Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Forward (+)

17436274 .. 17452918

Gene Structure 16645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG111500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAAGGAGGGCCTAAGCCTCCAGTACATGTACTTAATTTGTTTCTCATGCCAAAACTCACTTTCGCGACGAAAGAGATTGATGTAACAGAATGGAAAGGGGACCTGCTTGCGGTTGGTGTTACAGAGAAGGACTTGAGGAAAGATCAGAACTCGAAATTTGAAAATCCGATATTGAAGAAGCTGGATTCTTGTTTGGGTGAGGTGTTGGCTGAGGTCTCGACTAAGGAGGACTTCACAGGAAAGTCTGGTCAGTCTACAGTTATTAGGCTTCCTGGTCTTGGCTCGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTTTGACAGTGGTGGCTACAACATCAAGACAGGACCTGGCTGTTCAATTGAGCTTATGAAGGTTGATATGGGAGGTTCAGCAACTGTATTAGGTGCAGCAAAAGCCATTGGTCAAATCAAACCTTCTAGTGTAGAGGTTCATTTCATTGTCGCAGCTTGTGAGAATATGAAAAGTGGAACAGGTATGAGGCCTGGGGACATTGTCACAACTTCTAATGGAAAGACCATTGAGGTCAATAACACAGATGCTGAAGACAGACTGACTTTGGCAGATGCATTAGTATATGCATCTGGGATTCCGCATGTCAGGGAAATGTTTTATCATGCATTTAATGGGTACATGGACCGTGCTTTCCCACTTGATGAATTAAGGCCTCATTCTTGTGGGTGTGAAGATAGGCTCGGTGGATATGCCTTAACTTTGAATAAGGCGGTATCTGTTTTTGAGGGGGCTGTAGCCAGAGGCCAAAATGTCAACAACATTTATGGGCTGAATCTCCACAGCCCAATAGCAATTCCGACTCTAACTCGAGTATCCAATCCCGATAACGACGTTGACGGGGAGGTCGCGGTTGGCGTCGACGATGTTTTAGATGGAGGCGGAGAGGTGACGGCTGGTCGTTGGAGTAAGAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

320

Amino Acids

34.1

Weight (kDa)

