Rroxscaffold_3G00237340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002284
Physical Location & Seq
Forward (+)
24925304 .. 24929452
4149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00237340.1

Sequence Viewer

Length: 645 bp
ATGGCGGATACCGGAGGCATCAAAGACTACGACAATTTTATGATTGATGAGGCGGCCAAGGTGCAGAAGCGCATCGTCGATCCGCAAACAAGGGAGGTAACGACGGAGGGAGAGGCAAAACTTCCGGCGCCTCCTTTGCATTCTAATCGTGTCAAACTAAAGAAGAAGAAGGCAGGTGGCAAAGAGAAACATGTGGCGGACGAGGGTGAGCAGGAAAATGAAGAGACAGGGTTTGTTCATGAGGTTCCCGCCGATAAATCTCGTGAGAAAGCTACACCCGTTGTCGGAGAAGCGGATGTGGTGGGGGAAGATGCTAAGAGGGAGAAGAGGAAAAAAACGGTGGCGGATAAAGGAGGAGCCAAGCATGGCGGGCAAAAGGTTGTCGGCGGTTCGGTGGGGATGCCGAGGCCATCCGAGAGAGCAAGCCGCCGCGCTGCGAAGAGGAAAATTTTCTCCTCTACCTTTTCTCCAAATCCTTCGAAGAAGATGAAGAAACAAGTTCATACGAATTCAAACAAGGAAAACCAAAAGAGGGTACAAGGAAAAAGAATGAATTACACCGTGAATGAAGATGGAGATGGAGAGCTTGAATCTTGGAAGCAAGCTTCAAATCTTTATGGCTTCAAGGTGGATGATGGCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.63

Weight (kDa)

