Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021048.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Reverse (-)

12699 .. 13614

Gene Structure 916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021048.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atgacggtgggcgacggtgagagggagagaagaacaaaagctggggccgacattggagggtcaaaacatgtcggttcaaaggttgttggcagtactggtggggatgttggcgtaccgcagaagaggaagattgtcatctctacagttccttcagagcccttgaagaagatgaagcttgctgtggataagatcatcgccgatactgccactattgccaaccttaatgccgagctggcggtactgaagaaggagaaaattgagagagaatatactatcgctcagttgcaagaggcgcttaccgccaaagagaaagagttggtggacttccagtcgactaggcaggaagagatggccaaactggtggaggacgagagggagatggtgcgcttggaggtggttgatgcctttaagaaatcaacagagttcaaggcacttctgacggatactggtaaacaaggtgcgatcgccaactttaaagagctcaaagatagcagctacttgaattttgataagatactggctgatagagcccctccaaagttgacgcctggcgaggatgtcattgttgaggatgttgcgggatctgaagatggcggttcctcagaaagtggctcttctaatggtagcgaagagagtggttcttctggagaggatggcacacggtctgatggtaatcctgagactttgacaccgacaagtaaagctgagaagagaaaaatgggctctcatttgcctaaggagaaacgccgctctggtgatcatgtttcggggtccctcggtcaaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

28.1

Weight (kDa)

