Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Forward (+)

52327953 .. 52340607

Gene Structure 12655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG268900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGAGGTTCAGCAGCTGTATTAGGTGCAGCAAAAGCCATTGGTCAAATCAAACCTTCTGGTGTAGAGGTTCATTTCATTGTCGCAGCTTGTGAGAATATGATAAGTGGAACAGGTATGAGGCCTGGGGACACTGTCACAGCTTCTAATGGAAAGACCATTAAGGTCAGGGAAATGTTTTATCATGCATTTAATGGGTACATGGACCATGCTTTCCCACTTGATGAATTAAGGCCTCATTCTTGTGGGGGTGAAGATAGCCTCGGTGGATATGCCATAACTTTGATTGATGCTTTAGAGACACTAGCTTTACTTGGTGATCGAGACGGCTTTGCTGCCTCTGTTGAATGGATTGGTAAAAACCTTCAGTTTAAAATACAGCTTATCACGGCCCAACATGAACCGGAGCTTCGTCATTTACTGTTTGACTCTTTCAGAAACTTCTCCAACCTTTCACGCCACCATTCAAATCGAGGGACAGGTGTCACATGGCAGCACAGTCTCCCACATGCACCAGCGTGTAACTTTATGACCCTTCCTCCATCACCCAACAACGTTTGGAATTTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006491 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015923 GO:0015924 GO:0016787 GO:0016798 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0071704 GO:1901135 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

190

Amino Acids

20.67

Weight (kDa)

6.54

Isoelectric Point (pI)

