Rmu_sc0000190.1_g000029

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000190.1
OG0002284
Physical Location & Seq
Reverse (-)
76914 .. 77845
932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000190.1_g000029.1.cds

Sequence Viewer

Length: 639 bp
atgaaggttgccgaacaacgtgtggctattggcggcgttggacgttctggagaggggtttgtttctgacaaccctgttgttgggttggtgaagggtgcgcccgctaaccagcaagcctttgtgctcaaggtgtgtgagcggcttggatttggtgagaaagagaaaagcaaggtcatcgcgggagatatcgctaagcttgatggtgcccttctcgatgtgaaggagaaattcaagcgtgcggtggacaaaagtatcgccgacaccactaccatcgccaacctcaatgccaagttaacgcaggcgcttacctccaaagagaaagagttgggggactttcagtctgctaggcaggaagagatggcgaagctggcggaggatgagaaggagatggtgcacttagaggagctcaaagatagaggctatttgaactttgacaagataatagctgatcgagccctatcacaacccacacctggagaggatgttgagggttctaaagatgacggtttctcagaaagcggctcttttgatggtagcgcagggagtggttcttttggagaagatgtgaggtctgatggtaatcctgagacttcgacactgaagtgtaaaggtgagaagaaaaagatgggtactcgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

22.7

Weight (kDa)

5.22

Isoelectric Point (pI)