5.6

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	39 - 107	9.8e-10	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	100 - 205	2.6e-37	Cytosol aminopeptidase family, catalytic domain
Glyco_hydro_47	PF01532	213 - 249	6.9e-06	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	887
Acc36I	ACCTGC	1 cut(s)	114
AccI	GTMKAC	2 cut(s)	257, 903
AccII	CGCG	2 cut(s)	68, 893
AciI	CCGC	5 cut(s)	113, 623, 755, 893, 924
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	594
AcyI	GRCGYC	1 cut(s)	900
AfaI	GTAC	3 cut(s)	27, 33, 662
AfiI	CCNNNNNNNGG	2 cut(s)	112, 281
AflIII	ACRYGT	1 cut(s)	28
AgsI	TTSAA	4 cut(s)	164, 178, 369, 748
AhdI	GACNNNNNGTC	1 cut(s)	939
AjnI	CCWGG	3 cut(s)	274, 358, 514
AluBI	AGCT	3 cut(s)	184, 376, 479
AluI	AGCT	3 cut(s)	184, 376, 479
Alw26I	GTCTC	1 cut(s)	223
AlwNI	CAGNNNCTG	3 cut(s)	359, 407, 572
Ama87I	CYCGRG	1 cut(s)	852
AoxI	GGCC	4 cut(s)	11, 512, 695, 787
ApeKI	GCWGC	2 cut(s)	419, 476
ApoI	RAATTY	1 cut(s)	158
AspS9I	GGNCC	4 cut(s)	11, 103, 356, 667
AsuHPI	GGTGA	2 cut(s)	212, 943
AvaI	CYCGRG	1 cut(s)	852
AvaII	GGWCC	3 cut(s)	103, 356, 667
BaeI	ACNNNNGTAYC	2 cut(s)	840, 873
BbsI	GAAGAC	1 cut(s)	582
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	431, 488
BccI	CCATC	1 cut(s)	911
BceAI	ACGGC	1 cut(s)	951
BciT130I	CCWGG	3 cut(s)	276, 360, 516
BciVI	GTATCC	1 cut(s)	868
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	450
BfmI	CTRYAG	2 cut(s)	258, 777
BfuAI	ACCTGC	1 cut(s)	114
BfuI	GTATCC	1 cut(s)	868
BisI	GCNGC	2 cut(s)	420, 477
BlsI	GCNGC	2 cut(s)	421, 478
Bme1390I	CCNGG	3 cut(s)	276, 360, 516
Bme18I	GGWCC	3 cut(s)	103, 356, 667
BmeRI	GACNNNNNGTC	1 cut(s)	939
BmeT110I	CYCGRG	1 cut(s)	852
BmgT120I	GGNCC	4 cut(s)	11, 103, 356, 667
BmiI	GGNNCC	1 cut(s)	104
BmrFI	CCNGG	3 cut(s)	276, 360, 516
BmsI	GCATC	3 cut(s)	559, 586, 620
BpiI	GAAGAC	1 cut(s)	582
BpmI	CTGGAG	1 cut(s)	6
Bpu10I	CCTNAGC	2 cut(s)	15, 213
BpuEI	CTTGAG	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	900
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	515
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 281
Bse1I	ACTGG	1 cut(s)	23
BseBI	CCWGG	3 cut(s)	276, 360, 516
BseDI	CCNNGG	1 cut(s)	515
BseLI	CCNNNNNNNGG	2 cut(s)	112, 281
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	23
BseXI	GCAGC	2 cut(s)	431, 488
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	2 cut(s)	68, 893
BshFI	GGCC	4 cut(s)	13, 514, 697, 789
BsiHKCI	CYCGRG	1 cut(s)	852
BslFI	GGGAC	2 cut(s)	116, 533
BslI	CCNNNNNNNGG	2 cut(s)	112, 281
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	2 cut(s)	116, 533
BsnI	GGCC	4 cut(s)	13, 514, 697, 789
Bso31I	GGTCTC	1 cut(s)	223
BsoBI	CYCGRG	1 cut(s)	852
Bsp143I	GATC	1 cut(s)	145
Bsp68I	TCGCGA	1 cut(s)	68
BspACI	CCGC	5 cut(s)	113, 623, 755, 893, 924
BspANI	GGCC	4 cut(s)	13, 514, 697, 789
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	2 cut(s)	68, 893
BspLI	GGNNCC	1 cut(s)	104
BspMI	ACCTGC	1 cut(s)	114
