Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019298.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Forward (+)

20677 .. 21566

Gene Structure 890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019298.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atggccgatattggcgggattaaggagcacatcaattttatgattgacgaggcggccaaagtgcggaaacagactgttgatccgcaaacgagggagataacgacgacggaagaagcccagatcttgaaggctccgctacacttgaaccgcggtaatctgaagaagaagaaagcagagagcaaaggaaaaaatatggcgggagagagtgagcaagaggatgaggaggatacggggtttgccttggaggtacccactgatacgttacaggaaaaggtggcaactgttgtcggggaagcaggtataacggagggtgaaggtgaaagggagaggaggacgaaagcaagggccgacatcatggggtcaaaaaatgtcggtccaaggactgttggtggtaccggtagggatgaaacagcaggggggtcaggcgtaccgcagaagatgaagattgtcgcttctacccttccgtcagatgcccccaagaagatgaaggttggagagaggaatgtggcggagaaacatgttgcgaagttcaagcgtgccgtggataagaccatcgccgatactgccacaattgccaaccttaatgccgagttggcggtcctgaagaaggagaaagctgagagagaagatactatcgcccagttgcaagaggctcttaccatcaaagagaaagagttggcaaatttccagtcggctaggcaggagaaaatggctaaattggcagaggatgaaaaagagatggtgctattaacgcttggcagaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

27.76

Weight (kDa)

