Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Forward (+)

18160307 .. 18161403

Gene Structure 1097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001607

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGAAAGAGATTGATGTAATGGAACGGAAAGGGGACTTGCTTGCGATTGGTGTTACAGAGAAGGACTTGAGGAAAGATCAGAACTTGAAATTCAAAAATCCGATATTGAAGAAGCTAGATTCTTGTTTGGGTGGGGTGTTGGCTGAGGTCTCGACTAAGGAGGACTTCACAGGAAATGGTGGCTACAACATCAAGACAGGACCTGGCTGTTCAATTGAGCTTATGAAGGTTGATATGGGAGGTTCAGCAGCTGTATTAGGTGCAGCAAAAGCCATTGGTCAAATCAAACCTTCTGGTGTAGAGGTTCATTTCATTGTCGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCTTGGGGACATTGTCACAGCTTCTAATGGAAAGACCATTGAGGTCAATAACACAGATGCTGAAGGCAGACTGACTTTGGCAGATGCATTAGTATATGCATCTGGGATTCCGCATGTTCTGGATCTTATGTCAAAATCAGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

168

Amino Acids

17.59

Weight (kDa)

5.42

Isoelectric Point (pI)

19.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17	PF00883	60 - 153	3.4e-36	Cytosol aminopeptidase family, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	467
AclWI	GGATC	1 cut(s)	486
AcsI	RAATTY	1 cut(s)	89
AcuI	CTGAAG	1 cut(s)	438
AgsI	TTSAA	4 cut(s)	88, 94, 109, 213
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	5 cut(s)	115, 220, 251, 323, 377
AluI	AGCT	5 cut(s)	115, 220, 251, 323, 377
Alw26I	GTCTC	1 cut(s)	154
AlwI	GGATC	1 cut(s)	486
AlwNI	CAGNNNCTG	3 cut(s)	203, 251, 416
ApeKI	GCWGC	3 cut(s)	248, 263, 320
ApoI	RAATTY	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	200
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	260, 275, 332
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	154
BfaI	CTAG	1 cut(s)	116
BisI	GCNGC	3 cut(s)	249, 264, 321
BlsI	GCNGC	3 cut(s)	250, 265, 322
Bme1390I	CCNGG	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	204
BmsI	GCATC	3 cut(s)	403, 430, 464
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	88
BsaI	GGTCTC	1 cut(s)	154
BseBI	CCWGG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	135
BseXI	GCAGC	3 cut(s)	260, 275, 332
BsgI	GTGCAG	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	47, 377
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	2 cut(s)	47, 377
Bso31I	GGTCTC	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	76, 478
BspACI	CCGC	1 cut(s)	467
BspCNI	CTCAG	1 cut(s)	136
BspPI	GGATC	1 cut(s)	486
BspTNI	GGTCTC	1 cut(s)	154
BssMI	GATC	2 cut(s)	76, 478
Bst2UI	CCWGG	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	144, 156
BstKTI	GATC	2 cut(s)	79, 481
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	2 cut(s)	76, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	202
BstV1I	GCAGC	3 cut(s)	260, 275, 332
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
Cac8I	GCNNGC	1 cut(s)	42
CaiI	CAGNNNCTG	3 cut(s)	203, 251, 416
Cfr13I	GGNCC	1 cut(s)	200
CviAII	CATG	1 cut(s)	470
DdeI	CTNAG	2 cut(s)	144, 156
DpnI	GATC	2 cut(s)	78, 480
DpnII	GATC	2 cut(s)	76, 478
Eco31I	GGTCTC	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	438
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	202
EcoT22I	ATGCAT	2 cut(s)	445, 457
FaeI	CATG	1 cut(s)	473
FaiI	YATR	8 cut(s)	224, 236, 335, 353, 451, 453, 471, 485
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	2 cut(s)	47, 377
FatI	CATG	1 cut(s)	469
Fnu4HI	GCNGC	3 cut(s)	249, 264, 321
Fsp4HI	GCNGC	3 cut(s)	249, 264, 321
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	3 cut(s)	249, 264, 321
Hin1II	CATG	1 cut(s)	473
HinfI	GANTC	2 cut(s)	119, 463
Hpy188I	TCNGA	4 cut(s)	81, 102, 496, 503
Hpy188III	TCNNGA	3 cut(s)	151, 193, 476
HpyAV	CCTTC	4 cut(s)	55, 220, 300, 413
HpyCH4V	TGCA	3 cut(s)	263, 443, 455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	2 cut(s)	144, 156
Hsp92II	CATG	1 cut(s)	473
Kzo9I	GATC	2 cut(s)	76, 478
LpnPI	CCDG	8 cut(s)	156, 183, 189, 216, 279, 333, 444, 461
Lsp1109I	GCAGC	3 cut(s)	260, 275, 332
LweI	GCATC	3 cut(s)	403, 430, 464
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	2 cut(s)	52, 370
MalI	GATC	2 cut(s)	78, 480
MboI	GATC	2 cut(s)	76, 478
MboII	GAAGA	1 cut(s)	121
MfeI	CAATTG	1 cut(s)	213
MflI	RGATCY	1 cut(s)	478
MluCI	AATT	2 cut(s)	89, 213
MnlI	CCTC	7 cut(s)	63, 139, 154, 233, 295, 348, 391
Mph1103I	ATGCAT	2 cut(s)	445, 457
MspA1I	CMGCKG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	204
MunI	CAATTG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeII	GATC	2 cut(s)	76, 478
NlaIII	CATG	1 cut(s)	473
NmuCI	GTSAC	1 cut(s)	370
NsiI	ATGCAT	2 cut(s)	445, 457
NspI	RCATGY	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	119, 463
PflFI	GACNNNGTC	1 cut(s)	368
PkrI	GCNGC	3 cut(s)	250, 265, 322
PpuMI	RGGWCCY	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	200
PspPPI	RGGWCCY	1 cut(s)	200
PstNI	CAGNNNCTG	3 cut(s)	203, 251, 416
PsuI	RGATCY	1 cut(s)	478
PsyI	GACNNNGTC	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	251
SatI	GCNGC	3 cut(s)	249, 264, 321
Sau3AI	GATC	2 cut(s)	76, 478
Sau96I	GGNCC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	204
SfaNI	GCATC	3 cut(s)	403, 430, 464
SinI	GGWCC	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	2 cut(s)	89, 213
SsiI	CCGC	1 cut(s)	467
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	202
TaqI	TCGA	1 cut(s)	152
TasI	AATT	2 cut(s)	89, 213
TfiI	GAWTC	2 cut(s)	119, 463
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	3 cut(s)	248, 263, 320
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	4 cut(s)	17, 239, 296, 301
TspGWI	ACGGA	1 cut(s)	40
Tth111I	GACNNNGTC	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	1 cut(s)	89
XceI	RCATGY	1 cut(s)	473
XspI	CTAG	1 cut(s)	116
Zsp2I	ATGCAT	2 cut(s)	445, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.