Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002000.1

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Forward (+)

2433 .. 8220

Gene Structure 5788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002000.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

atggtggcgaatgtcaacgacgtaggaaccaagcacgacctcccaatgggcctgatggagaatgactctgccacgtttctctccaccgacaactcctgcccagatatcttcttccacatcatcccaaacactccaggcgactacctcaccgatgggactccaatggcggccagtgtagtgtcattggcttcttccctcactttcgcgacgaaagagattgatgtaacggaatggaaaggggcaggtgttagtgttacgcagaaggacttggcgaaagatcagaactcgaaattcaaaaatatgatattgaagaagctggattcctgtttgggtggggtgttggctgaggtcttgactgaggaggacttcataggaaagtctggccagtctactgttgttaggcttcctggtcttggctcaaagagggttggcttgtttgggcttggacaatttggttcgtctacagaagcttttaagggtcttggggaggttgcagcagcagcggcaaagacactcaagcaagtgatattgctatgtgcttgcttccttggaggggctttctgcgaaatcttgccaatgttctcacacctagttcgttttggctttactattgccattttggtgggccatacttatgaacttgcagcagagttttctgatcctatcaatggtatcacatcccctgatcaaattgacgagggtttgcaatctcttcttcttgtcaggtggcagccatgggcaacgttggctcgcctcgtcgactaccgactgctgccgggtaggaatttgaatactagaggcctggaagctttgtggagaggggcttggctcgaatttggctctgaatggttttggcgacgagctccgaacgacatctttagagcggtgggcggcgatgcaacacaggtggcgattcgtcgaggatcctccaagatcagtgacatgctggcaggggctggatcagctgcatcttgggagactggatttgatgcggcgtggcttagtcgagttttgatggtaagttgcggtggtcgggttcggcatgggcttgtggtggcgaggtcggtgttggcttgccggtgtgatctggcgttggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

366

Amino Acids

39.35

Weight (kDa)