6.41

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	287
Acc65I	GGTACC	2 cut(s)	247, 392
AccB1I	GGYRCC	2 cut(s)	247, 392
AccII	CGCG	1 cut(s)	150
AclWI	GGATC	1 cut(s)	74
AcoI	YGGCCR	2 cut(s)	3, 54
AcsI	RAATTY	1 cut(s)	682
AcuI	CTGAAG	2 cut(s)	179, 623
AfaI	GTAC	3 cut(s)	249, 394, 429
AfiI	CCNNNNNNNGG	2 cut(s)	63, 607
AflIII	ACRYGT	1 cut(s)	517
AgeI	ACCGGT	1 cut(s)	395
AgsI	TTSAA	3 cut(s)	127, 145, 532
AluBI	AGCT	1 cut(s)	617
AluI	AGCT	1 cut(s)	617
Alw21I	GWGCWC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	3 cut(s)	3, 54, 345
ApoI	RAATTY	1 cut(s)	682
ArsI	GACNNNNNNTTYG	2 cut(s)	674, 706
AsiGI	ACCGGT	1 cut(s)	395
Asp718I	GGTACC	2 cut(s)	247, 392
AspS9I	GGNCC	3 cut(s)	345, 374, 598
AsuHPI	GGTGA	2 cut(s)	323, 329
AvaII	GGWCC	2 cut(s)	374, 598
BanI	GGYRCC	2 cut(s)	247, 392
Bbv12I	GWGCWC	1 cut(s)	30
BccI	CCATC	3 cut(s)	560, 668, 733
BceAI	ACGGC	1 cut(s)	524
BciVI	GTATCC	1 cut(s)	220
BfaI	CTAG	1 cut(s)	696
BfuAI	ACCTGC	1 cut(s)	287
BfuI	GTATCC	1 cut(s)	220
BglI	GCCNNNNNGGC	1 cut(s)	593
BglII	AGATCT	1 cut(s)	120
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme18I	GGWCC	2 cut(s)	374, 598
BmgT120I	GGNCC	3 cut(s)	345, 374, 598
BmiI	GGNNCC	3 cut(s)	132, 249, 394
BmrI	ACTGGG	1 cut(s)	634
BmsI	GCATC	1 cut(s)	460
BmuI	ACTGGG	1 cut(s)	634
BsaJI	CCNNGG	4 cut(s)	148, 240, 377, 540
BsaWI	WCCGGW	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 607
Bse118I	RCCGGY	1 cut(s)	395
Bse1I	ACTGG	2 cut(s)	640, 688
BseDI	CCNNGG	4 cut(s)	148, 240, 377, 540
BseGI	GGATG	3 cut(s)	223, 409, 733
BseLI	CCNNNNNNNGG	2 cut(s)	63, 607
BseMII	CTCAG	1 cut(s)	609
BseNI	ACTGG	2 cut(s)	640, 688
BseRI	GAGGAG	2 cut(s)	236, 343
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	5, 56, 347
BshNI	GGYRCC	2 cut(s)	247, 392
BshTI	ACCGGT	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	30
BsiSI	CCGG	1 cut(s)	396
BslI	CCNNNNNNNGG	2 cut(s)	63, 607
BsnI	GGCC	3 cut(s)	5, 56, 347
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	2 cut(s)	79, 120
BspANI	GGCC	3 cut(s)	5, 56, 347
BspCNI	CTCAG	1 cut(s)	610
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	3 cut(s)	132, 249, 394
BspMI	ACCTGC	1 cut(s)	287
BspPI	GGATC	1 cut(s)	74
BspT107I	GGYRCC	2 cut(s)	247, 392
BsrFI	RCCGGY	1 cut(s)	395
BsrI	ACTGG	2 cut(s)	640, 688
BssAI	RCCGGY	1 cut(s)	395
BssECI	CCNNGG	4 cut(s)	148, 240, 377, 540
BssMI	GATC	2 cut(s)	79, 120
BssT1I	CCWWGG	2 cut(s)	240, 377
Bst4CI	ACNGT	3 cut(s)	76, 283, 385
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	1 cut(s)	618
BstDSI	CCRYGG	2 cut(s)	148, 540
BstENI	CCTNNNNNAGG	1 cut(s)	605
BstF5I	GGATG	3 cut(s)	223, 409, 733
BstFNI	CGCG	1 cut(s)	150
BstKTI	GATC	2 cut(s)	82, 123
BstMBI	GATC	2 cut(s)	79, 120
BstMWI	GCNNNNNNNGC	5 cut(s)	563, 572, 593, 719, 751
BstNSI	RCATGY	1 cut(s)	521
BstUI	CGCG	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	120
BsuI	GTATCC	1 cut(s)	220
BsuRI	GGCC	3 cut(s)	5, 56, 347
BtgI	CCRYGG	2 cut(s)	148, 540
BtgZI	GCGATG	1 cut(s)	538
BtsCI	GGATG	3 cut(s)	223, 409, 733
BtsIMutI	CAGTG	1 cut(s)	252
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	1 cut(s)	537
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	3 cut(s)	345, 374, 598
Cfr42I	CCGCGG	1 cut(s)	151
Csp6I	GTAC	3 cut(s)	248, 393, 428
CspAI	ACCGGT	1 cut(s)	395
CviAII	CATG	2 cut(s)	355, 518
CviJI	RGCY	9 cut(s)	5, 56, 116, 131, 347, 617, 653, 695, 713
CviKI_1	RGCY	9 cut(s)	5, 56, 116, 131, 347, 617, 653, 695, 713
CviQI	GTAC	3 cut(s)	248, 393, 428
