Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004481.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Reverse (-)

58260 .. 59691

Gene Structure 1432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004481.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

atggatgatcttcgcgggatcaaggattatgttaattttatgattaacgagactgttaaggttcggaagaagaccgttgaccctgagacaaaggatgtgaccgaagagttagaagaaaatgtcttggaggcccctctgcactctaatcggaacaagttgaagaagaagaaaactagcgataaggaaaaagatgtggaagatgtgggggagttgcggaacaacgtgtggctattggtggcgttggactttctggagaggggtttgtttctagggttggtgaagggtgcacccgctaaccagcaagcctttgtgcttaaggcgtgtgagcggcttggatttggtggtgaggctagattggctcggcctgcggcatcctcgaggttggaaacggggtttgatcaaattttgaaaagtgtcctggatctttttctctatcaaggcttgtcggaggagcgagaattcaagcgtgcggtggacaaaagtatcgcccacaccactaccatccccaacctcaatgccaagttaacgtctgctaggcaagaacagatggcgaagctggcggaggatgagaaggagatggtgcgcttggaggcggaactcaaagatagcggctatttgaactttgacaagataatagctgatcgagcccgatcacaacccacgcctggccaggatgttaagggatctgaagatgacgatttctcagaaagcggctcttctgatggtagagcagggagtggttcttctggagaagatgtgaggtctgatggtaatcttgagacttcgacgctgaagtctaaaggtgagaagaaaaagatgggtactcgtcagcctgtcataaaatgccatcgtgatgatcgtacttctgggtccttcccccatgctgggcaagactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

298

Amino Acids

33.1

Weight (kDa)

5.66

Isoelectric Point (pI)

