Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011831.1

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Forward (+)

22715 .. 25249

Gene Structure 2535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011831.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgaagctcactttcgcgacgaaagagattgatgtaacagaatggaaaggggacctgcttgtggttggtgttacagagaaggacttgaggaacgatcagaactcgaaattcgaaaatccaatattgaagaagctggattcttgtttgggtggggtgttggctgaggtctcgactaaggaggatttcacaggaaagtttggccagtctacggttattaggcttcctggtcttagctcgaagagggttggcttgtttgggcttggacaatctgcttttgacagtggtggctacaacatcaagacaggacctggctgttcaattgagcttatgaaggttgatatgggaggttcagcagttgtattaggtgcagcaaaagccattggtcaaatcaaaccttctggtgtagaggtcagggaaatgttttatcatgcatttaatgggtacatggaccatgctttcccacttaatgaattaaggcctcattcttgtgggggtgaagatagcctcggtggatatgccctaactttgattgatgctttagagacacttgctttacttggtgatcgggacggctttgctgcctctgttgaatggattggtaaaaaccttcagtttaaaataaataagacggtatctgtttttgagggggctgtagccagaggccaaaatgtcaacaacatttatgggctggttgcaaatgaacttatagaagagttttctgaccctatcaatggcgttacatcccctatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

250

Amino Acids

26.78

Weight (kDa)

