Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Reverse (-)

41187211 .. 41188370

Gene Structure 1160 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG162400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTTTTATCATGCATTTAATGGGTACATGGACCATGCTTTCCCACTTGATGAATTAAGGCCTCATTCTTGTGGGGGTGAAGATAGCCTCGGTGGATATGCCCTAACTTTGATTGATGCTTTAGAGACACTAGCTTTACTTGGTGATCGGGAAAGCTTTGCTGCCTCTGTTGAATGGATTGGTAAAAACCTTCAGTTTAAAATAAATAAGACGAAGAGTTTTCTGACCCTATCAATGGCGTTACATCCCCTGTTTAGATACCTATTATTAGAAAGATGGCTCTGCAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006491 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015923 GO:0015924 GO:0016787 GO:0016798 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0071704 GO:1901135 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

97

Amino Acids

11.06

Weight (kDa)

6.03

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_47	PF01532	1 - 71	3e-20	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	2 cut(s)	134, 156
AluI	AGCT	2 cut(s)	134, 156
Alw26I	GTCTC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	89, 155
AvaII	GGWCC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	131
BisI	GCNGC	1 cut(s)	162
BlsI	GCNGC	1 cut(s)	163
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmsI	GCATC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	1 cut(s)	61
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	145
BspANI	GGCC	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	244
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	3 cut(s)	11, 28, 35
CviJI	RGCY	5 cut(s)	61, 87, 134, 156, 280
CviKI_1	RGCY	5 cut(s)	61, 87, 134, 156, 280
CviQI	GTAC	1 cut(s)	25
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
DraI	TTTAAA	1 cut(s)	199
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Eco147I	AGGCCT	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	176
EcoT22I	ATGCAT	1 cut(s)	16
FaeI	CATG	3 cut(s)	14, 31, 38
FaiI	YATR	4 cut(s)	12, 29, 36, 99
FatI	CATG	3 cut(s)	10, 27, 34
Fnu4HI	GCNGC	1 cut(s)	162
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	162
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	61
Hin1II	CATG	3 cut(s)	14, 31, 38
HindIII	AAGCTT	1 cut(s)	154
HphI	GGTGA	2 cut(s)	89, 155
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	200
HpyCH4V	TGCA	2 cut(s)	14, 285
Hsp92II	CATG	3 cut(s)	14, 31, 38
Kzo9I	GATC	1 cut(s)	145
LpnPI	CCDG	1 cut(s)	263
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	2 cut(s)	92, 226
MluCI	AATT	1 cut(s)	53
MnlI	CCTC	3 cut(s)	72, 98, 175
Mph1103I	ATGCAT	1 cut(s)	16
MseI	TTAA	3 cut(s)	18, 56, 198
MslI	CAYNNNNRTG	1 cut(s)	69
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	3 cut(s)	14, 31, 38
NsiI	ATGCAT	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	31
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	18, 56, 198
SatI	GCNGC	1 cut(s)	162
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	31
SetI	ASST	4 cut(s)	136, 158, 192, 264
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	69
Sse9I	AATT	1 cut(s)	53
SseBI	AGGCCT	1 cut(s)	61
SspMI	CTAG	1 cut(s)	131
StuI	AGGCCT	1 cut(s)	61
TasI	AATT	1 cut(s)	53
Tru1I	TTAA	3 cut(s)	18, 56, 198
Tru9I	TTAA	3 cut(s)	18, 56, 198
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	31
XspI	CTAG	1 cut(s)	131
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.