Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Forward (+)

52364181 .. 52365612

Gene Structure 1432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG324100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTTTTATCATGCATTTAATGGGTACATGGACCATGCTTTCCCACTTGATGAATTAAGGCTACATTCTTGTGGGGGTGAAGCTAGCCTCGGTGGATATGCCCTAACTTTGATTGATGCTTTAGAGACACTAGCTTTACTTGGTGATCGGGGCGGCTTTGCTGCCTCTGTTGAATGGATTGGTAAAAACCTTCAGTTTAAAATAGTGAGTATAGTATTTGTCTTTCTTATCACTCCTTGTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATGGTTTCTGAATTGCTTTTTTAAATGTAAGATTTTGATGTTGTGTTTTGGGTTATATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006491 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015923 GO:0015924 GO:0016787 GO:0016798 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0071704 GO:1901135 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

111

Amino Acids

12.3

Weight (kDa)

5.8

Isoelectric Point (pI)

25.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_47	PF01532	1 - 75	6.2e-16	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	173
AluBI	AGCT	2 cut(s)	83, 134
AluI	AGCT	2 cut(s)	83, 134
Alw26I	GTCTC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	89, 155
AsuNHI	GCTAGC	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	2 cut(s)	84, 131
BisI	GCNGC	2 cut(s)	154, 162
BlsI	GCNGC	2 cut(s)	155, 163
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmsI	GCATC	1 cut(s)	106
BmtI	GCTAGC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	88, 272
BseDI	CCNNGG	2 cut(s)	88, 272
BseXI	GCAGC	1 cut(s)	148
BsmAI	GTCTC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	145
Bsp19I	CCATGG	1 cut(s)	272
BspACI	CCGC	1 cut(s)	153
BspOI	GCTAGC	1 cut(s)	87
BssECI	CCNNGG	2 cut(s)	88, 272
BssMI	GATC	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	85
BstDSI	CCRYGG	1 cut(s)	272
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	148
BtgI	CCRYGG	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	5 cut(s)	11, 28, 35, 273, 333
CviJI	RGCY	5 cut(s)	61, 83, 87, 134, 156
CviKI_1	RGCY	5 cut(s)	61, 83, 87, 134, 156
CviQI	GTAC	1 cut(s)	25
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
DraI	TTTAAA	2 cut(s)	199, 295
Eco130I	CCWWGG	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	272
EcoT22I	ATGCAT	2 cut(s)	16, 334
ErhI	CCWWGG	1 cut(s)	272
FaeI	CATG	5 cut(s)	14, 31, 38, 276, 336
FaiI	YATR	9 cut(s)	12, 29, 36, 99, 212, 274, 328, 330, 334
FatI	CATG	5 cut(s)	10, 27, 34, 272, 332
Fnu4HI	GCNGC	2 cut(s)	154, 162
Fsp4HI	GCNGC	2 cut(s)	154, 162
FspBI	CTAG	2 cut(s)	84, 131
GluI	GCNGC	2 cut(s)	154, 162
Hin1II	CATG	5 cut(s)	14, 31, 38, 276, 336
HphI	GGTGA	2 cut(s)	89, 155
Hpy188I	TCNGA	1 cut(s)	282
HpyAV	CCTTC	1 cut(s)	200
HpyCH4V	TGCA	2 cut(s)	14, 332
Hsp92II	CATG	5 cut(s)	14, 31, 38, 276, 336
Kzo9I	GATC	1 cut(s)	145
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	2 cut(s)	84, 131
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MluCI	AATT	2 cut(s)	53, 283
MnlI	CCTC	2 cut(s)	98, 175
Mph1103I	ATGCAT	2 cut(s)	16, 334
MseI	TTAA	4 cut(s)	18, 56, 198, 294
MslI	CAYNNNNRTG	1 cut(s)	69
NcoI	CCATGG	1 cut(s)	272
NdeII	GATC	1 cut(s)	145
NheI	GCTAGC	1 cut(s)	83
NlaIII	CATG	5 cut(s)	14, 31, 38, 276, 336
NsiI	ATGCAT	2 cut(s)	16, 334
PkrI	GCNGC	2 cut(s)	155, 163
PspPI	GGNCC	1 cut(s)	31
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	4 cut(s)	18, 56, 198, 294
SatI	GCNGC	2 cut(s)	154, 162
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	31
SetI	ASST	3 cut(s)	85, 136, 192
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	69
Sse9I	AATT	2 cut(s)	53, 283
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	2 cut(s)	84, 131
StyI	CCWWGG	1 cut(s)	272
TasI	AATT	2 cut(s)	53, 283
TauI	GCSGC	1 cut(s)	156
Tru1I	TTAA	4 cut(s)	18, 56, 198, 294
Tru9I	TTAA	4 cut(s)	18, 56, 198, 294
TseI	GCWGC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	31
XspI	CTAG	2 cut(s)	84, 131
Zsp2I	ATGCAT	2 cut(s)	16, 334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.