5.09

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	63
AccI	GTMKAC	1 cut(s)	206
AccII	CGCG	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	1 cut(s)	593
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	3 cut(s)	61, 208, 731
AgsI	TTSAA	3 cut(s)	127, 318, 590
AjnI	CCWGG	2 cut(s)	223, 307
AluBI	AGCT	4 cut(s)	7, 133, 234, 325
AluI	AGCT	4 cut(s)	7, 133, 234, 325
Alw26I	GTCTC	2 cut(s)	172, 536
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	3 cut(s)	199, 476, 661
ApeKI	GCWGC	2 cut(s)	368, 578
ApoI	RAATTY	1 cut(s)	107
AspS9I	GGNCC	3 cut(s)	52, 305, 448
AsuHPI	GGTGA	2 cut(s)	506, 572
AsuII	TTCGAA	1 cut(s)	111
AvaII	GGWCC	3 cut(s)	52, 305, 448
BalI	TGGCCA	1 cut(s)	201
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	380, 565
BceAI	ACGGC	1 cut(s)	586
BciT130I	CCWGG	2 cut(s)	225, 309
BcoDI	GTCTC	2 cut(s)	172, 536
BfmI	CTRYAG	1 cut(s)	651
BfuAI	ACCTGC	1 cut(s)	63
BisI	GCNGC	2 cut(s)	369, 579
BlsI	GCNGC	2 cut(s)	370, 580
Bme1390I	CCNGG	2 cut(s)	225, 309
Bme18I	GGWCC	3 cut(s)	52, 305, 448
BmgT120I	GGNCC	3 cut(s)	52, 305, 448
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	2 cut(s)	225, 309
BmsI	GCATC	1 cut(s)	523
Bpu10I	CCTNAGC	1 cut(s)	162
Bpu14I	TTCGAA	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	106
BsaI	GGTCTC	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	505
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 208, 731
Bse1I	ACTGG	1 cut(s)	202
BseBI	CCWGG	2 cut(s)	225, 309
BseDI	CCNNGG	1 cut(s)	505
BseGI	GGATG	1 cut(s)	740
BseLI	CCNNNNNNNGG	3 cut(s)	61, 208, 731
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	202
BseXI	GCAGC	2 cut(s)	380, 565
BsgI	GTGCAG	1 cut(s)	387
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	3 cut(s)	201, 478, 663
BslFI	GGGAC	2 cut(s)	65, 581
BslI	CCNNNNNNNGG	3 cut(s)	61, 208, 731
BsmAI	GTCTC	2 cut(s)	172, 536
BsmFI	GGGAC	2 cut(s)	65, 581
BsnI	GGCC	3 cut(s)	201, 478, 663
Bso31I	GGTCTC	1 cut(s)	172
Bsp119I	TTCGAA	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	94, 562
Bsp68I	TCGCGA	1 cut(s)	17
BspANI	GGCC	3 cut(s)	201, 478, 663
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	53
BspMI	ACCTGC	1 cut(s)	63
BspT104I	TTCGAA	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	505
BssMI	GATC	2 cut(s)	94, 562
Bst2UI	CCWGG	2 cut(s)	225, 309
Bst4CI	ACNGT	3 cut(s)	211, 281, 631
Bst6I	CTCTTC	2 cut(s)	233, 705
BstBI	TTCGAA	1 cut(s)	111
BstDEI	CTNAG	3 cut(s)	162, 174, 230
BstF5I	GGATG	1 cut(s)	740
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	2 cut(s)	97, 565
BstMAI	GTCTC	2 cut(s)	172, 536
BstMBI	GATC	2 cut(s)	94, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	2 cut(s)	225, 309
BstSCI	CCNGG	2 cut(s)	223, 307
BstSFI	CTRYAG	1 cut(s)	651
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	380, 565
BsuRI	GGCC	3 cut(s)	201, 478, 663
BtsCI	GGATG	1 cut(s)	740
BtsIMutI	CAGTG	1 cut(s)	286
BtuMI	TCGCGA	1 cut(s)	17
BveI	ACCTGC	1 cut(s)	63
CaiI	CAGNNNCTG	1 cut(s)	308
Cfr13I	GGNCC	3 cut(s)	52, 305, 448
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	3 cut(s)	428, 445, 452
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	3 cut(s)	162, 174, 230
DpnI	GATC	2 cut(s)	96, 564
DpnII	GATC	2 cut(s)	94, 562
DraI	TTTAAA	1 cut(s)	616
EaeI	YGGCCR	1 cut(s)	199
Eam1104I	CTCTTC	2 cut(s)	233, 705
EarI	CTCTTC	2 cut(s)	233, 705
Eco147I	AGGCCT	1 cut(s)	478
Eco31I	GGTCTC	1 cut(s)	172
Eco47I	GGWCC	3 cut(s)	52, 305, 448
Eco57I	CTGAAG	1 cut(s)	593
EcoO109I	RGGNCCY	2 cut(s)	52, 305
EcoRII	CCWGG	2 cut(s)	223, 307
EcoT22I	ATGCAT	1 cut(s)	433
FaeI	CATG	3 cut(s)	431, 448, 455
FaiI	YATR	8 cut(s)	329, 341, 429, 446, 453, 516, 684, 707
FaqI	GGGAC	2 cut(s)	65, 581
FatI	CATG	3 cut(s)	427, 444, 451
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	2 cut(s)	369, 579
FokI	GGATG	1 cut(s)	727
Fsp4HI	GCNGC	2 cut(s)	369, 579
GluI	GCNGC	2 cut(s)	369, 579
HaeIII	GGCC	3 cut(s)	201, 478, 663
Hin1II	CATG	3 cut(s)	431, 448, 455
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HinfI	GANTC	1 cut(s)	137
HphI	GGTGA	2 cut(s)	506, 572
Hpy166II	GTNNAC	2 cut(s)	207, 673
Hpy188I	TCNGA	2 cut(s)	99, 721
Hpy188III	TCNNGA	4 cut(s)	16, 169, 298, 566
Hpy8I	GTNNAC	2 cut(s)	207, 673
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	4 cut(s)	73, 325, 405, 617
HpyCH4III	ACNGT	3 cut(s)	211, 281, 631
HpyCH4V	TGCA	3 cut(s)	368, 431, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	3 cut(s)	162, 174, 230
Hsp92II	CATG	3 cut(s)	431, 448, 455
Kzo9I	GATC	2 cut(s)	94, 562
Lsp1109I	GCAGC	2 cut(s)	380, 565
LweI	GCATC	1 cut(s)	523
MaeIII	GTNAC	3 cut(s)	34, 70, 736
MalI	GATC	2 cut(s)	96, 564
MboI	GATC	2 cut(s)	94, 562
MboII	GAAGA	4 cut(s)	139, 250, 509, 722
MfeI	CAATTG	1 cut(s)	318
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	3 cut(s)	107, 318, 470
MluNI	TGGCCA	1 cut(s)	201
Mox20I	TGGCCA	1 cut(s)	201
Mph1103I	ATGCAT	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	201
MseI	TTAA	4 cut(s)	435, 465, 473, 615
MslI	CAYNNNNRTG	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	201
MspR9I	CCNGG	2 cut(s)	225, 309
MunI	CAATTG	1 cut(s)	318
MvaI	CCWGG	2 cut(s)	225, 309
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeII	GATC	2 cut(s)	94, 562
NlaIII	CATG	3 cut(s)	431, 448, 455
NlaIV	GGNNCC	1 cut(s)	53
NruI	TCGCGA	1 cut(s)	17
NsiI	ATGCAT	1 cut(s)	433
NspV	TTCGAA	1 cut(s)	111
PceI	AGGCCT	1 cut(s)	478
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	370, 580
PpuMI	RGGWCCY	2 cut(s)	52, 305
Psp5II	RGGWCCY	2 cut(s)	52, 305
Psp6I	CCWGG	2 cut(s)	223, 307
PspGI	CCWGG	2 cut(s)	223, 307
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	3 cut(s)	52, 305, 448
PspPPI	RGGWCCY	2 cut(s)	52, 305
PstNI	CAGNNNCTG	1 cut(s)	308
RruI	TCGCGA	1 cut(s)	17
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	4 cut(s)	435, 465, 473, 615
SatI	GCNGC	2 cut(s)	369, 579
Sau3AI	GATC	2 cut(s)	94, 562
Sau96I	GGNCC	3 cut(s)	52, 305, 448
ScrFI	CCNGG	2 cut(s)	225, 309
SfaNI	GCATC	1 cut(s)	523
SfcI	CTRYAG	1 cut(s)	651
SfuI	TTCGAA	1 cut(s)	111
SinI	GGWCC	3 cut(s)	52, 305, 448
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	3 cut(s)	107, 318, 470
SseBI	AGGCCT	1 cut(s)	478
SspI	AATATT	1 cut(s)	123
StuI	AGGCCT	1 cut(s)	478
StyD4I	CCNGG	2 cut(s)	223, 307
TaaI	ACNGT	3 cut(s)	211, 281, 631
TaqI	TCGA	4 cut(s)	104, 111, 170, 236
TasI	AATT	3 cut(s)	107, 318, 470
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	4 cut(s)	435, 465, 473, 615
Tru9I	TTAA	4 cut(s)	435, 465, 473, 615
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	2 cut(s)	368, 578
TspDTI	ATGAA	4 cut(s)	17, 344, 483, 714
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	3 cut(s)	52, 305, 448
XapI	RAATTY	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	206
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.