Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Reverse (-)

37272829 .. 37274596

Gene Structure 1768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG277300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGAAGCTCACTCTCGCGACGAAAGAGATTGATGTAACGAAATGGAAAGGGGACCTGCTTGCGGTTAGTGTTACAGAGAAGGACTTGAGGAAAGATCAGAACTCGAAATTCGAAAATCCGATATTGAAGAATTTGGATTCTTGTTTGGGTGGGGTGTTGGCTGAGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTTTGACAGTGGTGGCTACAACATCAAGACAGGACTTGGCTGTTCAATTGAGCTTATGAAGGTTGATATGGGAGGTTCAGCAGCTGTATTAGGTGCAGCAAAAGCCATTGGTCAAATCAAACCTTCTGGTGTAGAGGTTCATTTCATTGTCGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGGGACATTGTCATAGCTTCTAATGGAAAGACCATTGAGGTCAGGGAAATGTTTTATCATGCATTTAATGGGTACTTGGACCATGCTTTCCCACTTGATGAATTAAGGCCTCATTCTTGTGGGGGTGAAGATAGCCTCGGTGGATATGCCCTAACTTTGATTGATGCTTTAGAGACACTAGCTTTACTTGGTGATCGGGACGGCTTTGCTGCCTCTGTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

205

Amino Acids

21.71

Weight (kDa)

5.14

Isoelectric Point (pI)