33.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17	PF00883	1 - 58	4.7e-15	Cytosol aminopeptidase family, catalytic domain
Glyco_hydro_47	PF01532	59 - 126	1.7e-18	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	555
AcsI	RAATTY	1 cut(s)	562
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	1 cut(s)	200
AgsI	TTSAA	3 cut(s)	347, 468, 568
AjnI	CCWGG	1 cut(s)	124
AleI	CACNNNNGTG	1 cut(s)	517
AluBI	AGCT	6 cut(s)	17, 89, 143, 308, 382, 409
AluI	AGCT	6 cut(s)	17, 89, 143, 308, 382, 409
Alw26I	GTCTC	3 cut(s)	293, 318, 506
AlwNI	CAGNNNCTG	1 cut(s)	17
AoxI	GGCC	3 cut(s)	122, 233, 390
ApeKI	GCWGC	5 cut(s)	14, 29, 86, 335, 493
ApoI	RAATTY	1 cut(s)	562
AspS9I	GGNCC	2 cut(s)	205, 391
AsuHPI	GGTGA	3 cut(s)	263, 329, 537
AvaII	GGWCC	1 cut(s)	205
BbvI	GCAGC	5 cut(s)	26, 41, 98, 322, 505
BccI	CCATC	1 cut(s)	550
BceAI	ACGGC	2 cut(s)	343, 405
BciT130I	CCWGG	1 cut(s)	126
BcoDI	GTCTC	3 cut(s)	293, 318, 506
BfaI	CTAG	1 cut(s)	305
BisI	GCNGC	5 cut(s)	15, 30, 87, 336, 494
BlsI	GCNGC	5 cut(s)	16, 31, 88, 337, 495
Bme1390I	CCNGG	1 cut(s)	126
Bme18I	GGWCC	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	205, 391
BmrFI	CCNGG	1 cut(s)	126
BmsI	GCATC	1 cut(s)	280
BoxI	GACNNNNGTC	1 cut(s)	482
BsaJI	CCNNGG	2 cut(s)	125, 262
BsaWI	WCCGGW	1 cut(s)	403
BsaXI	ACNNNNNCTCC	2 cut(s)	523, 553
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	125, 262
BseXI	GCAGC	5 cut(s)	26, 41, 98, 322, 505
BsgI	GTGCAG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	124, 235, 392
BsiSI	CCGG	1 cut(s)	404
BslFI	GGGAC	2 cut(s)	143, 490
BsmAI	GTCTC	3 cut(s)	293, 318, 506
BsmBI	CGTCTC	1 cut(s)	318
BsmFI	GGGAC	2 cut(s)	143, 490
BsnI	GGCC	3 cut(s)	124, 235, 392
Bsp143I	GATC	1 cut(s)	319
BspANI	GGCC	3 cut(s)	124, 235, 392
BssECI	CCNNGG	2 cut(s)	125, 262
BssMI	GATC	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	3 cut(s)	136, 423, 500
BstKTI	GATC	1 cut(s)	322
BstMAI	GTCTC	3 cut(s)	293, 318, 506
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	512
BstPAI	GACNNNNGTC	1 cut(s)	482
BstSCI	CCNGG	1 cut(s)	124
BstV1I	GCAGC	5 cut(s)	26, 41, 98, 322, 505
BsuRI	GGCC	3 cut(s)	124, 235, 392
BtsIMutI	CAGTG	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr13I	GGNCC	2 cut(s)	205, 391
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	6 cut(s)	185, 202, 209, 398, 489, 509
CviQI	GTAC	1 cut(s)	199
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
DraI	TTTAAA	1 cut(s)	373
Eco147I	AGGCCT	2 cut(s)	124, 235
Eco47I	GGWCC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	124
EcoT22I	ATGCAT	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	6 cut(s)	188, 205, 212, 401, 492, 512
FaqI	GGGAC	2 cut(s)	143, 490
FatI	CATG	6 cut(s)	184, 201, 208, 397, 488, 508
Fnu4HI	GCNGC	5 cut(s)	15, 30, 87, 336, 494
Fsp4HI	GCNGC	5 cut(s)	15, 30, 87, 336, 494
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	5 cut(s)	15, 30, 87, 336, 494
HaeIII	GGCC	3 cut(s)	124, 235, 392
HapII	CCGG	1 cut(s)	404
Hin1II	CATG	6 cut(s)	188, 205, 212, 401, 492, 512
HinfI	GANTC	1 cut(s)	428
HpaII	CCGG	1 cut(s)	404
HphI	GGTGA	3 cut(s)	263, 329, 537
Hpy188I	TCNGA	1 cut(s)	437
Hpy188III	TCNNGA	1 cut(s)	323
HpyAV	CCTTC	3 cut(s)	66, 374, 545
HpyCH4III	ACNGT	3 cut(s)	136, 423, 500
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	3 cut(s)	29, 188, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	6 cut(s)	188, 205, 212, 401, 492, 512
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	8 cut(s)	45, 99, 111, 138, 154, 417, 465, 528
Lsp1109I	GCAGC	5 cut(s)	26, 41, 98, 322, 505
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	1 cut(s)	555
MaeIII	GTNAC	3 cut(s)	136, 484, 521
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	1 cut(s)	266
MluCI	AATT	2 cut(s)	227, 562
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	7 cut(s)	61, 114, 246, 272, 349, 467, 549
Mph1103I	ATGCAT	1 cut(s)	190
MseI	TTAA	4 cut(s)	162, 192, 230, 372
MslI	CAYNNNNRTG	2 cut(s)	243, 517
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	1 cut(s)	404
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	6 cut(s)	188, 205, 212, 401, 492, 512
NmuCI	GTSAC	2 cut(s)	136, 484
NsiI	ATGCAT	1 cut(s)	190
NspI	RCATGY	1 cut(s)	512
OliI	CACNNNNGTG	1 cut(s)	517
PceI	AGGCCT	2 cut(s)	124, 235
PflFI	GACNNNGTC	1 cut(s)	134
PkrI	GCNGC	5 cut(s)	16, 31, 88, 337, 495
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PshAI	GACNNNNGTC	1 cut(s)	482
Psp1406I	AACGTT	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspPI	GGNCC	2 cut(s)	205, 391
PstNI	CAGNNNCTG	1 cut(s)	17
PsyI	GACNNNGTC	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	2 cut(s)	243, 517
SaqAI	TTAA	4 cut(s)	162, 192, 230, 372
SatI	GCNGC	5 cut(s)	15, 30, 87, 336, 494
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	2 cut(s)	205, 391
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	1 cut(s)	126
SfaNI	GCATC	1 cut(s)	280
SinI	GGWCC	1 cut(s)	205
SmiMI	CAYNNNNRTG	2 cut(s)	243, 517
Sse9I	AATT	2 cut(s)	227, 562
SseBI	AGGCCT	2 cut(s)	124, 235
SspMI	CTAG	1 cut(s)	305
StuI	AGGCCT	2 cut(s)	124, 235
StyD4I	CCNGG	1 cut(s)	124
TaaI	ACNGT	3 cut(s)	136, 423, 500
TaiI	ACGT	1 cut(s)	558
TaqI	TCGA	2 cut(s)	322, 472
TasI	AATT	2 cut(s)	227, 562
Tru1I	TTAA	4 cut(s)	162, 192, 230, 372
Tru9I	TTAA	4 cut(s)	162, 192, 230, 372
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	2 cut(s)	136, 484
TseI	GCWGC	5 cut(s)	14, 29, 86, 335, 493
Tsp45I	GTSAC	2 cut(s)	136, 484
TspDTI	ATGAA	4 cut(s)	62, 67, 240, 414
TspRI	CASTG	1 cut(s)	139
Tth111I	GACNNNGTC	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	562
XceI	RCATGY	1 cut(s)	512
XspI	CTAG	1 cut(s)	305
Zsp2I	ATGCAT	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.