9.62

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 164
Acc36I ACCTGC 1 cut(s) 164
AccB1I GGYRCC 1 cut(s) 127
AccII CGCG 1 cut(s) 432
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 447, 508
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 1 cut(s) 537
AfiI CCNNNNNNNGG 2 cut(s) 284, 532
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 4 cut(s) 513, 590, 609, 625
AluBI AGCT 3 cut(s) 272, 586, 605
AluI AGCT 3 cut(s) 272, 586, 605
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 1 cut(s) 74
AoxI GGCC 2 cut(s) 54, 407
ApeKI GCWGC 1 cut(s) 434
ApoI RAATTY 2 cut(s) 447, 508
Asp700I GAANNNNTTC 1 cut(s) 449
AspLEI GCGC 3 cut(s) 72, 130, 434
AsuHPI GGTGA 1 cut(s) 218
AsuII TTCGAA 1 cut(s) 479
BanI GGYRCC 1 cut(s) 127
BauI CACGAG 1 cut(s) 261
BbvI GCAGC 1 cut(s) 421
BccI CCATC 4 cut(s) 418, 566, 572, 629
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BcoDI GTCTC 1 cut(s) 218
BfoI RGCGCY 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 164
BisI GCNGC 4 cut(s) 54, 427, 430, 435
BlsI GCNGC 4 cut(s) 55, 428, 431, 436
BmiI GGNNCC 3 cut(s) 129, 246, 358
BmsI GCATC 4 cut(s) 27, 81, 301, 390
Bpu14I TTCGAA 1 cut(s) 479
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 57, 404
BsaWI WCCGGW 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 451, 481
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 532
BseDI CCNNGG 2 cut(s) 57, 404
BseGI GGATG 4 cut(s) 301, 405, 410, 637
BseLI CCNNNNNNNGG 2 cut(s) 284, 532
BseRI GAGGAG 2 cut(s) 369, 445
BseXI GCAGC 1 cut(s) 421
BsgI GTGCAG 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 432
BshFI GGCC 2 cut(s) 56, 409
BshNI GGYRCC 1 cut(s) 127
BsiSI CCGG 2 cut(s) 12, 125
BslI CCNNNNNNNGG 2 cut(s) 284, 532
BsmAI GTCTC 1 cut(s) 218
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 2 cut(s) 56, 409
Bsp119I TTCGAA 1 cut(s) 479
Bsp143I GATC 1 cut(s) 79
BspANI GGCC 2 cut(s) 56, 409
BspFNI CGCG 1 cut(s) 432
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 3 cut(s) 129, 246, 358
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 1 cut(s) 74
BspT104I TTCGAA 1 cut(s) 479
BspT107I GGYRCC 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 57, 404
BssMI GATC 1 cut(s) 79
BssNI GRCGYC 1 cut(s) 128
BssSI CACGAG 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 340, 562
Bst6I CTCTTC 3 cut(s) 216, 320, 434
BstACI GRCGYC 1 cut(s) 128
BstBI TTCGAA 1 cut(s) 479
BstC8I GCNNGC 3 cut(s) 371, 424, 603
BstDEI CTNAG 1 cut(s) 315
BstF5I GGATG 4 cut(s) 301, 405, 410, 637
BstFNI CGCG 1 cut(s) 432
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 3 cut(s) 72, 130, 434
BstKTI GATC 1 cut(s) 82
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 136, 370
BstNSI RCATGY 1 cut(s) 194
BstUI CGCG 1 cut(s) 432
BstV1I GCAGC 1 cut(s) 421
BsuRI GGCC 2 cut(s) 56, 409
BtsCI GGATG 4 cut(s) 301, 405, 410, 637
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 3 cut(s) 371, 424, 603
CciI TCATGA 1 cut(s) 238
CfoI GCGC 3 cut(s) 72, 130, 434
Csp6I GTAC 1 cut(s) 536
CviAII CATG 3 cut(s) 191, 239, 365
CviJI RGCY 8 cut(s) 56, 272, 359, 409, 426, 586, 605, 621
CviKI_1 RGCY 8 cut(s) 56, 272, 359, 409, 426, 586, 605, 621
CviQI GTAC 1 cut(s) 536
DdeI CTNAG 1 cut(s) 315
DinI GGCGCC 1 cut(s) 129
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 3 cut(s) 216, 320, 434
EarI CTCTTC 3 cut(s) 216, 320, 434
EciI GGCGGA 3 cut(s) 20, 212, 359
Eco130I CCWWGG 1 cut(s) 57
EcoRI GAATTC 1 cut(s) 508
EcoT14I CCWWGG 1 cut(s) 57
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 3 cut(s) 194, 242, 368
FaiI YATR 6 cut(s) 41, 192, 240, 366, 504, 618
FatI CATG 3 cut(s) 190, 238, 364
FauI CCCGC 2 cut(s) 256, 362
Fnu4HI GCNGC 4 cut(s) 54, 427, 430, 435
FokI GGATG 3 cut(s) 308, 397, 412
Fsp4HI GCNGC 4 cut(s) 54, 427, 430, 435
GlaI GCGC 3 cut(s) 71, 129, 433
GluI GCNGC 4 cut(s) 54, 427, 430, 435
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 2 cut(s) 56, 409
HapII CCGG 2 cut(s) 12, 125
HhaI GCGC 3 cut(s) 72, 130, 434
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 3 cut(s) 194, 242, 368
Hin6I GCGC 3 cut(s) 70, 128, 432
HinP1I GCGC 3 cut(s) 70, 128, 432
HindIII AAGCTT 1 cut(s) 603
HinfI GANTC 1 cut(s) 590
HpaII CCGG 2 cut(s) 12, 125
HphI GGTGA 1 cut(s) 218
Hpy188I TCNGA 2 cut(s) 287, 415
Hpy188III TCNNGA 2 cut(s) 239, 263
Hpy99I CGWCG 2 cut(s) 80, 106
HpyAV CCTTC 2 cut(s) 163, 486
HpyCH4III ACNGT 2 cut(s) 340, 562
HpyCH4V TGCA 2 cut(s) 64, 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 136, 370
HpyF3I CTNAG 1 cut(s) 315
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 3 cut(s) 194, 242, 368
HspAI GCGC 3 cut(s) 70, 128, 432
KasI GGCGCC 1 cut(s) 127
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 356
LpnPI CCDG 5 cut(s) 25, 138, 159, 197, 213
Lsp1109I GCAGC 1 cut(s) 421
LweI GCATC 4 cut(s) 27, 81, 301, 390
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MluCI AATT 4 cut(s) 34, 447, 508, 553
Mly113I GGCGCC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 265
MroXI GAANNNNTTC 1 cut(s) 449
MspI CCGG 2 cut(s) 12, 125
Mva1269I GAATGC 1 cut(s) 139
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 2 cut(s) 136, 370
NarI GGCGCC 1 cut(s) 128
NdeII GATC 1 cut(s) 79
NlaIII CATG 3 cut(s) 194, 242, 368
NlaIV GGNNCC 3 cut(s) 129, 246, 358
NmeAIII GCCGAG 1 cut(s) 429
NspI RCATGY 1 cut(s) 194
NspV TTCGAA 1 cut(s) 479
PagI TCATGA 1 cut(s) 238
PaqCI CACCTGC 1 cut(s) 164
PciI ACATGT 1 cut(s) 190
PctI GAATGC 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 449
PfeI GAWTC 1 cut(s) 590
PkrI GCNGC 4 cut(s) 55, 428, 431, 436
PluTI GGCGCC 1 cut(s) 131
PscI ACATGT 1 cut(s) 190
PspN4I GGNNCC 3 cut(s) 129, 246, 358
RsaI GTAC 1 cut(s) 537
RsaNI GTAC 1 cut(s) 536
SatI GCNGC 4 cut(s) 54, 427, 430, 435
Sau3AI GATC 1 cut(s) 79
SfaNI GCATC 4 cut(s) 27, 81, 301, 390
SfoI GGCGCC 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 479
Sse9I AATT 4 cut(s) 34, 447, 508, 553
SspDI GGCGCC 1 cut(s) 127
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 2 cut(s) 340, 562
TaqI TCGA 2 cut(s) 78, 479
TasI AATT 4 cut(s) 34, 447, 508, 553
TauI GCSGC 3 cut(s) 56, 429, 432
TfiI GAWTC 1 cut(s) 590
TseI GCWGC 1 cut(s) 434
TspDTI ATGAA 6 cut(s) 227, 234, 491, 503, 566, 582
TspGWI ACGGA 1 cut(s) 119
XapI RAATTY 2 cut(s) 447, 508
XceI RCATGY 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.