Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0002556

Physical Location & Seq

Genomic Coordinates Forward (+)

9526743 .. 9530398

Gene Structure 3656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G004860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGAAACATAAACAAAGCACTAGTTTATCACAATCAAACATTATAAATCCAAATCTCACTTTCGCGACGAAAGAGATTGATGTAATGGAATGGAAAGGGGACCTGCTTGCGGTTGGTGTTACAGAGAAGGACTTGAGGAAAGATCAGAACTCGAAATTCGAAAATCTGATATTGAAGAAGCTGGATTCTTGTTTGGGTGGGGTGTTGGCTGAGGTCTCGACTAAGGAGGACTTTACAGGAAAGTCTGGCCAGTCTACGGTTATTAGGCTTCCTGGTCTTGGCTCGAAGAGGGTTGGCTTGTTTGGGCTTGGACAATCTGCTTTTGACAGTGGTGGCTACAACATCAAGACAGGACCTGGCTGTTCAATTGAGCTTATAAAGGTTGATATGGGAGGTTCAGCAGCTATATTAGGTGCAGCAAAAGCCATTGGTCAAATCAAACCTTCTGGTGTAGAGGTTCATTTCATTGTCGCAGCTTGTGAGAATATGATTAGTGGAACAGGTATGAGGCCTGGGGACATTGTCACAGCTTCTAATGGAAAGACTATTGAGGTAAGGGAAATGTTTTATCATGCATTTAATGGGTACATGGACCATGCTTTCCCACTTGATGAATTAAGGCTTCATTCTTGTGGGGGTGAAGATAGCCTCGGTGGATATGCCCTAACTTTGATTGATGCTTTAGAGACACTAGCTTTACTTGGTGATCGGGGCGGCTTTGCTGCCTCTGTTGAATGGATTGGTAAAAACCTTCAGTTTAAAATATATTTGGAGATAGACCTAATTTCTTGTTTTCTGGAAGATATCTCATTAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006508 GO:0006807 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0010035 GO:0010038 GO:0010150 GO:0016787 GO:0016805 GO:0019538 GO:0030145 GO:0032501 GO:0032502 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070011 GO:0071704 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map00480 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

Peptidase_M17 Peptidase_M17_N

Protein Analysis

272

Amino Acids

29.11

Weight (kDa)

