCATC	3 cut(s)	616, 643, 677
MaeI	CTAG	1 cut(s)	689
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	5 cut(s)	43, 98, 142, 178, 583
MalI	GATC	2 cut(s)	204, 693
MboI	GATC	2 cut(s)	202, 691
MboII	GAAGA	2 cut(s)	247, 358
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	1 cut(s)	691
MhlI	GDGCHC	1 cut(s)	77
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	4 cut(s)	78, 215, 426, 642
MluNI	TGGCCA	1 cut(s)	309
MnlI	CCTC	7 cut(s)	189, 265, 342, 446, 508, 561, 604
Mox20I	TGGCCA	1 cut(s)	309
Mph1103I	ATGCAT	2 cut(s)	658, 670
MscI	TGGCCA	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	464
MspR9I	CCNGG	4 cut(s)	53, 333, 417, 573
MunI	CAATTG	1 cut(s)	426
MvaI	CCWGG	4 cut(s)	53, 333, 417, 573
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	482
NdeII	GATC	2 cut(s)	202, 691
NlaIII	CATG	2 cut(s)	86, 686
NlaIV	GGNNCC	2 cut(s)	25, 161
NmuCI	GTSAC	3 cut(s)	43, 98, 583
NruI	TCGCGA	1 cut(s)	125
NsiI	ATGCAT	2 cut(s)	658, 670
NspI	RCATGY	1 cut(s)	686
NspV	TTCGAA	1 cut(s)	219
PceI	AGGCCT	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	3 cut(s)	245, 495, 676
PflFI	GACNNNGTC	1 cut(s)	581
PkrI	GCNGC	4 cut(s)	38, 463, 478, 535
PpuMI	RGGWCCY	3 cut(s)	24, 160, 413
Psp124BI	GAGCTC	1 cut(s)	77
Psp5II	RGGWCCY	3 cut(s)	24, 160, 413
Psp6I	CCWGG	4 cut(s)	51, 331, 415, 571
PspGI	CCWGG	4 cut(s)	51, 331, 415, 571
PspN4I	GGNNCC	2 cut(s)	25, 161
PspPI	GGNCC	3 cut(s)	24, 160, 413
PspPPI	RGGWCCY	3 cut(s)	24, 160, 413
PsrI	GAACNNNNNNTAC	2 cut(s)	439, 471
PstNI	CAGNNNCTG	3 cut(s)	416, 464, 629
PsuI	RGATCY	1 cut(s)	691
PsyI	GACNNNGTC	1 cut(s)	581
PvuII	CAGCTG	1 cut(s)	464
RruI	TCGCGA	1 cut(s)	125
SacI	GAGCTC	1 cut(s)	77
SatI	GCNGC	4 cut(s)	37, 462, 477, 534
Sau3AI	GATC	2 cut(s)	202, 691
Sau96I	GGNCC	3 cut(s)	24, 160, 413
ScrFI	CCNGG	4 cut(s)	53, 333, 417, 573
SduI	GDGCHC	1 cut(s)	77
SfaNI	GCATC	3 cut(s)	616, 643, 677
SfuI	TTCGAA	1 cut(s)	219
SinI	GGWCC	3 cut(s)	24, 160, 413
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
Sse9I	AATT	4 cut(s)	78, 215, 426, 642
SseBI	AGGCCT	1 cut(s)	571
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	1 cut(s)	689
SstI	GAGCTC	1 cut(s)	77
StuI	AGGCCT	1 cut(s)	571
StyD4I	CCNGG	4 cut(s)	51, 331, 415, 571
TaaI	ACNGT	2 cut(s)	319, 389
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	5 cut(s)	212, 219, 278, 344, 493
TasI	AATT	4 cut(s)	78, 215, 426, 642
TfiI	GAWTC	3 cut(s)	245, 495, 676
TscAI	CASTG	1 cut(s)	394
TseFI	GTSAC	3 cut(s)	43, 98, 583
TseI	GCWGC	4 cut(s)	36, 461, 476, 533
Tsp45I	GTSAC	3 cut(s)	43, 98, 583
TspDTI	ATGAA	4 cut(s)	71, 452, 509, 514
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	1 cut(s)	394
Tth111I	GACNNNGTC	1 cut(s)	581
VpaK11BI	GGWCC	3 cut(s)	24, 160, 413
XapI	RAATTY	1 cut(s)	215
XbaI	TCTAGA	1 cut(s)	688
XceI	RCATGY	1 cut(s)	686
XmiI	GTMKAC	1 cut(s)	314
XspI	CTAG	1 cut(s)	689
Zsp2I	ATGCAT	2 cut(s)	658, 670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.