Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001785.1

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Forward (+)

34291 .. 35379

Gene Structure 1089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001785.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgaagctcactttctcgacgaaagagattgatgtaacggaatggaaaggggacctgcttgcggttggtgttacagagaaggacttgaggaaagatcagaactcgaaattcgaaaatccgatattgaagaagctggattcttgcttgggtggggagttggctgaggtctcgactaaggaggacttcacaggaaagtctggccagtctacggttattaggcttcctggtcttggctcgaagagggttgatatgggaggttcagcagctatattaggtgcagcaaaagccattggtcaaatcaaaccttctggtgtagaggtcaataacacaaatgctgaaggcagactgactttggcagttgcattagtatatgcttctgggattccgcatgttctggatcttatgtcaaaatcagacttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

140

Amino Acids

14.84

Weight (kDa)

6.59

Isoelectric Point (pI)

26.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	63
AccI	GTMKAC	1 cut(s)	206
AciI	CCGC	2 cut(s)	62, 386
AclWI	GGATC	1 cut(s)	405
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	1 cut(s)	357
AfiI	CCNNNNNNNGG	3 cut(s)	61, 208, 230
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	223
AluBI	AGCT	3 cut(s)	7, 133, 266
AluI	AGCT	3 cut(s)	7, 133, 266
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	1 cut(s)	405
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	263, 278
ApoI	RAATTY	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	52
AsuII	TTCGAA	1 cut(s)	111
AvaII	GGWCC	1 cut(s)	52
BalI	TGGCCA	1 cut(s)	201
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	275, 290
BciT130I	CCWGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	172
BfuAI	ACCTGC	1 cut(s)	63
BisI	GCNGC	2 cut(s)	264, 279
BlsI	GCNGC	2 cut(s)	265, 280
Bme1390I	CCNGG	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	225
Bpu10I	CCTNAGC	1 cut(s)	162
Bpu14I	TTCGAA	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 208, 230
Bse1I	ACTGG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	225
BseLI	CCNNNNNNNGG	3 cut(s)	61, 208, 230
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	275, 290
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	3 cut(s)	61, 208, 230
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	172
Bsp119I	TTCGAA	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	94, 397
BspACI	CCGC	2 cut(s)	62, 386
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	53
BspMI	ACCTGC	1 cut(s)	63
BspPI	GGATC	1 cut(s)	405
BspT104I	TTCGAA	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	202
BssMI	GATC	2 cut(s)	94, 397
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	1 cut(s)	233
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	2 cut(s)	162, 174
BstKTI	GATC	2 cut(s)	97, 400
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	2 cut(s)	94, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	223
BstV1I	GCAGC	2 cut(s)	275, 290
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	52
CviAII	CATG	1 cut(s)	389
CviJI	RGCY	8 cut(s)	7, 133, 161, 201, 220, 234, 266, 287
CviKI_1	RGCY	8 cut(s)	7, 133, 161, 201, 220, 234, 266, 287
DdeI	CTNAG	2 cut(s)	162, 174
DpnI	GATC	2 cut(s)	96, 399
DpnII	GATC	2 cut(s)	94, 397
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	357
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	223
FaeI	CATG	1 cut(s)	392
FaiI	YATR	6 cut(s)	251, 269, 370, 372, 390, 404
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	2 cut(s)	264, 279
Fsp4HI	GCNGC	2 cut(s)	264, 279
GluI	GCNGC	2 cut(s)	264, 279
HaeIII	GGCC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	392
HinfI	GANTC	2 cut(s)	137, 382
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	4 cut(s)	99, 120, 415, 422
Hpy188III	TCNNGA	3 cut(s)	16, 169, 395
Hpy8I	GTNNAC	1 cut(s)	207
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	3 cut(s)	73, 315, 332
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	2 cut(s)	278, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	2 cut(s)	162, 174
Hsp92II	CATG	1 cut(s)	392
Kzo9I	GATC	2 cut(s)	94, 397
Lsp1109I	GCAGC	2 cut(s)	275, 290
MaeIII	GTNAC	2 cut(s)	34, 70
MalI	GATC	2 cut(s)	96, 399
MboI	GATC	2 cut(s)	94, 397
MboII	GAAGA	2 cut(s)	139, 250
MflI	RGATCY	1 cut(s)	397
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	1 cut(s)	107
MluNI	TGGCCA	1 cut(s)	201
MnlI	CCTC	6 cut(s)	81, 157, 172, 234, 248, 310
Mox20I	TGGCCA	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	284
NdeII	GATC	2 cut(s)	94, 397
NlaIII	CATG	1 cut(s)	392
NlaIV	GGNNCC	1 cut(s)	53
NspI	RCATGY	1 cut(s)	392
NspV	TTCGAA	1 cut(s)	111
PfeI	GAWTC	2 cut(s)	137, 382
PkrI	GCNGC	2 cut(s)	265, 280
PpuMI	RGGWCCY	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	52
PspPPI	RGGWCCY	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	397
SatI	GCNGC	2 cut(s)	264, 279
Sau3AI	GATC	2 cut(s)	94, 397
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	225
SetI	ASST	9 cut(s)	9, 57, 135, 168, 259, 268, 277, 307, 321
SfuI	TTCGAA	1 cut(s)	111
SinI	GGWCC	1 cut(s)	52
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	2 cut(s)	62, 386
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	211
TaqI	TCGA	5 cut(s)	17, 104, 111, 170, 236
TasI	AATT	1 cut(s)	107
TfiI	GAWTC	2 cut(s)	137, 382
TseI	GCWGC	2 cut(s)	263, 278
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	1 cut(s)	392
XmiI	GTMKAC	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.