6.0

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	233
Acc36I	ACCTGC	1 cut(s)	233
AccBSI	CCGCTC	1 cut(s)	884
AccI	GTMKAC	3 cut(s)	389, 461, 759
AccII	CGCG	1 cut(s)	206
AciI	CCGC	6 cut(s)	167, 503, 884, 891, 992, 1026
AclI	AACGTT	1 cut(s)	743
AclWI	GGATC	4 cut(s)	653, 918, 931, 967
AcoI	YGGCCR	2 cut(s)	168, 382
AcsI	RAATTY	3 cut(s)	290, 784, 833
AfiI	CCNNNNNNNGG	4 cut(s)	46, 413, 553, 668
AgsI	TTSAA	3 cut(s)	295, 310, 790
AjnI	CCWGG	3 cut(s)	133, 406, 801
AluBI	AGCT	5 cut(s)	316, 470, 809, 863, 965
AluI	AGCT	5 cut(s)	316, 470, 809, 863, 965
Alw21I	GWGCWC	1 cut(s)	865
Alw26I	GTCTC	1 cut(s)	971
AlwI	GGATC	4 cut(s)	653, 918, 931, 967
AlwNI	CAGNNNCTG	1 cut(s)	956
AoxI	GGCC	5 cut(s)	49, 168, 382, 625, 799
ApeKI	GCWGC	7 cut(s)	494, 497, 500, 644, 730, 772, 965
ApoI	RAATTY	3 cut(s)	290, 784, 833
AspS9I	GGNCC	2 cut(s)	49, 625
AsuC2I	CCSGG	1 cut(s)	777
AsuHPI	GGTGA	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	384
BamHI	GGATCC	1 cut(s)	923
BanII	GRGCYC	1 cut(s)	865
Bbv12I	GWGCWC	1 cut(s)	865
BbvCI	CCTCAGC	1 cut(s)	345
BbvI	GCAGC	7 cut(s)	506, 509, 512, 656, 742, 759, 952
BccI	CCATC	3 cut(s)	49, 146, 1009
BciT130I	CCWGG	3 cut(s)	135, 408, 803
BclI	TGATCA	1 cut(s)	685
BcnI	CCSGG	1 cut(s)	777
BcoDI	GTCTC	1 cut(s)	971
BfaI	CTAG	2 cut(s)	590, 795
BfmI	CTRYAG	1 cut(s)	462
BfuAI	ACCTGC	1 cut(s)	233
Bme1390I	CCNGG	4 cut(s)	135, 408, 777, 803
BmgT120I	GGNCC	2 cut(s)	49, 625
BmiI	GGNNCC	2 cut(s)	28, 925
BmrFI	CCNGG	4 cut(s)	135, 408, 777, 803
BmsI	GCATC	3 cut(s)	886, 977, 979
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BpmI	CTGGAG	1 cut(s)	117
Bpu10I	CCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	777
BsaJI	CCNNGG	2 cut(s)	547, 734
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 413, 553, 668
Bse118I	RCCGGY	1 cut(s)	1077
Bse1I	ACTGG	3 cut(s)	171, 385, 985
BseBI	CCWGG	3 cut(s)	135, 408, 803
BseDI	CCNNGG	2 cut(s)	547, 734
BseGI	GGATG	2 cut(s)	120, 677
BseLI	CCNNNNNNNGG	4 cut(s)	46, 413, 553, 668
BseMII	CTCAG	2 cut(s)	336, 348
BseNI	ACTGG	3 cut(s)	171, 385, 985
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	7 cut(s)	506, 509, 512, 656, 742, 759, 952
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	5 cut(s)	51, 170, 384, 627, 801
BsiHKAI	GWGCWC	1 cut(s)	865
BsiSI	CCGG	2 cut(s)	776, 1078
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	4 cut(s)	46, 413, 553, 668
BsmAI	GTCTC	1 cut(s)	971
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	5 cut(s)	51, 170, 384, 627, 801
Bsp1286I	GDGCHC	1 cut(s)	865
Bsp143I	GATC	7 cut(s)	277, 658, 685, 923, 933, 959, 1084
Bsp19I	CCATGG	1 cut(s)	734
Bsp68I	TCGCGA	1 cut(s)	206
BspACI	CCGC	6 cut(s)	167, 503, 884, 891, 992, 1026
BspANI	GGCC	5 cut(s)	51, 170, 384, 627, 801
BspCNI	CTCAG	2 cut(s)	337, 349
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	2 cut(s)	28, 925
BspMI	ACCTGC	1 cut(s)	233
BspPI	GGATC	4 cut(s)	653, 918, 931, 967
BsrBI	CCGCTC	1 cut(s)	884
BsrFI	RCCGGY	1 cut(s)	1077
BsrI	ACTGG	3 cut(s)	171, 385, 985
BssAI	RCCGGY	1 cut(s)	1077
BssECI	CCNNGG	2 cut(s)	547, 734