5.31

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17_N	PF02789	38 - 107	1.7e-10	Cytosol aminopeptidase family, N-terminal domain
Peptidase_M17	PF00883	99 - 187	5.7e-25	Cytosol aminopeptidase family, catalytic domain
Glyco_hydro_47	PF01532	188 - 254	2e-15	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002556)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0410691 RchiOBHm_Chr4g0410701 RchiOBHm_Chr5g0035291
rosa_laevigata	RLG00000001607 RLG00000015526 RLG00000023019 RLG00000036605
rosa_multiflora	Rmu_co8131160.1_g000001 Rmu_sc0001785.1_g000010 Rmu_sc0001814.1_g000016 Rmu_sc0001826.1_g000001 Rmu_sc0002000.1_g000002 Rmu_sc0003651.1_g000005 Rmu_sc0011831.1_g000005 Rmu_sc0012973.1_g000002
rosa_roxburghii	Rroxscaffold_4G00299710 Rroxscaffold_7G00196790 Rroxscaffold_7G00217370
rosa_rugosa	Rorug03G0290600 Rorug03G0290700
rosa_samantha	Rh1DG080800 Rh2AG462100 Rh2DG335900 Rh2DG385700 Rh4AG012500 Rh4AG162400 Rh4AG162500 Rh4CG268800 Rh4CG268900 Rh5AG233100 Rh5AG277300 Rh6AG324000 Rh6AG324100 Rh6BG111500 Rh6BG138200 Rh6BG138300 Rh6CG109200 Rh6CG109300 Rh6CG135800
rosa_wichuraiana	Rw4G004860 Rw6G028100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	44, 377
Acc36I	ACCTGC	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	254
AccII	CGCG	1 cut(s)	65
AciI	CCGC	2 cut(s)	110, 714
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	737
AfaI	GTAC	1 cut(s)	587
AfiI	CCNNNNNNNGG	3 cut(s)	109, 256, 278
AgsI	TTSAA	3 cut(s)	175, 366, 734
AhlI	ACTAGT	1 cut(s)	20
AjnI	CCWGG	3 cut(s)	271, 355, 511
AluBI	AGCT	6 cut(s)	181, 373, 404, 476, 530, 695
AluI	AGCT	6 cut(s)	181, 373, 404, 476, 530, 695
Alw26I	GTCTC	2 cut(s)	220, 680
AlwNI	CAGNNNCTG	1 cut(s)	356
AoxI	GGCC	2 cut(s)	247, 509
ApeKI	GCWGC	4 cut(s)	401, 416, 473, 722
ApoI	RAATTY	1 cut(s)	155
AspS9I	GGNCC	3 cut(s)	100, 353, 592
AsuHPI	GGTGA	2 cut(s)	650, 716
AsuII	TTCGAA	1 cut(s)	159
AvaII	GGWCC	3 cut(s)	100, 353, 592
BalI	TGGCCA	1 cut(s)	249
BbvCI	CCTCAGC	1 cut(s)	210
BbvI	GCAGC	4 cut(s)	413, 428, 485, 709
BciT130I	CCWGG	3 cut(s)	273, 357, 513
BcoDI	GTCTC	2 cut(s)	220, 680
BcuI	ACTAGT	1 cut(s)	20
BfaI	CTAG	2 cut(s)	21, 692
BfuAI	ACCTGC	1 cut(s)	111
BisI	GCNGC	5 cut(s)	402, 417, 474, 715, 723
BlsI	GCNGC	5 cut(s)	403, 418, 475, 716, 724
Bme1390I	CCNGG	3 cut(s)	273, 357, 513
Bme18I	GGWCC	3 cut(s)	100, 353, 592
BmgT120I	GGNCC	3 cut(s)	100, 353, 592
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	3 cut(s)	273, 357, 513
BmsI	GCATC	1 cut(s)	667
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	154
BsaI	GGTCTC	1 cut(s)	220
BsaJI	CCNNGG	2 cut(s)	512, 649
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 256, 278
Bse1I	ACTGG	1 cut(s)	250
BseBI	CCWGG	3 cut(s)	273, 357, 513
BseDI	CCNNGG	2 cut(s)	512, 649
BseLI	CCNNNNNNNGG	3 cut(s)	109, 256, 278
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	250
BseXI	GCAGC	4 cut(s)	413, 428, 485, 709
BsgI	GTGCAG	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	2 cut(s)	249, 511
BslFI	GGGAC	2 cut(s)	113, 530
BslI	CCNNNNNNNGG	3 cut(s)	109, 256, 278
BsmAI	GTCTC	2 cut(s)	220, 680
BsmFI	GGGAC	2 cut(s)	113, 530
BsnI	GGCC	2 cut(s)	249, 511
Bso31I	GGTCTC	1 cut(s)	220
Bsp119I	TTCGAA	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	142, 706
Bsp68I	TCGCGA	1 cut(s)	65
BspACI	CCGC	2 cut(s)	110, 714
BspANI	GGCC	2 cut(s)	249, 511
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	65
BspLI	GGNNCC	1 cut(s)	101
BspMI	ACCTGC	1 cut(s)	111
BspT104I	TTCGAA	1 cut(s)	159
BspTNI	GGTCTC	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	512, 649
BssMI	GATC	2 cut(s)	142, 706
Bst2UI	CCWGG	3 cut(s)	273, 357, 513
Bst4CI	ACNGT	2 cut(s)	259, 329
Bst6I	CTCTTC	1 cut(s)	281
BstBI	TTCGAA	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	210, 222
BstFNI	CGCG	1 cut(s)	65
BstKTI	GATC	2 cut(s)	145, 709
BstMAI	GTCTC	2 cut(s)	220, 680
BstMBI	GATC	2 cut(s)	142, 706
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstNI	CCWGG	3 cut(s)	273, 357, 513
BstSCI	CCNGG	3 cut(s)	271, 355, 511
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	4 cut(s)	413, 428, 485, 709
BsuRI	GGCC	2 cut(s)	249, 511
BtsIMutI	CAGTG	1 cut(s)	334
BtuMI	TCGCGA	1 cut(s)	65
BveI	ACCTGC	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	108