BspTNI	GGTCTC	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	515
BssMI	GATC	1 cut(s)	145
BssNI	GRCGYC	1 cut(s)	900
Bst2UI	CCWGG	3 cut(s)	276, 360, 516
Bst4CI	ACNGT	4 cut(s)	262, 332, 409, 671
Bst6I	CTCTTC	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	900
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	3 cut(s)	15, 213, 225
BstFNI	CGCG	2 cut(s)	68, 893
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNI	CCWGG	3 cut(s)	276, 360, 516
BstNSI	RCATGY	2 cut(s)	32, 629
BstSCI	CCNGG	3 cut(s)	274, 358, 514
BstSFI	CTRYAG	2 cut(s)	258, 777
BstUI	CGCG	2 cut(s)	68, 893
BstV1I	GCAGC	2 cut(s)	431, 488
BstV2I	GAAGAC	1 cut(s)	582
BsuI	GTATCC	1 cut(s)	868
BsuRI	GGCC	4 cut(s)	13, 514, 697, 789
BtsIMutI	CAGTG	1 cut(s)	337
BtuMI	TCGCGA	1 cut(s)	68
BveI	ACCTGC	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	111
CaiI	CAGNNNCTG	3 cut(s)	359, 407, 572
Cfr13I	GGNCC	4 cut(s)	11, 103, 356, 667
CseI	GACGC	1 cut(s)	889
Csp6I	GTAC	3 cut(s)	26, 32, 661
CviAII	CATG	5 cut(s)	29, 49, 626, 647, 664
CviQI	GTAC	3 cut(s)	26, 32, 661
DdeI	CTNAG	3 cut(s)	15, 213, 225
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
DrdI	GACNNNNNNGTC	1 cut(s)	887
DriI	GACNNNNNGTC	1 cut(s)	939
DseDI	GACNNNNNNGTC	1 cut(s)	887
Eam1104I	CTCTTC	1 cut(s)	284
Eam1105I	GACNNNNNGTC	1 cut(s)	939
EarI	CTCTTC	1 cut(s)	284
EciI	GGCGGA	1 cut(s)	939
Eco147I	AGGCCT	2 cut(s)	514, 697
Eco31I	GGTCTC	1 cut(s)	223
Eco47I	GGWCC	3 cut(s)	103, 356, 667
Eco57I	CTGAAG	1 cut(s)	594
Eco88I	CYCGRG	1 cut(s)	852
EcoO109I	RGGNCCY	3 cut(s)	11, 103, 356
EcoRII	CCWGG	3 cut(s)	274, 358, 514
EcoT22I	ATGCAT	3 cut(s)	601, 613, 652
FaeI	CATG	5 cut(s)	32, 52, 629, 650, 667
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	2 cut(s)	116, 533
FatI	CATG	5 cut(s)	28, 48, 625, 646, 663
FblI	GTMKAC	2 cut(s)	257, 903
Fnu4HI	GCNGC	2 cut(s)	420, 477
Fsp4HI	GCNGC	2 cut(s)	420, 477
FspBI	CTAG	1 cut(s)	450
GluI	GCNGC	2 cut(s)	420, 477
GsuI	CTGGAG	1 cut(s)	6
HaeIII	GGCC	4 cut(s)	13, 514, 697, 789
HgaI	GACGC	1 cut(s)	889
Hin1I	GRCGYC	1 cut(s)	900
Hin1II	CATG	5 cut(s)	32, 52, 629, 650, 667
HincII	GTYRAC	3 cut(s)	799, 880, 904
HindII	GTYRAC	3 cut(s)	799, 880, 904
HinfI	GANTC	4 cut(s)	188, 619, 817, 844
HphI	GGTGA	2 cut(s)	212, 943
Hpy166II	GTNNAC	4 cut(s)	258, 799, 880, 904
Hpy188I	TCNGA	3 cut(s)	150, 171, 843
Hpy188III	TCNNGA	4 cut(s)	67, 220, 349, 866
Hpy8I	GTNNAC	4 cut(s)	258, 799, 880, 904
Hpy99I	CGWCG	4 cut(s)	73, 878, 905, 908
HpyAV	CCTTC	3 cut(s)	124, 376, 456
HpyCH4III	ACNGT	4 cut(s)	262, 332, 409, 671
HpyCH4IV	ACGT	1 cut(s)	876
HpyCH4V	TGCA	4 cut(s)	419, 599, 611, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	3 cut(s)	15, 213, 225
HpySE526I	ACGT	1 cut(s)	876
Hsp92I	GRCGYC	1 cut(s)	900
Hsp92II	CATG	5 cut(s)	32, 52, 629, 650, 667
Kzo9I	GATC	1 cut(s)	145
Lsp1109I	GCAGC	2 cut(s)	431, 488
LweI	GCATC	3 cut(s)	559, 586, 620
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	876
MaeIII	GTNAC	4 cut(s)	85, 121, 526, 931
