Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003651.1

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Reverse (-)

5232 .. 7313

Gene Structure 2082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003651.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgctttcaattcaatggcgaggtcattcgtgcgagtttcgttttgtccgagcgcaatttcgattcaactcagatgctttctcttatctactgacggagagttcgcgtcttgggtcagttctcaacctctttttgcttggttctgttttgggcttcttgtttttactggtagattggcgcaggcctctggccttgccggttagggttgttgaccctctgggtttggggatggagacggtgggaatacaggctcgggtgttgatcttcttcatggaattgggaatgcgagctttgtgtttgtggtggtgggtgatgtgtggtcaacgacgattggggtccagtatcggcagcgacatgtcgaccctggtggtggctcttgtttggacctcaattcatggcctttttttttgtggcaggtctgttcagctcactttcgcgacgaaagagattgatgtaacggaatggaaagggtacctacttgcggttggtgttacagagaaggacttgaggaaagatcagaactcaatattagaaaatccgatattgaagaagctggattcttgtttgggtggggtgttggctgaggtctcgactaaggaggacttcacaagaaatggtggctacaacatcaagacaggatttggctgttcaattgagcttatgaaggttgatatgggaggttcagcagctgtattaggtgcagcaaaagccattggtcaaatcaaaccttctggtgtagaggttcatttcattgtcgcagcttgtgagaatatgataagtggaacaggtatgaggcctggggacattgtcacagcttctaatggaaagaccattgaggtcaataacacagatgctgaaggcagactgactttggcagatgcattagtatatgcatctgggattccgcatgttttggatcttatgttagaatcagacttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

313

Amino Acids

34.26

Weight (kDa)

6.12

Isoelectric Point (pI)

