Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Forward (+)

12574341 .. 12575844

Gene Structure 1504 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG109200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCCTTGTTTTTTGTGACAGAATGGAAAGGGGACCTGCTTGCGGTTGGTGTTACAGAGAAGGACTTGAGGAAAGATCAGAACTCGAAATTTGAAAATCCGATATTGAAGAAGCTGGATTCTTGTTTGGGTGAGGTGTTGGCTGAGGTCTCGACTAAGGAGGACTTCACAGGAAAGTCTGGTCAGTCTACAGTTATTAGGCTTCCTGGTCTTGGCTCGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTTTGACAGTGGTGGCTACAACATCAAGACAGGACCTGGCTGTTCAATTGAGCTTATGAAGGTTGATATGGGAGGTTCAGCAACTGTATTAGGTGCAGCAAAAGCCATTGGTCAAATCAAACCTTCTAGTGTAGAGGTTCATTTCATTGTCGCAGCTTGTGAGAATATGAAAAGTGGAACAGGTATGAGGCCTGGGGACATTGTCACAACTTCTAATGGAAAGACCATTGAGGTCAATAACACAGATGCTGAAGACAGACTGACTTTGGCAGATGCATTAGTATATGCATCTGGGATTCCGCATGTTCTGGATCTTATGTCAAAATCAGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

196

Amino Acids

20.69

Weight (kDa)