CaiI	CAGNNNCTG	1 cut(s)	356
Cfr13I	GGNCC	3 cut(s)	100, 353, 592
Csp6I	GTAC	1 cut(s)	586
CviAII	CATG	3 cut(s)	572, 589, 596
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	2 cut(s)	210, 222
DpnI	GATC	2 cut(s)	144, 708
DpnII	GATC	2 cut(s)	142, 706
DraI	TTTAAA	1 cut(s)	760
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Eco147I	AGGCCT	1 cut(s)	511
Eco31I	GGTCTC	1 cut(s)	220
Eco32I	GATATC	1 cut(s)	805
Eco47I	GGWCC	3 cut(s)	100, 353, 592
Eco57I	CTGAAG	1 cut(s)	737
EcoO109I	RGGNCCY	2 cut(s)	100, 353
EcoRII	CCWGG	3 cut(s)	271, 355, 511
EcoRV	GATATC	1 cut(s)	805
EcoT22I	ATGCAT	1 cut(s)	577
FaeI	CATG	3 cut(s)	575, 592, 599
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	2 cut(s)	113, 530
FatI	CATG	3 cut(s)	571, 588, 595
FblI	GTMKAC	1 cut(s)	254
Fnu4HI	GCNGC	5 cut(s)	402, 417, 474, 715, 723
Fsp4HI	GCNGC	5 cut(s)	402, 417, 474, 715, 723
FspBI	CTAG	2 cut(s)	21, 692
GluI	GCNGC	5 cut(s)	402, 417, 474, 715, 723
HaeIII	GGCC	2 cut(s)	249, 511
Hin1II	CATG	3 cut(s)	575, 592, 599
HinfI	GANTC	1 cut(s)	185
HphI	GGTGA	2 cut(s)	650, 716
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	2 cut(s)	147, 168
Hpy188III	TCNNGA	4 cut(s)	64, 217, 346, 797
Hpy8I	GTNNAC	1 cut(s)	255
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	3 cut(s)	121, 453, 761
HpyCH4III	ACNGT	2 cut(s)	259, 329
HpyCH4V	TGCA	2 cut(s)	416, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	2 cut(s)	210, 222
Hsp92II	CATG	3 cut(s)	575, 592, 599
Kzo9I	GATC	2 cut(s)	142, 706
Lsp1109I	GCAGC	4 cut(s)	413, 428, 485, 709
LweI	GCATC	1 cut(s)	667
MaeI	CTAG	2 cut(s)	21, 692
MaeIII	GTNAC	2 cut(s)	118, 523
MalI	GATC	2 cut(s)	144, 708
MboI	GATC	2 cut(s)	142, 706
MboII	GAAGA	4 cut(s)	187, 298, 653, 812
MfeI	CAATTG	1 cut(s)	366
MlsI	TGGCCA	1 cut(s)	249
MluCI	AATT	4 cut(s)	155, 366, 614, 783
MluNI	TGGCCA	1 cut(s)	249
Mox20I	TGGCCA	1 cut(s)	249
Mph1103I	ATGCAT	1 cut(s)	577
MscI	TGGCCA	1 cut(s)	249
MseI	TTAA	3 cut(s)	579, 617, 759
MslI	CAYNNNNRTG	1 cut(s)	630
Msp20I	TGGCCA	1 cut(s)	249
MspR9I	CCNGG	3 cut(s)	273, 357, 513
MunI	CAATTG	1 cut(s)	366
MvaI	CCWGG	3 cut(s)	273, 357, 513
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	1 cut(s)	422
NdeII	GATC	2 cut(s)	142, 706
NlaIII	CATG	3 cut(s)	575, 592, 599
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	523
NruI	TCGCGA	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	577
NspV	TTCGAA	1 cut(s)	159
PceI	AGGCCT	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	185
PflFI	GACNNNGTC	1 cut(s)	521
PkrI	GCNGC	5 cut(s)	403, 418, 475, 716, 724
PpuMI	RGGWCCY	2 cut(s)	100, 353
PsiI	TTATAA	2 cut(s)	44, 377
Psp5II	RGGWCCY	2 cut(s)	100, 353
Psp6I	CCWGG	3 cut(s)	271, 355, 511
PspGI	CCWGG	3 cut(s)	271, 355, 511
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	3 cut(s)	100, 353, 592
PspPPI	RGGWCCY	2 cut(s)	100, 353
PstNI	CAGNNNCTG	1 cut(s)	356
PsyI	GACNNNGTC	1 cut(s)	521
RruI	TCGCGA	1 cut(s)	65
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
RseI	CAYNNNNRTG	1 cut(s)	630
SaqAI	TTAA	3 cut(s)	579, 617, 759
SatI	GCNGC	5 cut(s)	402, 417, 474, 715, 723
Sau3AI	GATC	2 cut(s)	142, 706
Sau96I	GGNCC	3 cut(s)	100, 353, 592
ScrFI	CCNGG	3 cut(s)	273, 357, 513
SfaNI	GCATC	1 cut(s)	667
SfuI	TTCGAA	1 cut(s)	159
SinI	GGWCC	3 cut(s)	100, 353, 592
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
SpeI	ACTAGT	1 cut(s)	20
Sse9I	AATT	4 cut(s)	155, 366, 614, 783
SseBI	AGGCCT	1 cut(s)	511
SsiI	CCGC	2 cut(s)	110, 714
SspMI	CTAG	2 cut(s)	21, 692
StuI	AGGCCT	1 cut(s)	511
StyD4I	CCNGG	3 cut(s)	271, 355, 511
TaaI	ACNGT	2 cut(s)	259, 329
TaqI	TCGA	4 cut(s)	152, 159, 218, 284
TasI	AATT	4 cut(s)	155, 366, 614, 783
TauI	GCSGC	1 cut(s)	717
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	3 cut(s)	579, 617, 759
Tru9I	TTAA	3 cut(s)	579, 617, 759
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	4 cut(s)	401, 416, 473, 722
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	5 cut(s)	17, 449, 454, 614, 627
TspRI	CASTG	1 cut(s)	334
Tth111I	GACNNNGTC	1 cut(s)	521
VpaK11BI	GGWCC	3 cut(s)	100, 353, 592
XapI	RAATTY	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	254
XspI	CTAG	2 cut(s)	21, 692
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.