27.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	405
Acc65I	GGTACC	1 cut(s)	471
AccB1I	GGYRCC	1 cut(s)	471
AccI	GTMKAC	1 cut(s)	359
AccII	CGCG	2 cut(s)	106, 437
AciI	CCGC	2 cut(s)	482, 905
AclWI	GGATC	1 cut(s)	924
AcuI	CTGAAG	1 cut(s)	876
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	2 cut(s)	370, 481
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	5 cut(s)	9, 14, 67, 547, 651
AjnI	CCWGG	2 cut(s)	363, 796
AluBI	AGCT	7 cut(s)	290, 427, 553, 658, 689, 761, 815
AluI	AGCT	7 cut(s)	290, 427, 553, 658, 689, 761, 815
Alw26I	GTCTC	2 cut(s)	227, 592
AlwI	GGATC	1 cut(s)	924
AlwNI	CAGNNNCTG	2 cut(s)	689, 854
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	4 cut(s)	182, 189, 397, 794
ApeKI	GCWGC	4 cut(s)	348, 686, 701, 758
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
Asp718I	GGTACC	1 cut(s)	471
AspLEI	GCGC	2 cut(s)	55, 180
AspS9I	GGNCC	2 cut(s)	336, 384
AsuHPI	GGTGA	1 cut(s)	322
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	2 cut(s)	336, 384
BanI	GGYRCC	1 cut(s)	471
BbvCI	CCTCAGC	1 cut(s)	582
BbvI	GCAGC	4 cut(s)	360, 698, 713, 770
BccI	CCATC	1 cut(s)	223
BciT130I	CCWGG	2 cut(s)	365, 798
BcoDI	GTCTC	2 cut(s)	227, 592
BfuAI	ACCTGC	1 cut(s)	405
BisI	GCNGC	4 cut(s)	349, 687, 702, 759
BlsI	GCNGC	4 cut(s)	350, 688, 703, 760
Bme1390I	CCNGG	2 cut(s)	365, 798
Bme18I	GGWCC	2 cut(s)	336, 384
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	2 cut(s)	336, 384
BmiI	GGNNCC	2 cut(s)	337, 473
BmrFI	CCNGG	2 cut(s)	365, 798
BmsI	GCATC	4 cut(s)	64, 841, 868, 902
Bpu10I	CCTNAGC	1 cut(s)	582
BpuEI	CTTGAG	1 cut(s)	526
BsaI	GGTCTC	1 cut(s)	592
BsaJI	CCNNGG	2 cut(s)	363, 797
Bsc4I	CCNNNNNNNGG	2 cut(s)	370, 481
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	2 cut(s)	171, 339
BseBI	CCWGG	2 cut(s)	365, 798
BseDI	CCNNGG	2 cut(s)	363, 797
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	2 cut(s)	370, 481
BseMII	CTCAG	2 cut(s)	84, 573
BseNI	ACTGG	2 cut(s)	171, 339
BseXI	GCAGC	4 cut(s)	360, 698, 713, 770
BsgI	GTGCAG	1 cut(s)	720
Bsh1236I	CGCG	2 cut(s)	106, 437
BshFI	GGCC	4 cut(s)	184, 191, 399, 796
BshNI	GGYRCC	1 cut(s)	471
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	197
BslFI	GGGAC	1 cut(s)	815
BslI	CCNNNNNNNGG	2 cut(s)	370, 481
BsmAI	GTCTC	2 cut(s)	227, 592
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	815
BsmI	GAATGC	1 cut(s)	288
BsnI	GGCC	4 cut(s)	184, 191, 399, 796
Bso31I	GGTCTC	1 cut(s)	592
BsoBI	CYCGRG	1 cut(s)	252
Bsp143I	GATC	3 cut(s)	261, 514, 916
Bsp68I	TCGCGA	1 cut(s)	437
BspACI	CCGC	2 cut(s)	482, 905
BspANI	GGCC	4 cut(s)	184, 191, 399, 796
BspCNI	CTCAG	2 cut(s)	83, 574
BspFNI	CGCG	2 cut(s)	106, 437
BspLI	GGNNCC	2 cut(s)	337, 473
BspMI	ACCTGC	1 cut(s)	405
BspPI	GGATC	1 cut(s)	924
BspT107I	GGYRCC	1 cut(s)	471
BspTNI	GGTCTC	1 cut(s)	592
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	2 cut(s)	171, 339
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	363, 797
BssMI	GATC	3 cut(s)	261, 514, 916
Bst2UI	CCWGG	2 cut(s)	365, 798
Bst4CI	ACNGT	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	182, 288
BstDEI	CTNAG	3 cut(s)	70, 582, 594
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	2 cut(s)	106, 437
BstHHI	GCGC	2 cut(s)	55, 180
BstKTI	GATC	3 cut(s)	264, 517, 919
BstMAI	GTCTC	2 cut(s)	227, 592
BstMBI	GATC	3 cut(s)	261, 514, 916
BstMWI	GCNNNNNNNGC	1 cut(s)	707
BstNI	CCWGG	2 cut(s)	365, 798
BstNSI	RCATGY	2 cut(s)	358, 911
BstSCI	CCNGG	2 cut(s)	363, 796
BstUI	CGCG	2 cut(s)	106, 437
BstV1I	GCAGC	4 cut(s)	360, 698, 713, 770
BstX2I	RGATCY	1 cut(s)	916
BstYI	RGATCY	1 cut(s)	916
BsuRI	GGCC	4 cut(s)	184, 191, 399, 796
BtsCI	GGATG	1 cut(s)	234
BtuMI	TCGCGA	1 cut(s)	437
BveI	ACCTGC	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	182, 288
CaiI	CAGNNNCTG	2 cut(s)	689, 854
CfoI	GCGC	2 cut(s)	55, 180
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	336, 384
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	4 cut(s)	271, 355, 395, 908
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	3 cut(s)	70, 582, 594