BssMI	GATC	7 cut(s)	277, 658, 685, 923, 933, 959, 1084
BssT1I	CCWWGG	2 cut(s)	547, 734
Bst2UI	CCWGG	3 cut(s)	135, 408, 803
Bst4CI	ACNGT	1 cut(s)	394
Bst6I	CTCTTC	1 cut(s)	717
BstC8I	GCNNGC	4 cut(s)	541, 751, 948, 1075
BstDEI	CTNAG	3 cut(s)	345, 357, 1001
BstDSI	CCRYGG	1 cut(s)	734
BstF5I	GGATG	2 cut(s)	120, 677
BstFNI	CGCG	1 cut(s)	206
BstKTI	GATC	7 cut(s)	280, 661, 688, 926, 936, 962, 1087
BstMAI	GTCTC	1 cut(s)	971
BstMBI	GATC	7 cut(s)	277, 658, 685, 923, 933, 959, 1084
BstMWI	GCNNNNNNNGC	4 cut(s)	500, 503, 746, 962
BstNI	CCWGG	3 cut(s)	135, 408, 803
BstNSI	RCATGY	1 cut(s)	946
BstSCI	CCNGG	4 cut(s)	133, 406, 775, 801
BstSFI	CTRYAG	1 cut(s)	462
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	7 cut(s)	506, 509, 512, 656, 742, 759, 952
BstX2I	RGATCY	1 cut(s)	923
BstXI	CCANNNNNNTGG	1 cut(s)	622
BstYI	RGATCY	1 cut(s)	923
BsuRI	GGCC	5 cut(s)	51, 170, 384, 627, 801
BtgI	CCRYGG	1 cut(s)	734
BtgZI	GCGATG	1 cut(s)	909
BtsCI	GGATG	2 cut(s)	120, 677
BtsIMutI	CAGTG	2 cut(s)	178, 943
BtuMI	TCGCGA	1 cut(s)	206
BveI	ACCTGC	1 cut(s)	233
Cac8I	GCNNGC	4 cut(s)	541, 751, 948, 1075
CaiI	CAGNNNCTG	1 cut(s)	956
Cfr10I	RCCGGY	1 cut(s)	1077
Cfr13I	GGNCC	2 cut(s)	49, 625
CspCI	CAANNNNNGTGG	2 cut(s)	888, 923
CviAII	CATG	3 cut(s)	735, 943, 1043
DdeI	CTNAG	3 cut(s)	345, 357, 1001
DpnI	GATC	7 cut(s)	279, 660, 687, 925, 935, 961, 1086
DpnII	GATC	7 cut(s)	277, 658, 685, 923, 933, 959, 1084
EaeI	YGGCCR	2 cut(s)	168, 382
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Ecl136II	GAGCTC	1 cut(s)	863
Eco130I	CCWWGG	2 cut(s)	547, 734
Eco147I	AGGCCT	1 cut(s)	801
Eco24I	GRGCYC	1 cut(s)	865
Eco32I	GATATC	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	863
EcoICRI	GAGCTC	1 cut(s)	863
EcoRII	CCWGG	3 cut(s)	133, 406, 801
EcoRV	GATATC	1 cut(s)	106
EcoT14I	CCWWGG	2 cut(s)	547, 734
EcoT38I	GRGCYC	1 cut(s)	865
ErhI	CCWWGG	2 cut(s)	547, 734
FaeI	CATG	3 cut(s)	738, 946, 1046
FaiI	YATR	8 cut(s)	302, 371, 535, 630, 636, 736, 944, 1044
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	3 cut(s)	734, 942, 1042
FbaI	TGATCA	1 cut(s)	685
FblI	GTMKAC	3 cut(s)	389, 461, 759
FokI	GGATG	2 cut(s)	107, 664
FriOI	GRGCYC	1 cut(s)	865
FspBI	CTAG	2 cut(s)	590, 795
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	5 cut(s)	51, 170, 384, 627, 801
HapII	CCGG	2 cut(s)	776, 1078
Hin1II	CATG	3 cut(s)	738, 946, 1046
HincII	GTYRAC	2 cut(s)	16, 760
HindII	GTYRAC	2 cut(s)	16, 760
HindIII	AAGCTT	2 cut(s)	468, 807
HinfI	GANTC	4 cut(s)	65, 157, 320, 913
HpaII	CCGG	2 cut(s)	776, 1078
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	4 cut(s)	16, 390, 462, 760
Hpy188I	TCNGA	4 cut(s)	282, 658, 844, 867
Hpy188III	TCNNGA	2 cut(s)	205, 352
Hpy8I	GTNNAC	4 cut(s)	16, 390, 462, 760
Hpy99I	CGWCG	5 cut(s)	23, 211, 761, 861, 921
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	3 cut(s)	21, 74, 743
HpyCH4V	TGCA	5 cut(s)	494, 644, 706, 899, 968
HpyF10VI	GCNNNNNNNGC	4 cut(s)	500, 503, 746, 962
HpyF3I	CTNAG	3 cut(s)	345, 357, 1001
HpySE526I	ACGT	3 cut(s)	21, 74, 743
Hsp92II	CATG	3 cut(s)	738, 946, 1046
Ksp22I	TGATCA	1 cut(s)	685