33.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	793
AbsI	CCTCGAGG	1 cut(s)	376
AccBSI	CCGCTC	1 cut(s)	328
AccII	CGCG	1 cut(s)	15
AclWI	GGATC	3 cut(s)	26, 429, 691
AcoI	YGGCCR	1 cut(s)	667
AcsI	RAATTY	2 cut(s)	402, 458
AcuI	CTGAAG	2 cut(s)	708, 812
AfaI	GTAC	2 cut(s)	823, 862
AfiI	CCNNNNNNNGG	3 cut(s)	665, 884, 885
AflII	CTTAAG	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	4 cut(s)	160, 409, 463, 619
AjnI	CCWGG	3 cut(s)	417, 664, 669
AluBI	AGCT	2 cut(s)	556, 638
AluI	AGCT	2 cut(s)	556, 638
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	3 cut(s)	44, 80, 773
Alw44I	GTGCAC	1 cut(s)	285
AlwI	GGATC	3 cut(s)	26, 429, 691
Ama87I	CYCGRG	1 cut(s)	376
AoxI	GGCC	3 cut(s)	129, 362, 667
ApaLI	GTGCAC	1 cut(s)	285
ApoI	RAATTY	2 cut(s)	402, 458
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	2 cut(s)	130, 870
AsuHPI	GGTGA	3 cut(s)	289, 356, 815
AvaI	CYCGRG	1 cut(s)	376
AvaII	GGWCC	1 cut(s)	870
BaeGI	GKGCMC	1 cut(s)	289
BaeI	ACNNNNGTAYC	2 cut(s)	466, 499
BalI	TGGCCA	1 cut(s)	669
BanII	GRGCYC	1 cut(s)	649
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	289
BccI	CCATC	7 cut(s)	509, 541, 571, 716, 761, 811, 855
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BciT130I	CCWGG	3 cut(s)	419, 666, 671
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	3 cut(s)	44, 80, 773
BfaI	CTAG	5 cut(s)	174, 269, 351, 534, 895
BfrI	CTTAAG	1 cut(s)	314
BisI	GCNGC	4 cut(s)	329, 369, 610, 712
BlsI	GCNGC	4 cut(s)	330, 370, 611, 713
Bme1390I	CCNGG	3 cut(s)	419, 666, 671
Bme18I	GGWCC	1 cut(s)	870
BmeT110I	CYCGRG	1 cut(s)	376
BmgT120I	GGNCC	2 cut(s)	130, 870
BmiI	GGNNCC	2 cut(s)	132, 871
BmrFI	CCNGG	3 cut(s)	419, 666, 671
BmsI	GCATC	1 cut(s)	380
BpiI	GAAGAC	1 cut(s)	77
BpmI	CTGGAG	2 cut(s)	272, 768
BpuEI	CTTGAG	1 cut(s)	797
BsaBI	GATNNNNATC	1 cut(s)	771
BsaXI	ACNNNNNCTCC	2 cut(s)	741, 771
Bsc4I	CCNNNNNNNGG	3 cut(s)	665, 884, 885
Bse8I	GATNNNNATC	1 cut(s)	771
BseBI	CCWGG	3 cut(s)	419, 666, 671
BseGI	GGATG	6 cut(s)	10, 100, 371, 501, 571, 679
BseJI	GATNNNNATC	1 cut(s)	771
BseLI	CCNNNNNNNGG	3 cut(s)	665, 884, 885
BseMII	CTCAG	2 cut(s)	75, 717
BseRI	GAGGAG	1 cut(s)	464
BseSI	GKGCMC	1 cut(s)	289
BseYI	CCCAGC	1 cut(s)	884
BsgI	GTGCAG	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	3 cut(s)	131, 364, 669
BsiHKAI	GWGCWC	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	376
BslI	CCNNNNNNNGG	3 cut(s)	665, 884, 885
BsmAI	GTCTC	3 cut(s)	44, 80, 773
BsnI	GGCC	3 cut(s)	131, 364, 669
BsoBI	CYCGRG	1 cut(s)	376
Bsp1286I	GDGCHC	2 cut(s)	289, 649
Bsp143I	GATC	8 cut(s)	7, 18, 397, 421, 640, 650, 683, 856
BspANI	GGCC	3 cut(s)	131, 364, 669
BspCNI	CTCAG	2 cut(s)	76, 716
BspFNI	CGCG	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	132, 871
BspPI	GGATC	3 cut(s)	26, 429, 691
BspQI	GCTCTTC	1 cut(s)	721
BspTI	CTTAAG	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	328
BssMI	GATC	8 cut(s)	7, 18, 397, 421, 640, 650, 683, 856