5.46

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	16 - 85	2.8e-10	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	76 - 182	7e-38	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	188
AciI	CCGC	2 cut(s)	44, 554
AclWI	GGATC	1 cut(s)	573
AcsI	RAATTY	1 cut(s)	89
AcuI	CTGAAG	1 cut(s)	525
AfiI	CCNNNNNNNGG	2 cut(s)	43, 212
AgsI	TTSAA	3 cut(s)	95, 109, 300
AjnI	CCWGG	3 cut(s)	205, 289, 445
AluBI	AGCT	3 cut(s)	115, 307, 410
AluI	AGCT	3 cut(s)	115, 307, 410
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	573
AlwNI	CAGNNNCTG	3 cut(s)	290, 338, 503
AoxI	GGCC	2 cut(s)	3, 443
ApeKI	GCWGC	2 cut(s)	350, 407
ApoI	RAATTY	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	34, 287
AsuHPI	GGTGA	1 cut(s)	143
AvaII	GGWCC	2 cut(s)	34, 287
BbsI	GAAGAC	1 cut(s)	513
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	362, 419
BciT130I	CCWGG	3 cut(s)	207, 291, 447
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	45
BisI	GCNGC	2 cut(s)	351, 408
BlsI	GCNGC	2 cut(s)	352, 409
Bme1390I	CCNGG	3 cut(s)	207, 291, 447
Bme18I	GGWCC	2 cut(s)	34, 287
BmgT120I	GGNCC	2 cut(s)	34, 287
BmiI	GGNNCC	1 cut(s)	35
BmrFI	CCNGG	3 cut(s)	207, 291, 447
BmsI	GCATC	3 cut(s)	490, 517, 551
BpiI	GAAGAC	1 cut(s)	513
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 212
BseBI	CCWGG	3 cut(s)	207, 291, 447
BseDI	CCNNGG	1 cut(s)	446
BseLI	CCNNNNNNNGG	2 cut(s)	43, 212
BseMII	CTCAG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	362, 419
BsgI	GTGCAG	1 cut(s)	369
BshFI	GGCC	2 cut(s)	5, 445
BslFI	GGGAC	2 cut(s)	47, 464
BslI	CCNNNNNNNGG	2 cut(s)	43, 212
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	2 cut(s)	47, 464
BsnI	GGCC	2 cut(s)	5, 445
Bso31I	GGTCTC	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	76, 565
BspACI	CCGC	2 cut(s)	44, 554
BspANI	GGCC	2 cut(s)	5, 445
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	35
BspMI	ACCTGC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	573
BspTNI	GGTCTC	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	2 cut(s)	76, 565
Bst2UI	CCWGG	3 cut(s)	207, 291, 447
Bst4CI	ACNGT	3 cut(s)	193, 263, 340
Bst6I	CTCTTC	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	144, 156
BstKTI	GATC	2 cut(s)	79, 568
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	2 cut(s)	76, 565
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	3 cut(s)	207, 291, 447
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	3 cut(s)	205, 289, 445
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	2 cut(s)	362, 419
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
BsuRI	GGCC	2 cut(s)	5, 445
BtsIMutI	CAGTG	1 cut(s)	268
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	42
CaiI	CAGNNNCTG	3 cut(s)	290, 338, 503
Cfr13I	GGNCC	2 cut(s)	34, 287
CviAII	CATG	1 cut(s)	557
DdeI	CTNAG	2 cut(s)	144, 156
DpnI	GATC	2 cut(s)	78, 567
DpnII	GATC	2 cut(s)	76, 565
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Eco147I	AGGCCT	1 cut(s)	445
Eco31I	GGTCTC	1 cut(s)	154
Eco47I	GGWCC	2 cut(s)	34, 287
Eco57I	CTGAAG	1 cut(s)	525
EcoO109I	RGGNCCY	2 cut(s)	34, 287
EcoRII	CCWGG	3 cut(s)	205, 289, 445
EcoT22I	ATGCAT	2 cut(s)	532, 544
FaeI	CATG	1 cut(s)	560
FaiI	YATR	8 cut(s)	311, 323, 422, 440, 538, 540, 558, 572
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	2 cut(s)	47, 464
FatI	CATG	1 cut(s)	556
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	2 cut(s)	351, 408
Fsp4HI	GCNGC	2 cut(s)	351, 408
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	2 cut(s)	351, 408
HaeIII	GGCC	2 cut(s)	5, 445
Hin1II	CATG	1 cut(s)	560
HinfI	GANTC	2 cut(s)	119, 550
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	4 cut(s)	81, 102, 583, 590
Hpy188III	TCNNGA	3 cut(s)	151, 280, 563
Hpy8I	GTNNAC	1 cut(s)	189
HpyAV	CCTTC	3 cut(s)	55, 307, 387
HpyCH4III	ACNGT	3 cut(s)	193, 263, 340
HpyCH4V	TGCA	3 cut(s)	350, 530, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	2 cut(s)	144, 156
Hsp92II	CATG	1 cut(s)	560
Kzo9I	GATC	2 cut(s)	76, 565
Lsp1109I	GCAGC	2 cut(s)	362, 419
LweI	GCATC	3 cut(s)	490, 517, 551
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	3 cut(s)	16, 52, 457
MalI	GATC	2 cut(s)	78, 567
MboI	GATC	2 cut(s)	76, 565
MboII	GAAGA	3 cut(s)	121, 232, 518
MfeI	CAATTG	1 cut(s)	300
MflI	RGATCY	1 cut(s)	565
MluCI	AATT	2 cut(s)	89, 300
MnlI	CCTC	9 cut(s)	63, 127, 139, 154, 216, 320, 382, 435, 478
Mph1103I	ATGCAT	2 cut(s)	532, 544
MspR9I	CCNGG	3 cut(s)	207, 291, 447
MunI	CAATTG	1 cut(s)	300
MvaI	CCWGG	3 cut(s)	207, 291, 447
MwoI	GCNNNNNNNGC	1 cut(s)	356
NdeII	GATC	2 cut(s)	76, 565
NlaIII	CATG	1 cut(s)	560
NlaIV	GGNNCC	1 cut(s)	35
NmuCI	GTSAC	2 cut(s)	16, 457
NsiI	ATGCAT	2 cut(s)	532, 544
NspI	RCATGY	1 cut(s)	560
PceI	AGGCCT	1 cut(s)	445
PfeI	GAWTC	2 cut(s)	119, 550
PflFI	GACNNNGTC	1 cut(s)	455
PkrI	GCNGC	2 cut(s)	352, 409
PpuMI	RGGWCCY	2 cut(s)	34, 287
Psp5II	RGGWCCY	2 cut(s)	34, 287
Psp6I	CCWGG	3 cut(s)	205, 289, 445
PspGI	CCWGG	3 cut(s)	205, 289, 445
PspN4I	GGNNCC	1 cut(s)	35
PspPI	GGNCC	2 cut(s)	34, 287
PspPPI	RGGWCCY	2 cut(s)	34, 287
PstNI	CAGNNNCTG	3 cut(s)	290, 338, 503
PsuI	RGATCY	1 cut(s)	565
PsyI	GACNNNGTC	1 cut(s)	455
SatI	GCNGC	2 cut(s)	351, 408
Sau3AI	GATC	2 cut(s)	76, 565
Sau96I	GGNCC	2 cut(s)	34, 287
ScrFI	CCNGG	3 cut(s)	207, 291, 447
SfaNI	GCATC	3 cut(s)	490, 517, 551
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	2 cut(s)	34, 287
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	2 cut(s)	89, 300
SseBI	AGGCCT	1 cut(s)	445
SsiI	CCGC	2 cut(s)	44, 554
SspMI	CTAG	1 cut(s)	381
StuI	AGGCCT	1 cut(s)	445
StyD4I	CCNGG	3 cut(s)	205, 289, 445
TaaI	ACNGT	3 cut(s)	193, 263, 340
TaqI	TCGA	3 cut(s)	86, 152, 218
TasI	AATT	2 cut(s)	89, 300
TfiI	GAWTC	2 cut(s)	119, 550
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	2 cut(s)	16, 457
TseI	GCWGC	2 cut(s)	350, 407
Tsp45I	GTSAC	2 cut(s)	16, 457
TspDTI	ATGAA	4 cut(s)	326, 383, 388, 437
TspRI	CASTG	1 cut(s)	268
Tth111I	GACNNNGTC	1 cut(s)	455
VpaK11BI	GGWCC	2 cut(s)	34, 287
XapI	RAATTY	1 cut(s)	89
XceI	RCATGY	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	188
XspI	CTAG	1 cut(s)	381
Zsp2I	ATGCAT	2 cut(s)	532, 544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.