Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Reverse (-)

55820850 .. 55821281

Gene Structure 432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG385700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAAAGAGATTGATGTAACGGAATGGAAAGGGGCAGGTGTTAGTGTTACGCAGAAGGACTTGGCGAAAGATCAGAACTCGAAATTCAAAAATCTGATATTGAAGAAGCTGGATTCCTGTTTGGGTGGGGTGTTGGCTGAGGTCTTGACTGTGGAGGACTTCACAGGAAAGTCTGGCCAGTCTACGGTTGTTAGGCTTCCTGGTCTTGGCTCAAAGAGGGTTGGCTTGTTTGGGCTTGGACAATTTGGTTCGTCTACAGAAGCTTTTAAGGGTCTTGGGGAGGCTGCAGCAGCAGCGGCAAAGACTACTCAAGCAAGTGATATTGCTATGTGCTTGCTTCCTTGGAGGGGCTTTCTACGAAATCTTGCCAATGTTCTCACACCTGGTTTGTTTTGGCTTTACTATTGCCATTTTGGTGGGCCATACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

143

Amino Acids

15.3

Weight (kDa)

9.03

Isoelectric Point (pI)

27.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	30 - 118	1.5e-15	Cytosol aminopeptidase family, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	26
Acc36I	ACCTGC	1 cut(s)	26
AccI	GTMKAC	2 cut(s)	182, 254
AciI	CCGC	1 cut(s)	296
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	83
AfiI	CCNNNNNNNGG	3 cut(s)	184, 206, 347
AgsI	TTSAA	2 cut(s)	88, 103
AjnI	CCWGG	2 cut(s)	199, 382
AluBI	AGCT	2 cut(s)	109, 263
AluI	AGCT	2 cut(s)	109, 263
AoxI	GGCC	2 cut(s)	175, 419
ApeKI	GCWGC	4 cut(s)	284, 287, 290, 293
ApoI	RAATTY	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	419
BalI	TGGCCA	1 cut(s)	177
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	4 cut(s)	271, 299, 302, 305
BciT130I	CCWGG	2 cut(s)	201, 384
BfmI	CTRYAG	2 cut(s)	255, 285
BfuAI	ACCTGC	1 cut(s)	26
BisI	GCNGC	5 cut(s)	285, 288, 291, 294, 297
BlsI	GCNGC	5 cut(s)	286, 289, 292, 295, 298
Bme1390I	CCNGG	2 cut(s)	201, 384
BmgT120I	GGNCC	1 cut(s)	419
BmrFI	CCNGG	2 cut(s)	201, 384
Bpu10I	CCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 206, 347
Bse1I	ACTGG	1 cut(s)	178
BseBI	CCWGG	2 cut(s)	201, 384
BseDI	CCNNGG	1 cut(s)	341
BseLI	CCNNNNNNNGG	3 cut(s)	184, 206, 347
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	1 cut(s)	178
BseXI	GCAGC	4 cut(s)	271, 299, 302, 305
BshFI	GGCC	2 cut(s)	177, 421
BslI	CCNNNNNNNGG	3 cut(s)	184, 206, 347
BsnI	GGCC	2 cut(s)	177, 421
Bsp143I	GATC	1 cut(s)	70
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	2 cut(s)	177, 421
BspCNI	CTCAG	1 cut(s)	130
BspMAI	CTGCAG	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	341
BssMI	GATC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	341
Bst2UI	CCWGG	2 cut(s)	201, 384
Bst4CI	ACNGT	2 cut(s)	151, 187
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	1 cut(s)	138
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 293, 296
BstNI	CCWGG	2 cut(s)	201, 384
BstSCI	CCNGG	2 cut(s)	199, 382
BstSFI	CTRYAG	2 cut(s)	255, 285
BstV1I	GCAGC	4 cut(s)	271, 299, 302, 305
BstXI	CCANNNNNNTGG	1 cut(s)	416
BsuRI	GGCC	2 cut(s)	177, 421
BveI	ACCTGC	1 cut(s)	26
Cac8I	GCNNGC	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	419
CsiI	ACCWGGT	1 cut(s)	382
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	341
EcoRII	CCWGG	2 cut(s)	199, 382
EcoT14I	CCWWGG	1 cut(s)	341
ErhI	CCWWGG	1 cut(s)	341
FaiI	YATR	2 cut(s)	329, 424
FblI	GTMKAC	2 cut(s)	182, 254
Fnu4HI	GCNGC	5 cut(s)	285, 288, 291, 294, 297
Fsp4HI	GCNGC	5 cut(s)	285, 288, 291, 294, 297
GluI	GCNGC	5 cut(s)	285, 288, 291, 294, 297
HaeIII	GGCC	2 cut(s)	177, 421
HindIII	AAGCTT	1 cut(s)	261
HinfI	GANTC	1 cut(s)	113
Hpy166II	GTNNAC	2 cut(s)	183, 255
Hpy188I	TCNGA	2 cut(s)	75, 96
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	2 cut(s)	183, 255
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	2 cut(s)	151, 187
HpyCH4V	TGCA	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 293, 296
HpyF3I	CTNAG	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	70
Lsp1109I	GCAGC	4 cut(s)	271, 299, 302, 305
MabI	ACCWGGT	1 cut(s)	382
MaeIII	GTNAC	2 cut(s)	16, 46
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	1 cut(s)	115
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	2 cut(s)	83, 242
MluNI	TGGCCA	1 cut(s)	177
MnlI	CCTC	5 cut(s)	133, 148, 210, 274, 339
Mox20I	TGGCCA	1 cut(s)	177
MscI	TGGCCA	1 cut(s)	177
MseI	TTAA	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	414
Msp20I	TGGCCA	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	296
MspR9I	CCNGG	2 cut(s)	201, 384
MvaI	CCWGG	2 cut(s)	201, 384
MwoI	GCNNNNNNNGC	3 cut(s)	290, 293, 296
NdeII	GATC	1 cut(s)	70
PaqCI	CACCTGC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	113
PkrI	GCNGC	5 cut(s)	286, 289, 292, 295, 298
Psp6I	CCWGG	2 cut(s)	199, 382
PspGI	CCWGG	2 cut(s)	199, 382
PspPI	GGNCC	1 cut(s)	419
PstI	CTGCAG	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	5 cut(s)	285, 288, 291, 294, 297
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	1 cut(s)	419
ScrFI	CCNGG	2 cut(s)	201, 384
SetI	ASST	5 cut(s)	40, 111, 144, 265, 385
SexAI	ACCWGGT	1 cut(s)	382
SfcI	CTRYAG	2 cut(s)	255, 285
SmiMI	CAYNNNNRTG	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	2 cut(s)	83, 242
SsiI	CCGC	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	199, 382
StyI	CCWWGG	1 cut(s)	341
TaaI	ACNGT	2 cut(s)	151, 187
TaqI	TCGA	1 cut(s)	80
TasI	AATT	2 cut(s)	83, 242
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TseI	GCWGC	4 cut(s)	284, 287, 290, 293
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	35
XapI	RAATTY	1 cut(s)	83
XmiI	GTMKAC	2 cut(s)	182, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.