Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Reverse (-)

19651792 .. 19656010

Gene Structure 4219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00299710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGAAGGTTGATATGGGAGGTTCAGCAGCTGTATTAGGTGCAGCAAAAGCCATTGGTCGAATCAAACCTTCTGGTGTAGAGGTTCATTTCATTGTCGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGGGACATTGTCACAGCTTCTAATGGAAAGACCATTGAGGTCAATAACACAGATGCTGAAGGCAGATTGATTTTGGCAGATGCATTAGTATATGCATCTGGGATTCCACATGTTCTGGATCTTATGTCAAAATCAGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

93

Amino Acids

9.54

Weight (kDa)

5.51

Isoelectric Point (pI)

15.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17	PF00883	1 - 79	2.7e-34	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	216
AflIII	ACRYGT	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	3 cut(s)	29, 101, 155
AluI	AGCT	3 cut(s)	29, 101, 155
AlwI	GGATC	1 cut(s)	264
AlwNI	CAGNNNCTG	2 cut(s)	29, 194
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	3 cut(s)	26, 41, 98
BbvI	GCAGC	3 cut(s)	38, 53, 110
BciT130I	CCWGG	1 cut(s)	138
BisI	GCNGC	3 cut(s)	27, 42, 99
BlsI	GCNGC	3 cut(s)	28, 43, 100
Bme1390I	CCNGG	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	3 cut(s)	181, 208, 242
BsaJI	CCNNGG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	137
BseXI	GCAGC	3 cut(s)	38, 53, 110
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	256
BspANI	GGCC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	138
BstKTI	GATC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	136
BstV1I	GCAGC	3 cut(s)	38, 53, 110
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	136
CaiI	CAGNNNCTG	2 cut(s)	29, 194
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	5 cut(s)	29, 50, 101, 136, 155
CviKI_1	RGCY	5 cut(s)	29, 50, 101, 136, 155
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
Eco147I	AGGCCT	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	216
EcoRII	CCWGG	1 cut(s)	136
EcoT22I	ATGCAT	2 cut(s)	223, 235
FaeI	CATG	1 cut(s)	251
FaiI	YATR	7 cut(s)	14, 113, 131, 229, 231, 249, 263
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	247
Fnu4HI	GCNGC	3 cut(s)	27, 42, 99
Fsp4HI	GCNGC	3 cut(s)	27, 42, 99
GluI	GCNGC	3 cut(s)	27, 42, 99
HaeIII	GGCC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	251
HinfI	GANTC	2 cut(s)	60, 241
Hpy188I	TCNGA	2 cut(s)	274, 281
Hpy188III	TCNNGA	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	78, 191
HpyCH4V	TGCA	3 cut(s)	41, 221, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	251
Kzo9I	GATC	1 cut(s)	256
LpnPI	CCDG	6 cut(s)	57, 111, 123, 150, 222, 239
Lsp1109I	GCAGC	3 cut(s)	38, 53, 110
LweI	GCATC	3 cut(s)	181, 208, 242
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MflI	RGATCY	1 cut(s)	256
MnlI	CCTC	4 cut(s)	11, 73, 126, 169
Mph1103I	ATGCAT	2 cut(s)	223, 235
MspA1I	CMGCKG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	47
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	148
NsiI	ATGCAT	2 cut(s)	223, 235
NspI	RCATGY	1 cut(s)	251
PceI	AGGCCT	1 cut(s)	136
PciI	ACATGT	1 cut(s)	247
PfeI	GAWTC	2 cut(s)	60, 241
PflFI	GACNNNGTC	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	28, 43, 100
PscI	ACATGT	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PstNI	CAGNNNCTG	2 cut(s)	29, 194
PsuI	RGATCY	1 cut(s)	256
PsyI	GACNNNGTC	1 cut(s)	146
PvuII	CAGCTG	1 cut(s)	29
SatI	GCNGC	3 cut(s)	27, 42, 99
Sau3AI	GATC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	138
SfaNI	GCATC	3 cut(s)	181, 208, 242
SgeI	CNNG	8 cut(s)	84, 114, 138, 149, 150, 249, 260, 266
SseBI	AGGCCT	1 cut(s)	136
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	136
TaqI	TCGA	1 cut(s)	58
TfiI	GAWTC	2 cut(s)	60, 241
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	3 cut(s)	26, 41, 98
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	3 cut(s)	17, 74, 79
Tth111I	GACNNNGTC	1 cut(s)	146
XceI	RCATGY	1 cut(s)	251
Zsp2I	ATGCAT	2 cut(s)	223, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.