Bst2UI	CCWGG	3 cut(s)	419, 666, 671
Bst4CI	ACNGT	2 cut(s)	55, 76
Bst6I	CTCTTC	2 cut(s)	99, 721
BstAFI	CTTAAG	1 cut(s)	314
BstC8I	GCNNGC	4 cut(s)	303, 366, 468, 558
BstDEI	CTNAG	2 cut(s)	84, 703
BstF5I	GGATG	6 cut(s)	10, 100, 371, 501, 571, 679
BstFNI	CGCG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	585
BstKTI	GATC	8 cut(s)	10, 21, 400, 424, 643, 653, 686, 859
BstMAI	GTCTC	3 cut(s)	44, 80, 773
BstMBI	GATC	8 cut(s)	7, 18, 397, 421, 640, 650, 683, 856
BstMWI	GCNNNNNNNGC	4 cut(s)	356, 365, 557, 644
BstNI	CCWGG	3 cut(s)	419, 666, 671
BstSCI	CCNGG	3 cut(s)	417, 664, 669
BstSLI	GKGCMC	1 cut(s)	289
BstUI	CGCG	1 cut(s)	15
BstV2I	GAAGAC	1 cut(s)	77
BstX2I	RGATCY	2 cut(s)	421, 683
BstYI	RGATCY	2 cut(s)	421, 683
BsuRI	GGCC	3 cut(s)	131, 364, 669
BtsCI	GGATG	6 cut(s)	10, 100, 371, 501, 571, 679
Cac8I	GCNNGC	4 cut(s)	303, 366, 468, 558
CfoI	GCGC	1 cut(s)	585
Cfr13I	GGNCC	2 cut(s)	130, 870
CseI	GACGC	1 cut(s)	796
Csp6I	GTAC	2 cut(s)	822, 861
CviAII	CATG	1 cut(s)	881
CviQI	GTAC	2 cut(s)	822, 861
DdeI	CTNAG	2 cut(s)	84, 703
DpnI	GATC	8 cut(s)	9, 20, 399, 423, 642, 652, 685, 858
DpnII	GATC	8 cut(s)	7, 18, 397, 421, 640, 650, 683, 856
DrdI	GACNNNNNNGTC	1 cut(s)	793
DseDI	GACNNNNNNGTC	1 cut(s)	793
EaeI	YGGCCR	1 cut(s)	667
Eam1104I	CTCTTC	2 cut(s)	99, 721
EarI	CTCTTC	2 cut(s)	99, 721
EciI	GGCGGA	2 cut(s)	575, 608
Eco24I	GRGCYC	1 cut(s)	649
Eco47I	GGWCC	1 cut(s)	870
Eco57I	CTGAAG	2 cut(s)	708, 812
Eco88I	CYCGRG	1 cut(s)	376
EcoO109I	RGGNCCY	2 cut(s)	130, 870
EcoRI	GAATTC	1 cut(s)	458
EcoRII	CCWGG	3 cut(s)	417, 664, 669
EcoT38I	GRGCYC	1 cut(s)	649
FaeI	CATG	1 cut(s)	884
FaiI	YATR	4 cut(s)	30, 41, 839, 882
FalI	AAGNNNNNCTT	2 cut(s)	700, 732
FatI	CATG	1 cut(s)	880
FauI	CCCGC	2 cut(s)	8, 298
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	4 cut(s)	329, 369, 610, 712
FokI	GGATG	6 cut(s)	17, 107, 358, 488, 578, 686
FriOI	GRGCYC	1 cut(s)	649
Fsp4HI	GCNGC	4 cut(s)	329, 369, 610, 712
FspBI	CTAG	5 cut(s)	174, 269, 351, 534, 895
GlaI	GCGC	1 cut(s)	584
GluI	GCNGC	4 cut(s)	329, 369, 610, 712
GsaI	CCCAGC	1 cut(s)	888
GsuI	CTGGAG	2 cut(s)	272, 768
HaeIII	GGCC	3 cut(s)	131, 364, 669
HgaI	GACGC	1 cut(s)	796
HhaI	GCGC	1 cut(s)	585
Hin1II	CATG	1 cut(s)	884
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HincII	GTYRAC	2 cut(s)	79, 525
HindII	GTYRAC	2 cut(s)	79, 525
HpaI	GTTAAC	1 cut(s)	525
HphI	GGTGA	3 cut(s)	289, 356, 815
Hpy166II	GTNNAC	4 cut(s)	79, 287, 475, 525
Hpy188I	TCNGA	7 cut(s)	66, 150, 448, 688, 706, 721, 766
Hpy188III	TCNNGA	4 cut(s)	251, 747, 776, 851
Hpy8I	GTNNAC	4 cut(s)	79, 287, 475, 525
Hpy99I	CGWCG	1 cut(s)	790
HpyAV	CCTTC	3 cut(s)	274, 565, 883
HpyCH4III	ACNGT	2 cut(s)	55, 76
HpyCH4IV	ACGT	2 cut(s)	222, 527
HpyCH4V	TGCA	2 cut(s)	139, 287
HpyF10VI	GCNNNNNNNGC	4 cut(s)	356, 365, 557, 644
HpyF3I	CTNAG	2 cut(s)	84, 703
HpySE526I	ACGT	2 cut(s)	222, 527
Hsp92II	CATG	1 cut(s)	884
HspAI	GCGC	1 cut(s)	583
Ksp22I	TGATCA	1 cut(s)	397