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	4 cut(s)	190, 301, 587, 728
MfeI	CAATTG	1 cut(s)	369
MluCI	AATT	5 cut(s)	37, 158, 369, 689, 837
MlyI	GAGTC	1 cut(s)	838
MmeI	TCCRAC	2 cut(s)	866, 926
Mph1103I	ATGCAT	3 cut(s)	601, 613, 652
MseI	TTAA	4 cut(s)	36, 654, 692, 740
MslI	CAYNNNNRTG	1 cut(s)	705
MspR9I	CCNGG	3 cut(s)	276, 360, 516
MunI	CAATTG	1 cut(s)	369
MvaI	CCWGG	3 cut(s)	276, 360, 516
MvnI	CGCG	2 cut(s)	68, 893
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	5 cut(s)	32, 52, 629, 650, 667
NlaIV	GGNNCC	1 cut(s)	104
NmuCI	GTSAC	2 cut(s)	526, 931
NruI	TCGCGA	1 cut(s)	68
NsiI	ATGCAT	3 cut(s)	601, 613, 652
NspI	RCATGY	2 cut(s)	32, 629
PaeR7I	CTCGAG	1 cut(s)	852
PceI	AGGCCT	2 cut(s)	514, 697
PciI	ACATGT	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	897
PfeI	GAWTC	3 cut(s)	188, 619, 817
PflFI	GACNNNGTC	1 cut(s)	524
PkrI	GCNGC	2 cut(s)	421, 478
PleI	GAGTC	1 cut(s)	838
PpsI	GAGTC	1 cut(s)	838
PpuMI	RGGWCCY	2 cut(s)	103, 356
PscI	ACATGT	1 cut(s)	28
Psp5II	RGGWCCY	2 cut(s)	103, 356
Psp6I	CCWGG	3 cut(s)	274, 358, 514
PspGI	CCWGG	3 cut(s)	274, 358, 514
PspN4I	GGNNCC	1 cut(s)	104
PspPI	GGNCC	4 cut(s)	11, 103, 356, 667
PspPPI	RGGWCCY	2 cut(s)	103, 356
PspXI	VCTCGAGB	1 cut(s)	852
PstNI	CAGNNNCTG	3 cut(s)	359, 407, 572
PsyI	GACNNNGTC	1 cut(s)	524
RruI	TCGCGA	1 cut(s)	68
RsaI	GTAC	3 cut(s)	27, 33, 662
RsaNI	GTAC	3 cut(s)	26, 32, 661
RseI	CAYNNNNRTG	1 cut(s)	705
SalI	GTCGAC	1 cut(s)	902
SaqAI	TTAA	4 cut(s)	36, 654, 692, 740
SatI	GCNGC	2 cut(s)	420, 477
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	4 cut(s)	11, 103, 356, 667
SchI	GAGTC	1 cut(s)	838
ScrFI	CCNGG	3 cut(s)	276, 360, 516
SfaNI	GCATC	3 cut(s)	559, 586, 620
SfcI	CTRYAG	2 cut(s)	258, 777
Sfr274I	CTCGAG	1 cut(s)	852
SgrDI	CGTCGACG	1 cut(s)	902
SinI	GGWCC	3 cut(s)	103, 356, 667
SlaI	CTCGAG	1 cut(s)	852
SmiMI	CAYNNNNRTG	1 cut(s)	705
SmlI	CTYRAG	2 cut(s)	136, 852
SmoI	CTYRAG	2 cut(s)	136, 852
Sse9I	AATT	5 cut(s)	37, 158, 369, 689, 837
SseBI	AGGCCT	2 cut(s)	514, 697
SsiI	CCGC	5 cut(s)	113, 623, 755, 893, 924
SspMI	CTAG	1 cut(s)	450
StuI	AGGCCT	2 cut(s)	514, 697
StyD4I	CCNGG	3 cut(s)	274, 358, 514
TaaI	ACNGT	4 cut(s)	262, 332, 409, 671
TaiI	ACGT	1 cut(s)	879
TaqI	TCGA	5 cut(s)	155, 221, 287, 853, 903
TasI	AATT	5 cut(s)	37, 158, 369, 689, 837
TatI	WGTACW	2 cut(s)	25, 31
TfiI	GAWTC	3 cut(s)	188, 619, 817
Tru1I	TTAA	4 cut(s)	36, 654, 692, 740
Tru9I	TTAA	4 cut(s)	36, 654, 692, 740
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	2 cut(s)	526, 931
TseI	GCWGC	2 cut(s)	419, 476
Tsp45I	GTSAC	2 cut(s)	526, 931
TspDTI	ATGAA	5 cut(s)	395, 452, 457, 506, 702
TspRI	CASTG	1 cut(s)	337
Tth111I	GACNNNGTC	1 cut(s)	524
VpaK11BI	GGWCC	3 cut(s)	103, 356, 667
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	2 cut(s)	32, 629
XhoI	CTCGAG	1 cut(s)	852
XmiI	GTMKAC	2 cut(s)	257, 903
XspI	CTAG	1 cut(s)	450
Zsp2I	ATGCAT	3 cut(s)	601, 613, 652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.