DpnI	GATC	3 cut(s)	263, 516, 918
DpnII	GATC	3 cut(s)	261, 514, 916
Eco147I	AGGCCT	2 cut(s)	184, 796
Eco31I	GGTCTC	1 cut(s)	592
Eco47I	GGWCC	2 cut(s)	336, 384
Eco57I	CTGAAG	1 cut(s)	876
Eco88I	CYCGRG	1 cut(s)	252
EcoRII	CCWGG	2 cut(s)	363, 796
EcoT22I	ATGCAT	2 cut(s)	883, 895
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	4 cut(s)	274, 358, 398, 911
FalI	AAGNNNNNCTT	2 cut(s)	587, 619
FaqI	GGGAC	1 cut(s)	815
FatI	CATG	4 cut(s)	270, 354, 394, 907
FblI	GTMKAC	1 cut(s)	359
Fnu4HI	GCNGC	4 cut(s)	349, 687, 702, 759
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	4 cut(s)	349, 687, 702, 759
GlaI	GCGC	2 cut(s)	54, 179
GluI	GCNGC	4 cut(s)	349, 687, 702, 759
HaeIII	GGCC	4 cut(s)	184, 191, 399, 796
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	2 cut(s)	55, 180
Hin1II	CATG	4 cut(s)	274, 358, 398, 911
Hin6I	GCGC	2 cut(s)	53, 178
HinP1I	GCGC	2 cut(s)	53, 178
HincII	GTYRAC	3 cut(s)	211, 323, 360
HindII	GTYRAC	3 cut(s)	211, 323, 360
HinfI	GANTC	4 cut(s)	63, 557, 901, 929
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	3 cut(s)	211, 323, 360
Hpy188I	TCNGA	6 cut(s)	50, 73, 519, 540, 934, 941
Hpy188III	TCNNGA	3 cut(s)	436, 589, 631
Hpy8I	GTNNAC	3 cut(s)	211, 323, 360
Hpy99I	CGWCG	2 cut(s)	330, 442
HpyAV	CCTTC	4 cut(s)	493, 658, 738, 851
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	3 cut(s)	701, 881, 893
HpyF10VI	GCNNNNNNNGC	1 cut(s)	707
HpyF3I	CTNAG	3 cut(s)	70, 582, 594
Hsp92II	CATG	4 cut(s)	274, 358, 398, 911
HspAI	GCGC	2 cut(s)	53, 178
KpnI	GGTACC	1 cut(s)	475
Kzo9I	GATC	3 cut(s)	261, 514, 916
Lsp1109I	GCAGC	4 cut(s)	360, 698, 713, 770
LweI	GCATC	4 cut(s)	64, 841, 868, 902
MaeIII	GTNAC	3 cut(s)	454, 490, 808
MalI	GATC	3 cut(s)	263, 516, 918
MboI	GATC	3 cut(s)	261, 514, 916
MboII	GAAGA	3 cut(s)	256, 259, 559
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	1 cut(s)	916
MluCI	AATT	5 cut(s)	9, 56, 275, 390, 651
Mph1103I	ATGCAT	2 cut(s)	883, 895
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	2 cut(s)	365, 798
MunI	CAATTG	1 cut(s)	651
Mva1269I	GAATGC	1 cut(s)	288
MvaI	CCWGG	2 cut(s)	365, 798
MvnI	CGCG	2 cut(s)	106, 437
MwoI	GCNNNNNNNGC	1 cut(s)	707
NdeII	GATC	3 cut(s)	261, 514, 916
NlaIII	CATG	4 cut(s)	274, 358, 398, 911
NlaIV	GGNNCC	2 cut(s)	337, 473
NmuCI	GTSAC	1 cut(s)	808
NruI	TCGCGA	1 cut(s)	437
NsiI	ATGCAT	2 cut(s)	883, 895
NspI	RCATGY	2 cut(s)	358, 911
PceI	AGGCCT	2 cut(s)	184, 796
PciI	ACATGT	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PctI	GAATGC	1 cut(s)	288
PfeI	GAWTC	4 cut(s)	63, 557, 901, 929
PflFI	GACNNNGTC	1 cut(s)	806
PkrI	GCNGC	4 cut(s)	350, 688, 703, 760
PscI	ACATGT	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	363, 796
PspGI	CCWGG	2 cut(s)	363, 796
PspN4I	GGNNCC	2 cut(s)	337, 473
PspPI	GGNCC	2 cut(s)	336, 384
PstNI	CAGNNNCTG	2 cut(s)	689, 854
PsuI	RGATCY	1 cut(s)	916
PsyI	GACNNNGTC	1 cut(s)	806
PvuII	CAGCTG	1 cut(s)	689
RruI	TCGCGA	1 cut(s)	437
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
SalI	GTCGAC	1 cut(s)	358
SatI	GCNGC	4 cut(s)	349, 687, 702, 759
Sau3AI	GATC	3 cut(s)	261, 514, 916
Sau96I	GGNCC	2 cut(s)	336, 384
ScrFI	CCNGG	2 cut(s)	365, 798
SfaNI	GCATC	4 cut(s)	64, 841, 868, 902
SinI	GGWCC	2 cut(s)	336, 384
SmlI	CTYRAG	1 cut(s)	505
SmoI	CTYRAG	1 cut(s)	505
Sse9I	AATT	5 cut(s)	9, 56, 275, 390, 651
SseBI	AGGCCT	2 cut(s)	184, 796
SsiI	CCGC	2 cut(s)	482, 905
SspI	AATATT	1 cut(s)	528
StuI	AGGCCT	2 cut(s)	184, 796
StyD4I	CCNGG	2 cut(s)	363, 796
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	3 cut(s)	61, 359, 590
TasI	AATT	5 cut(s)	9, 56, 275, 390, 651
TfiI	GAWTC	4 cut(s)	63, 557, 901, 929
TseFI	GTSAC	1 cut(s)	808
TseI	GCWGC	4 cut(s)	348, 686, 701, 758
Tsp45I	GTSAC	1 cut(s)	808
TspDTI	ATGAA	5 cut(s)	259, 383, 677, 734, 739
TspGWI	ACGGA	2 cut(s)	110, 473
Tth111I	GACNNNGTC	1 cut(s)	806
VpaK11BI	GGWCC	2 cut(s)	336, 384
XceI	RCATGY	2 cut(s)	358, 911
XmiI	GTMKAC	1 cut(s)	359
Zsp2I	ATGCAT	2 cut(s)	883, 895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.