DdeI	CTNAG	1 cut(s)	618
DpnI	GATC	2 cut(s)	81, 122
DpnII	GATC	2 cut(s)	79, 120
EaeI	YGGCCR	2 cut(s)	3, 54
EciI	GGCGGA	1 cut(s)	524
Eco130I	CCWWGG	2 cut(s)	240, 377
Eco47I	GGWCC	2 cut(s)	374, 598
Eco57I	CTGAAG	2 cut(s)	179, 623
EcoNI	CCTNNNNNAGG	1 cut(s)	605
EcoT14I	CCWWGG	2 cut(s)	240, 377
ErhI	CCWWGG	2 cut(s)	240, 377
FaeI	CATG	2 cut(s)	358, 521
FaiI	YATR	5 cut(s)	41, 194, 302, 356, 519
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FatI	CATG	2 cut(s)	354, 517
FauI	CCCGC	2 cut(s)	8, 190
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	3 cut(s)	230, 416, 740
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	1 cut(s)	696
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	3 cut(s)	5, 56, 347
HapII	CCGG	1 cut(s)	396
Hin1II	CATG	2 cut(s)	358, 521
HpaII	CCGG	1 cut(s)	396
HphI	GGTGA	2 cut(s)	323, 329
Hpy188I	TCNGA	2 cut(s)	159, 469
Hpy188III	TCNNGA	2 cut(s)	124, 601
Hpy99I	CGWCG	2 cut(s)	106, 109
HpyAV	CCTTC	5 cut(s)	121, 308, 470, 481, 601
HpyCH4III	ACNGT	3 cut(s)	76, 283, 385
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	1 cut(s)	646
HpyF10VI	GCNNNNNNNGC	5 cut(s)	563, 572, 593, 719, 751
HpyF3I	CTNAG	1 cut(s)	618
HpySE526I	ACGT	1 cut(s)	260
Hsp92II	CATG	2 cut(s)	358, 521
KpnI	GGTACC	2 cut(s)	251, 396
KspI	CCGCGG	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	79, 120
LmnI	GCTCC	2 cut(s)	25, 136
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	1 cut(s)	696
MaeII	ACGT	1 cut(s)	260
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	2 cut(s)	81, 122
MboI	GATC	2 cut(s)	79, 120
MboII	GAAGA	9 cut(s)	122, 172, 175, 178, 448, 454, 493, 616, 638
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	1 cut(s)	120
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	4 cut(s)	34, 570, 682, 716
MmeI	TCCRAC	1 cut(s)	472
MseI	TTAA	3 cut(s)	21, 582, 749
MspA1I	CMGCKG	1 cut(s)	150
MspI	CCGG	1 cut(s)	396
MunI	CAATTG	1 cut(s)	570
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	5 cut(s)	563, 572, 593, 719, 751
NdeII	GATC	2 cut(s)	79, 120
NlaIII	CATG	2 cut(s)	358, 521
NlaIV	GGNNCC	3 cut(s)	132, 249, 394
NmeAIII	GCCGAG	1 cut(s)	613
NspI	RCATGY	1 cut(s)	521
PciI	ACATGT	1 cut(s)	517
PinAI	ACCGGT	1 cut(s)	395
PkrI	GCNGC	1 cut(s)	55
PscI	ACATGT	1 cut(s)	517
PspN4I	GGNNCC	3 cut(s)	132, 249, 394
PspPI	GGNCC	3 cut(s)	345, 374, 598
PsuI	RGATCY	1 cut(s)	120
RsaI	GTAC	3 cut(s)	249, 394, 429
RsaNI	GTAC	3 cut(s)	248, 393, 428
SacII	CCGCGG	1 cut(s)	151
SaqAI	TTAA	3 cut(s)	21, 582, 749
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	79, 120
Sau96I	GGNCC	3 cut(s)	345, 374, 598
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	8 cut(s)	249, 263, 276, 301, 319, 492, 582, 619
SfaNI	GCATC	1 cut(s)	460
Sfr303I	CCGCGG	1 cut(s)	151
SgrBI	CCGCGG	1 cut(s)	151
SinI	GGWCC	2 cut(s)	374, 598
Sse9I	AATT	4 cut(s)	34, 570, 682, 716
SspMI	CTAG	1 cut(s)	696
StyI	CCWWGG	2 cut(s)	240, 377
TaaI	ACNGT	3 cut(s)	76, 283, 385
TaiI	ACGT	1 cut(s)	263
TaqII	GACCGA	1 cut(s)	362
TasI	AATT	4 cut(s)	34, 570, 682, 716
TauI	GCSGC	1 cut(s)	56
Tru1I	TTAA	3 cut(s)	21, 582, 749
Tru9I	TTAA	3 cut(s)	21, 582, 749
TscAI	CASTG	1 cut(s)	259
TspDTI	ATGAA	4 cut(s)	420, 455, 500, 744
TspGWI	ACGGA	3 cut(s)	122, 320, 453
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	2 cut(s)	374, 598
XagI	CCTNNNNNAGG	1 cut(s)	605
XapI	RAATTY	1 cut(s)	682
XceI	RCATGY	1 cut(s)	521
XspI	CTAG	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.