33.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17	PF00883	54 - 147	4.1e-26	Cytosol aminopeptidase family, catalytic domain
Glyco_hydro_47	PF01532	148 - 204	4.1e-14	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	63
AccII	CGCG	1 cut(s)	17
AciI	CCGC	1 cut(s)	62
AcsI	RAATTY	2 cut(s)	107, 130
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	3 cut(s)	127, 246, 614
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	6 cut(s)	7, 253, 284, 356, 410, 575
AluI	AGCT	6 cut(s)	7, 253, 284, 356, 410, 575
Alw26I	GTCTC	1 cut(s)	560
AlwNI	CAGNNNCTG	1 cut(s)	284
AoxI	GGCC	2 cut(s)	389, 500
ApeKI	GCWGC	4 cut(s)	281, 296, 353, 602
ApoI	RAATTY	2 cut(s)	107, 130
AspS9I	GGNCC	2 cut(s)	52, 472
AsuHPI	GGTGA	2 cut(s)	530, 596
AsuII	TTCGAA	1 cut(s)	111
AvaII	GGWCC	2 cut(s)	52, 472
BbvI	GCAGC	4 cut(s)	293, 308, 365, 589
BceAI	ACGGC	1 cut(s)	610
BciT130I	CCWGG	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	560
BfaI	CTAG	1 cut(s)	572
BfuAI	ACCTGC	1 cut(s)	63
BisI	GCNGC	4 cut(s)	282, 297, 354, 603
BlsI	GCNGC	4 cut(s)	283, 298, 355, 604
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	2 cut(s)	52, 472
BmgT120I	GGNCC	2 cut(s)	52, 472
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	1 cut(s)	547
Bpu14I	TTCGAA	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	392, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	2 cut(s)	392, 529
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMII	CTCAG	1 cut(s)	153
BseXI	GCAGC	4 cut(s)	293, 308, 365, 589
BsgI	GTGCAG	1 cut(s)	315
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	391, 502
BslFI	GGGAC	3 cut(s)	65, 410, 605
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	560
BsmFI	GGGAC	3 cut(s)	65, 410, 605
BsnI	GGCC	2 cut(s)	391, 502
Bsp119I	TTCGAA	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	94, 586
Bsp68I	TCGCGA	1 cut(s)	17
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	2 cut(s)	391, 502
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	53
BspMI	ACCTGC	1 cut(s)	63
BspT104I	TTCGAA	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	392, 529
BssMI	GATC	2 cut(s)	94, 586
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	161
BstBI	TTCGAA	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	2 cut(s)	97, 589
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	2 cut(s)	94, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	391
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	4 cut(s)	293, 308, 365, 589
BsuRI	GGCC	2 cut(s)	391, 502
BtsIMutI	CAGTG	1 cut(s)	214
BtuMI	TCGCGA	1 cut(s)	17
BveI	ACCTGC	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	60
CaiI	CAGNNNCTG	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	52, 472
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	2 cut(s)	452, 476
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	2 cut(s)	96, 588
DpnII	GATC	2 cut(s)	94, 586
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco147I	AGGCCT	2 cut(s)	391, 502
Eco47I	GGWCC	2 cut(s)	52, 472
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	391
EcoT22I	ATGCAT	1 cut(s)	457
FaeI	CATG	2 cut(s)	455, 479
FaiI	YATR	8 cut(s)	257, 269, 368, 386, 407, 453, 477, 540
FaqI	GGGAC	3 cut(s)	65, 410, 605
FatI	CATG	2 cut(s)	451, 475
Fnu4HI	GCNGC	4 cut(s)	282, 297, 354, 603
Fsp4HI	GCNGC	4 cut(s)	282, 297, 354, 603
FspBI	CTAG	1 cut(s)	572
GluI	GCNGC	4 cut(s)	282, 297, 354, 603
HaeIII	GGCC	2 cut(s)	391, 502
Hin1II	CATG	2 cut(s)	455, 479
HinfI	GANTC	1 cut(s)	137
HphI	GGTGA	2 cut(s)	530, 596
Hpy188I	TCNGA	2 cut(s)	99, 120
Hpy188III	TCNNGA	3 cut(s)	16, 226, 590
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	3 cut(s)	73, 253, 333
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	2 cut(s)	296, 455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	455, 479
Kzo9I	GATC	2 cut(s)	94, 586
LpnPI	CCDG	7 cut(s)	68, 216, 312, 366, 378, 405, 421
Lsp1109I	GCAGC	4 cut(s)	293, 308, 365, 589
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	1 cut(s)	572
MaeIII	GTNAC	2 cut(s)	34, 70
MalI	GATC	2 cut(s)	96, 588
MboI	GATC	2 cut(s)	94, 586
MboII	GAAGA	3 cut(s)	139, 178, 533
MfeI	CAATTG	1 cut(s)	246
MluCI	AATT	4 cut(s)	107, 130, 246, 494
MnlI	CCTC	9 cut(s)	81, 162, 266, 328, 381, 424, 513, 539, 616
Mph1103I	ATGCAT	1 cut(s)	457
MseI	TTAA	2 cut(s)	459, 497
MslI	CAYNNNNRTG	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	284
MspR9I	CCNGG	1 cut(s)	393
MunI	CAATTG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	393
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	302
NdeII	GATC	2 cut(s)	94, 586
NlaIII	CATG	2 cut(s)	455, 479
NlaIV	GGNNCC	1 cut(s)	53
NruI	TCGCGA	1 cut(s)	17
NsiI	ATGCAT	1 cut(s)	457
NspV	TTCGAA	1 cut(s)	111
PceI	AGGCCT	2 cut(s)	391, 502
PfeI	GAWTC	1 cut(s)	137
PflFI	GACNNNGTC	1 cut(s)	401
PkrI	GCNGC	4 cut(s)	283, 298, 355, 604
PpuMI	RGGWCCY	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	2 cut(s)	52, 472
PspPPI	RGGWCCY	1 cut(s)	52
PstNI	CAGNNNCTG	1 cut(s)	284
PsyI	GACNNNGTC	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	284
RruI	TCGCGA	1 cut(s)	17
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	510
SaqAI	TTAA	2 cut(s)	459, 497
SatI	GCNGC	4 cut(s)	282, 297, 354, 603
Sau3AI	GATC	2 cut(s)	94, 586
Sau96I	GGNCC	2 cut(s)	52, 472
ScrFI	CCNGG	1 cut(s)	393
SfaNI	GCATC	1 cut(s)	547
SfuI	TTCGAA	1 cut(s)	111
SinI	GGWCC	2 cut(s)	52, 472
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	4 cut(s)	107, 130, 246, 494
SseBI	AGGCCT	2 cut(s)	391, 502
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	1 cut(s)	572
StuI	AGGCCT	2 cut(s)	391, 502
StyD4I	CCNGG	1 cut(s)	391
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	2 cut(s)	104, 111
TasI	AATT	4 cut(s)	107, 130, 246, 494
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	459, 497
Tru9I	TTAA	2 cut(s)	459, 497
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	4 cut(s)	281, 296, 353, 602
TspDTI	ATGAA	5 cut(s)	17, 272, 329, 334, 507
TspRI	CASTG	1 cut(s)	214
Tth111I	GACNNNGTC	1 cut(s)	401
VpaK11BI	GGWCC	2 cut(s)	52, 472
XapI	RAATTY	2 cut(s)	107, 130
XspI	CTAG	1 cut(s)	572
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.