21.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 139
AccII CGCG 1 cut(s) 179
AciI CCGC 7 cut(s) 33, 102, 139, 179, 239, 371, 519
AcsI RAATTY 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 620
AfaI GTAC 1 cut(s) 631
AfiI CCNNNNNNNGG 2 cut(s) 80, 473
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 2 cut(s) 232, 427
AhdI GACNNNNNGTC 1 cut(s) 337
AjnI CCWGG 1 cut(s) 472
AleI CACNNNNGTG 1 cut(s) 601
AluBI AGCT 4 cut(s) 196, 367, 406, 446
AluI AGCT 4 cut(s) 196, 367, 406, 446
Alw21I GWGCWC 3 cut(s) 126, 396, 408
Alw26I GTCTC 1 cut(s) 581
Alw44I GTGCAC 1 cut(s) 392
ApaLI GTGCAC 1 cut(s) 392
ApoI RAATTY 1 cut(s) 227
AspLEI GCGC 3 cut(s) 100, 304, 539
AsuHPI GGTGA 3 cut(s) 100, 164, 623
BaeGI GKGCMC 2 cut(s) 208, 396
BaeI ACNNNNGTAYC 2 cut(s) 235, 268
BanI GGYRCC 1 cut(s) 203
BanII GRGCYC 2 cut(s) 408, 457
Bbv12I GWGCWC 3 cut(s) 126, 396, 408
BccI CCATC 7 cut(s) 194, 278, 352, 382, 524, 569, 619
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BciT130I CCWGG 1 cut(s) 474
BcoDI GTCTC 1 cut(s) 581
BfaI CTAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 305
BisI GCNGC 3 cut(s) 34, 140, 520
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 3 cut(s) 35, 141, 521
Bme1390I CCNGG 1 cut(s) 474
BmeRI GACNNNNNGTC 1 cut(s) 337
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 474
BpmI CTGGAG 2 cut(s) 69, 495
Bpu1102I GCTNAGC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 579
BsaXI ACNNNNNCTCC 4 cut(s) 468, 498, 549, 579
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 473
Bse8I GATNNNNATC 1 cut(s) 579
BseBI CCWGG 1 cut(s) 474
BseGI GGATG 2 cut(s) 382, 487
BseJI GATNNNNATC 1 cut(s) 579
BseLI CCNNNNNNNGG 2 cut(s) 80, 473
BseMII CTCAG 2 cut(s) 525, 576
BseRI GAGGAG 1 cut(s) 416
BseSI GKGCMC 2 cut(s) 208, 396
Bsh1236I CGCG 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 203
BsiHKAI GWGCWC 3 cut(s) 126, 396, 408
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 2 cut(s) 80, 473
BsmAI GTCTC 1 cut(s) 581
BsmFI GGGAC 1 cut(s) 344
Bsp1286I GDGCHC 5 cut(s) 126, 208, 396, 408, 457
Bsp143I GATC 1 cut(s) 448
Bsp1720I GCTNAGC 1 cut(s) 192
BspACI CCGC 7 cut(s) 33, 102, 139, 179, 239, 371, 519
BspCNI CTCAG 2 cut(s) 524, 577
BspFNI CGCG 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 203
BsrBI CCGCTC 1 cut(s) 139
BssMI GATC 1 cut(s) 448
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 1 cut(s) 506
Bst6I CTCTTC 1 cut(s) 348
BstC8I GCNNGC 5 cut(s) 102, 114, 237, 300, 369
BstDEI CTNAG 4 cut(s) 192, 397, 511, 585
BstF5I GGATG 2 cut(s) 382, 487
BstFNI CGCG 1 cut(s) 179
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 3 cut(s) 100, 304, 539
BstKTI GATC 1 cut(s) 451
BstMAI GTCTC 1 cut(s) 581
BstMBI GATC 1 cut(s) 448
BstMWI GCNNNNNNNGC 2 cut(s) 368, 452
BstNI CCWGG 1 cut(s) 474
BstSCI CCNGG 1 cut(s) 472
BstSLI GKGCMC 2 cut(s) 208, 396
BstUI CGCG 1 cut(s) 179
BtgZI GCGATG 2 cut(s) 160, 256
BtsCI GGATG 2 cut(s) 382, 487
BtsIMutI CAGTG 1 cut(s) 596
Cac8I GCNNGC 5 cut(s) 102, 114, 237, 300, 369
CfoI GCGC 3 cut(s) 100, 304, 539
Csp6I GTAC 1 cut(s) 630
CviQI GTAC 1 cut(s) 630
DdeI CTNAG 4 cut(s) 192, 397, 511, 585
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
DriI GACNNNNNGTC 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 348
Eam1105I GACNNNNNGTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 348
EciI GGCGGA 1 cut(s) 386
Ecl136II GAGCTC 1 cut(s) 406
Eco24I GRGCYC 2 cut(s) 408, 457
Eco32I GATATC 1 cut(s) 187
Eco53kI GAGCTC 1 cut(s) 406
Eco57I CTGAAG 1 cut(s) 620
EcoICRI GAGCTC 1 cut(s) 406
EcoRII CCWGG 1 cut(s) 472
EcoRV GATATC 1 cut(s) 187
EcoT38I GRGCYC 2 cut(s) 408, 457
FalI AAGNNNNNCTT 2 cut(s) 508, 540
FaqI GGGAC 1 cut(s) 344
FauI CCCGC 2 cut(s) 109, 172
Fnu4HI GCNGC 3 cut(s) 34, 140, 520
FokI GGATG 2 cut(s) 389, 494
FriOI GRGCYC 2 cut(s) 408, 457
Fsp4HI GCNGC 3 cut(s) 34, 140, 520
FspBI CTAG 1 cut(s) 345
GlaI GCGC 3 cut(s) 99, 303, 538
GluI GCNGC 3 cut(s) 34, 140, 520
GsuI CTGGAG 2 cut(s) 69, 495
HaeII RGCGCY 1 cut(s) 305
HhaI GCGC 3 cut(s) 100, 304, 539
Hin6I GCGC 3 cut(s) 98, 302, 537
HinP1I GCGC 3 cut(s) 98, 302, 537
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HindIII AAGCTT 1 cut(s) 194
HpaI GTTAAC 1 cut(s) 294
HphI GGTGA 3 cut(s) 100, 164, 623
Hpy166II GTNNAC 3 cut(s) 244, 294, 394
Hpy188I TCNGA 3 cut(s) 67, 514, 574
Hpy188III TCNNGA 3 cut(s) 48, 212, 584
Hpy8I GTNNAC 3 cut(s) 244, 294, 394
HpyAV CCTTC 4 cut(s) 85, 214, 218, 376
HpyCH4III ACNGT 1 cut(s) 506
HpyCH4IV ACGT 2 cut(s) 19, 43
HpyCH4V TGCA 1 cut(s) 394
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 452
HpyF3I CTNAG 4 cut(s) 192, 397, 511, 585
HpySE526I ACGT 2 cut(s) 19, 43
HspAI GCGC 3 cut(s) 98, 302, 537
KspAI GTTAAC 1 cut(s) 294
Kzo9I GATC 1 cut(s) 448
LmnI GCTCC 1 cut(s) 403
MaeI CTAG 1 cut(s) 345
MaeII ACGT 2 cut(s) 19, 43
MalI GATC 1 cut(s) 450
MbiI CCGCTC 1 cut(s) 139
MboI GATC 1 cut(s) 448
MboII GAAGA 3 cut(s) 365, 572, 628
MhlI GDGCHC 5 cut(s) 126, 208, 396, 408, 457
MluCI AATT 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 9 cut(s) 46, 290, 319, 367, 394, 410, 472, 481, 561
MseI TTAA 1 cut(s) 293
MslI CAYNNNNRTG 1 cut(s) 601
MspR9I CCNGG 1 cut(s) 474
MvaI CCWGG 1 cut(s) 474
MvnI CGCG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 368, 452
NdeII GATC 1 cut(s) 448
NlaIV GGNNCC 1 cut(s) 205
OliI CACNNNNGTG 1 cut(s) 601
PkrI GCNGC 3 cut(s) 35, 141, 521
Psp124BI GAGCTC 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PspN4I GGNNCC 1 cut(s) 205
RsaI GTAC 1 cut(s) 631
RsaNI GTAC 1 cut(s) 630
RseI CAYNNNNRTG 1 cut(s) 601
SacI GAGCTC 1 cut(s) 408
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 3 cut(s) 34, 140, 520
Sau3AI GATC 1 cut(s) 448
ScrFI CCNGG 1 cut(s) 474
SduI GDGCHC 5 cut(s) 126, 208, 396, 408, 457
SmiMI CAYNNNNRTG 1 cut(s) 601
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 1 cut(s) 227
SsiI CCGC 7 cut(s) 33, 102, 139, 179, 239, 371, 519
SspMI CTAG 1 cut(s) 345
SstI GAGCTC 1 cut(s) 408
StyD4I CCNGG 1 cut(s) 472
TaaI ACNGT 1 cut(s) 506
TaiI ACGT 2 cut(s) 22, 46
TaqI TCGA 3 cut(s) 213, 451, 593
TasI AATT 1 cut(s) 227
TauI GCSGC 3 cut(s) 36, 142, 522
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 1 cut(s) 603
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 603
VneI GTGCAC 1 cut(s) 392
XapI RAATTY 1 cut(s) 227
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.