Kzo9I	GATC	7 cut(s)	277, 658, 685, 923, 933, 959, 1084
LmnI	GCTCC	1 cut(s)	868
Lsp1109I	GCAGC	7 cut(s)	506, 509, 512, 656, 742, 759, 952
LweI	GCATC	3 cut(s)	886, 977, 979
MaeI	CTAG	2 cut(s)	590, 795
MaeII	ACGT	3 cut(s)	21, 74, 743
MaeIII	GTNAC	3 cut(s)	223, 253, 938
MalI	GATC	7 cut(s)	279, 660, 687, 925, 935, 961, 1086
MbiI	CCGCTC	1 cut(s)	884
MboI	GATC	7 cut(s)	277, 658, 685, 923, 933, 959, 1084
MboII	GAAGA	6 cut(s)	100, 103, 183, 322, 704, 707
MflI	RGATCY	1 cut(s)	923
MhlI	GDGCHC	1 cut(s)	865
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	5 cut(s)	290, 449, 690, 784, 833
MluNI	TGGCCA	1 cut(s)	384
MlyI	GAGTC	2 cut(s)	59, 151
Mox20I	TGGCCA	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	2 cut(s)	620, 633
Msp20I	TGGCCA	1 cut(s)	384
MspA1I	CMGCKG	2 cut(s)	503, 965
MspI	CCGG	2 cut(s)	776, 1078
MspR9I	CCNGG	4 cut(s)	135, 408, 777, 803
MvaI	CCWGG	3 cut(s)	135, 408, 803
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	4 cut(s)	500, 503, 746, 962
NciI	CCSGG	1 cut(s)	777
NcoI	CCATGG	1 cut(s)	734
NdeII	GATC	7 cut(s)	277, 658, 685, 923, 933, 959, 1084
NlaIII	CATG	3 cut(s)	738, 946, 1046
NlaIV	GGNNCC	2 cut(s)	28, 925
NmuCI	GTSAC	1 cut(s)	938
NruI	TCGCGA	1 cut(s)	206
NspI	RCATGY	1 cut(s)	946
PaqCI	CACCTGC	1 cut(s)	233
PceI	AGGCCT	1 cut(s)	801
PfeI	GAWTC	2 cut(s)	320, 913
PleI	GAGTC	2 cut(s)	59, 151
PpsI	GAGTC	2 cut(s)	59, 151
Psp124BI	GAGCTC	1 cut(s)	865
Psp1406I	AACGTT	1 cut(s)	743
Psp6I	CCWGG	3 cut(s)	133, 406, 801
PspGI	CCWGG	3 cut(s)	133, 406, 801
PspN4I	GGNNCC	2 cut(s)	28, 925
PspPI	GGNCC	2 cut(s)	49, 625
PstNI	CAGNNNCTG	1 cut(s)	956
PsuI	RGATCY	1 cut(s)	923
PvuII	CAGCTG	1 cut(s)	965
RruI	TCGCGA	1 cut(s)	206
RseI	CAYNNNNRTG	2 cut(s)	620, 633
SacI	GAGCTC	1 cut(s)	865
SalI	GTCGAC	1 cut(s)	758
SaqAI	TTAA	1 cut(s)	474
Sau3AI	GATC	7 cut(s)	277, 658, 685, 923, 933, 959, 1084
Sau96I	GGNCC	2 cut(s)	49, 625
SchI	GAGTC	2 cut(s)	59, 151
ScrFI	CCNGG	4 cut(s)	135, 408, 777, 803
SduI	GDGCHC	1 cut(s)	865
SfaNI	GCATC	3 cut(s)	886, 977, 979
SfcI	CTRYAG	1 cut(s)	462
SmiMI	CAYNNNNRTG	2 cut(s)	620, 633
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
Sse9I	AATT	5 cut(s)	290, 449, 690, 784, 833
SseBI	AGGCCT	1 cut(s)	801
SsiI	CCGC	6 cut(s)	167, 503, 884, 891, 992, 1026
SspMI	CTAG	2 cut(s)	590, 795
SstI	GAGCTC	1 cut(s)	865
StuI	AGGCCT	1 cut(s)	801
StyD4I	CCNGG	4 cut(s)	133, 406, 775, 801
StyI	CCWWGG	2 cut(s)	547, 734
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	3 cut(s)	24, 77, 746
TaqI	TCGA	5 cut(s)	287, 759, 831, 919, 1006
TasI	AATT	5 cut(s)	290, 449, 690, 784, 833
TauI	GCSGC	4 cut(s)	170, 506, 894, 995
TfiI	GAWTC	2 cut(s)	320, 913
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	2 cut(s)	178, 943
TseFI	GTSAC	1 cut(s)	938
TseI	GCWGC	7 cut(s)	494, 497, 500, 644, 730, 772, 965
Tsp45I	GTSAC	1 cut(s)	938
TspDTI	ATGAA	2 cut(s)	358, 651
TspGWI	ACGGA	1 cut(s)	242
TspRI	CASTG	2 cut(s)	178, 943
XapI	RAATTY	3 cut(s)	290, 784, 833
XceI	RCATGY	1 cut(s)	946
XmiI	GTMKAC	3 cut(s)	389, 461, 759
XspI	CTAG	2 cut(s)	590, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.