RchiOBHm_Chr7g0192511

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002284
Physical Location & Seq
Forward (+)
10970425 .. 10970767
343 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17208

Sequence Viewer

Length: 198 bp
ATGTTGGGTCGGAGGCCGAAGTTGACGGACATAGAACGACAGAGGGTGTGCCGCGTGCATTACTGTTGGGATAATAGGAGCTGCGTTGACCTTCGTATCTTGTCGCACTGGTCTTTGCTTATTCACTTGAATCTTACTTGCGAGCCTGATTCGTACCAACAAAAAGATCGACACAGTACTGAAGAAGGCAATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.78

Weight (kDa)

7.73

Isoelectric Point (pI)

70.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 54
AciI CCGC 1 cut(s) 52
AfaI GTAC 2 cut(s) 155, 178
AgsI TTSAA 1 cut(s) 130
AluBI AGCT 1 cut(s) 81
AluI AGCT 1 cut(s) 81
AoxI GGCC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 81
BaeI ACNNNNGTAYC 2 cut(s) 79, 112
BbvI GCAGC 1 cut(s) 68
BisI GCNGC 2 cut(s) 52, 82
BlsI GCNGC 2 cut(s) 53, 83
BmcAI AGTACT 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 196
BseNI ACTGG 1 cut(s) 113
BseXI GCAGC 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 16
BsnI GGCC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 166
BspACI CCGC 1 cut(s) 52
BspANI GGCC 1 cut(s) 16
BspFNI CGCG 1 cut(s) 54
BsrDI GCAATG 1 cut(s) 196
BsrI ACTGG 1 cut(s) 113
BssMI GATC 1 cut(s) 166
Bst4CI ACNGT 2 cut(s) 65, 176
BstC8I GCNNGC 2 cut(s) 56, 143
BstFNI CGCG 1 cut(s) 54
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 68
BsuRI GGCC 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 56, 143
Csp6I GTAC 2 cut(s) 154, 177
CviJI RGCY 4 cut(s) 16, 81, 145, 195
CviKI_1 RGCY 4 cut(s) 16, 81, 145, 195
CviQI GTAC 2 cut(s) 154, 177
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
FaiI YATR 1 cut(s) 32
Fnu4HI GCNGC 2 cut(s) 52, 82
Fsp4HI GCNGC 2 cut(s) 52, 82
GluI GCNGC 2 cut(s) 52, 82
HaeIII GGCC 1 cut(s) 16
HincII GTYRAC 2 cut(s) 24, 88
HindII GTYRAC 2 cut(s) 24, 88
HinfI GANTC 2 cut(s) 130, 149
Hpy166II GTNNAC 2 cut(s) 24, 88
Hpy188I TCNGA 1 cut(s) 12
Hpy8I GTNNAC 2 cut(s) 24, 88
HpyAV CCTTC 2 cut(s) 101, 179
HpyCH4III ACNGT 2 cut(s) 65, 176
HpyCH4V TGCA 1 cut(s) 58
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 2 cut(s) 94, 159
Lsp1109I GCAGC 1 cut(s) 68
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MboII GAAGA 1 cut(s) 194
MnlI CCTC 2 cut(s) 6, 36
MvnI CGCG 1 cut(s) 54
NdeII GATC 1 cut(s) 166
PfeI GAWTC 2 cut(s) 130, 149
PkrI GCNGC 2 cut(s) 53, 83
RsaI GTAC 2 cut(s) 155, 178
RsaNI GTAC 2 cut(s) 154, 177
SatI GCNGC 2 cut(s) 52, 82
Sau3AI GATC 1 cut(s) 166
ScaI AGTACT 1 cut(s) 178
SetI ASST 2 cut(s) 83, 93
SgeI CNNG 8 cut(s) 65, 67, 112, 121, 139, 150, 154, 158
SsiI CCGC 1 cut(s) 52
TaaI ACNGT 2 cut(s) 65, 176
TaqI TCGA 1 cut(s) 169
TatI WGTACW 1 cut(s) 176
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 2 cut(s) 130, 149
TscAI CASTG 1 cut(s) 113
TseI GCWGC 1 cut(s) 81
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 1 cut(s) 113
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.