KspAI	GTTAAC	1 cut(s)	525
Kzo9I	GATC	8 cut(s)	7, 18, 397, 421, 640, 650, 683, 856
LguI	GCTCTTC	1 cut(s)	721
LmnI	GCTCC	1 cut(s)	451
LweI	GCATC	1 cut(s)	380
MaeI	CTAG	5 cut(s)	174, 269, 351, 534, 895
MaeII	ACGT	2 cut(s)	222, 527
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	8 cut(s)	9, 20, 399, 423, 642, 652, 685, 858
MbiI	CCGCTC	1 cut(s)	328
MboI	GATC	8 cut(s)	7, 18, 397, 421, 640, 650, 683, 856
MflI	RGATCY	2 cut(s)	421, 683
MhlI	GDGCHC	2 cut(s)	289, 649
MlsI	TGGCCA	1 cut(s)	669
MluCI	AATT	3 cut(s)	34, 402, 458
MluNI	TGGCCA	1 cut(s)	669
MmeI	TCCRAC	3 cut(s)	222, 363, 426
Mox20I	TGGCCA	1 cut(s)	669
MscI	TGGCCA	1 cut(s)	669
MseI	TTAA	6 cut(s)	33, 45, 57, 315, 524, 678
MslI	CAYNNNNRTG	1 cut(s)	852
Msp20I	TGGCCA	1 cut(s)	669
MspCI	CTTAAG	1 cut(s)	314
MspR9I	CCNGG	3 cut(s)	419, 666, 671
MvaI	CCWGG	3 cut(s)	419, 666, 671
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	4 cut(s)	356, 365, 557, 644
NdeII	GATC	8 cut(s)	7, 18, 397, 421, 640, 650, 683, 856
NlaIII	CATG	1 cut(s)	884
NlaIV	GGNNCC	2 cut(s)	132, 871
NmeAIII	GCCGAG	1 cut(s)	340
NmuCI	GTSAC	1 cut(s)	97
PaeR7I	CTCGAG	1 cut(s)	376
PciSI	GCTCTTC	1 cut(s)	721
PcsI	WCGNNNNNNNCGW	1 cut(s)	856
PfoI	TCCNGGA	1 cut(s)	417
PkrI	GCNGC	4 cut(s)	330, 370, 611, 713
PpuMI	RGGWCCY	1 cut(s)	870
Psp5II	RGGWCCY	1 cut(s)	870
Psp6I	CCWGG	3 cut(s)	417, 664, 669
PspFI	CCCAGC	1 cut(s)	884
PspGI	CCWGG	3 cut(s)	417, 664, 669
PspN4I	GGNNCC	2 cut(s)	132, 871
PspPI	GGNCC	2 cut(s)	130, 870
PspPPI	RGGWCCY	1 cut(s)	870
PspXI	VCTCGAGB	1 cut(s)	376
PsuI	RGATCY	2 cut(s)	421, 683
RsaI	GTAC	2 cut(s)	823, 862
RsaNI	GTAC	2 cut(s)	822, 861
RseI	CAYNNNNRTG	1 cut(s)	852
SapI	GCTCTTC	1 cut(s)	721
SaqAI	TTAA	6 cut(s)	33, 45, 57, 315, 524, 678
SatI	GCNGC	4 cut(s)	329, 369, 610, 712
Sau3AI	GATC	8 cut(s)	7, 18, 397, 421, 640, 650, 683, 856
Sau96I	GGNCC	2 cut(s)	130, 870
ScrFI	CCNGG	3 cut(s)	419, 666, 671
SduI	GDGCHC	2 cut(s)	289, 649
SetI	ASST	9 cut(s)	63, 225, 383, 513, 530, 558, 640, 764, 805
SfaNI	GCATC	1 cut(s)	380
Sfr274I	CTCGAG	1 cut(s)	376
SinI	GGWCC	1 cut(s)	870
SlaI	CTCGAG	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	852
SmlI	CTYRAG	3 cut(s)	314, 376, 776
SmoI	CTYRAG	3 cut(s)	314, 376, 776
Sse9I	AATT	3 cut(s)	34, 402, 458
SspMI	CTAG	5 cut(s)	174, 269, 351, 534, 895
StyD4I	CCNGG	3 cut(s)	417, 664, 669
TaaI	ACNGT	2 cut(s)	55, 76
TaiI	ACGT	2 cut(s)	225, 530
TaqI	TCGA	3 cut(s)	377, 643, 785
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	3 cut(s)	34, 402, 458
TauI	GCSGC	4 cut(s)	331, 371, 612, 714
Tru1I	TTAA	6 cut(s)	33, 45, 57, 315, 524, 678
Tru9I	TTAA	6 cut(s)	33, 45, 57, 315, 524, 678
TseFI	GTSAC	1 cut(s)	97
Tsp45I	GTSAC	1 cut(s)	97
Vha464I	CTTAAG	1 cut(s)	314
VneI	GTGCAC	1 cut(s)	285
VpaK11BI	GGWCC	1 cut(s)	870
XapI	RAATTY	2 cut(s)	402, 458
XhoI	CTCGAG	1 cut(s)	376
XspI	CTAG	5 cut(s)	174, 269, 351, 534, 895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.