5.52

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	750
AccI	GTMKAC	1 cut(s)	332
AciI	CCGC	6 cut(s)	116, 236, 300, 578, 594, 748
AclWI	GGATC	1 cut(s)	589
AcoI	YGGCCR	1 cut(s)	351
AcsI	RAATTY	1 cut(s)	502
AcuI	CTGAAG	3 cut(s)	135, 263, 606
AcyI	GRCGYC	1 cut(s)	545
AfaI	GTAC	3 cut(s)	94, 114, 240
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	4 cut(s)	78, 163, 427, 502
AhdI	GACNNNNNGTC	1 cut(s)	328
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	6 cut(s)	41, 175, 232, 481, 495, 704
AluI	AGCT	6 cut(s)	41, 175, 232, 481, 495, 704
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	1 cut(s)	674
AlwI	GGATC	1 cut(s)	589
AoxI	GGCC	2 cut(s)	45, 351
ApeKI	GCWGC	1 cut(s)	492
ApoI	RAATTY	1 cut(s)	502
AsiSI	GCGATCGC	1 cut(s)	465
AspLEI	GCGC	2 cut(s)	295, 387
AspS9I	GGNCC	2 cut(s)	45, 771
AsuHPI	GGTGA	2 cut(s)	29, 767
AvaII	GGWCC	1 cut(s)	771
AxyI	CCTNAGG	1 cut(s)	735
BalI	TGGCCA	1 cut(s)	353
BanII	GRGCYC	4 cut(s)	159, 483, 532, 725
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	504
BccI	CCATC	5 cut(s)	343, 373, 584, 647, 662
BciT130I	CCWGG	1 cut(s)	549
BciVI	GTATCC	1 cut(s)	436
BclI	TGATCA	1 cut(s)	757
BcoDI	GTCTC	1 cut(s)	674
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	141
BfoI	RGCGCY	1 cut(s)	296
BfuI	GTATCC	1 cut(s)	436
BglI	GCCNNNNNGGC	1 cut(s)	233
BisI	GCNGC	2 cut(s)	493, 748
BlsI	GCNGC	2 cut(s)	494, 749
BmcAI	AGTACT	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	549
Bme18I	GGWCC	1 cut(s)	771
BmeRI	GACNNNNNGTC	1 cut(s)	328
BmgT120I	GGNCC	2 cut(s)	45, 771
BmiI	GGNNCC	4 cut(s)	46, 598, 772, 773
BmrFI	CCNGG	1 cut(s)	549
BmsI	GCATC	1 cut(s)	391
BpmI	CTGGAG	1 cut(s)	666
BsaBI	GATNNNNATC	2 cut(s)	134, 672
BsaHI	GRCGYC	1 cut(s)	545
BsaJI	CCNNGG	1 cut(s)	775
Bse1I	ACTGG	5 cut(s)	100, 328, 363, 451, 522
Bse21I	CCTNAGG	1 cut(s)	735
Bse8I	GATNNNNATC	2 cut(s)	134, 672
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	775
BseGI	GGATG	4 cut(s)	109, 562, 577, 658
BseJI	GATNNNNATC	2 cut(s)	134, 672
BseMII	CTCAG	4 cut(s)	293, 615, 669, 696
BseNI	ACTGG	5 cut(s)	100, 328, 363, 451, 522
BseXI	GCAGC	1 cut(s)	504
BseYI	CCCAGC	1 cut(s)	41
Bsh1285I	CGRYCG	1 cut(s)	465
BshFI	GGCC	2 cut(s)	47, 353
BsiEI	CGRYCG	1 cut(s)	465
BsiHKAI	GWGCWC	1 cut(s)	483
BslFI	GGGAC	1 cut(s)	757
BsmAI	GTCTC	1 cut(s)	674
BsmFI	GGGAC	1 cut(s)	757
BsnI	GGCC	2 cut(s)	47, 353
Bsp1286I	GDGCHC	4 cut(s)	159, 483, 532, 725
Bsp143I	GATC	4 cut(s)	189, 462, 581, 757
BspACI	CCGC	6 cut(s)	116, 236, 300, 578, 594, 748
BspANI	GGCC	2 cut(s)	47, 353
BspCNI	CTCAG	4 cut(s)	292, 614, 670, 697
BspLI	GGNNCC	4 cut(s)	46, 598, 772, 773
BspPI	GGATC	1 cut(s)	589
BspQI	GCTCTTC	1 cut(s)	619
BsrBI	CCGCTC	1 cut(s)	750
BsrI	ACTGG	5 cut(s)	100, 328, 363, 451, 522
BssECI	CCNNGG	1 cut(s)	775
BssMI	GATC	4 cut(s)	189, 462, 581, 757
BssNI	GRCGYC	1 cut(s)	545
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	4 cut(s)	7, 17, 145, 663
Bst6I	CTCTTC	5 cut(s)	116, 339, 619, 624, 704
BstACI	GRCGYC	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	177, 234
BstDEI	CTNAG	5 cut(s)	279, 601, 678, 705, 735
BstF5I	GGATG	4 cut(s)	109, 562, 577, 658
BstH2I	RGCGCY	1 cut(s)	296
BstHHI	GCGC	2 cut(s)	295, 387
BstKTI	GATC	4 cut(s)	192, 465, 584, 760
BstMAI	GTCTC	1 cut(s)	674
BstMBI	GATC	4 cut(s)	189, 462, 581, 757
BstMCI	CGRYCG	1 cut(s)	465
BstMWI	GCNNNNNNNGC	6 cut(s)	203, 212, 233, 292, 299, 527
BstNI	CCWGG	1 cut(s)	549
BstNSI	RCATGY	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	547
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	504
BstX2I	RGATCY	1 cut(s)	581
BstXI	CCANNNNNNTGG	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	581
Bsu36I	CCTNAGG	1 cut(s)	735
BsuI	GTATCC	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	47, 353
BtgZI	GCGATG	1 cut(s)	178
BtsCI	GGATG	4 cut(s)	109, 562, 577, 658
Cac8I	GCNNGC	2 cut(s)	177, 234
CfoI	GCGC	2 cut(s)	295, 387
Cfr13I	GGNCC	2 cut(s)	45, 771
CseI	GACGC	1 cut(s)	553
Csp6I	GTAC	3 cut(s)	93, 113, 239
CviAII	CATG	2 cut(s)	68, 761
CviQI	GTAC	3 cut(s)	93, 113, 239
DdeI	CTNAG	5 cut(s)	279, 601, 678, 705, 735
DpnI	GATC	4 cut(s)	191, 464, 583, 759
DpnII	GATC	4 cut(s)	189, 462, 581, 757
DraI	TTTAAA	1 cut(s)	475
DriI	GACNNNNNGTC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	5 cut(s)	116, 339, 619, 624, 704
Eam1105I	GACNNNNNGTC	1 cut(s)	328
EarI	CTCTTC	5 cut(s)	116, 339, 619, 624, 704
Ecl136II	GAGCTC	1 cut(s)	481
Eco24I	GRGCYC	4 cut(s)	159, 483, 532, 725
Eco47I	GGWCC	1 cut(s)	771
Eco53kI	GAGCTC	1 cut(s)	481
Eco57I	CTGAAG	3 cut(s)	135, 263, 606
Eco81I	CCTNAGG	1 cut(s)	735
EcoICRI	GAGCTC	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	771
EcoRII	CCWGG	1 cut(s)	547
EcoT38I	GRGCYC	4 cut(s)	159, 483, 532, 725
FaeI	CATG	2 cut(s)	71, 764
FaiI	YATR	3 cut(s)	69, 270, 762
FalI	AAGNNNNNCTT	4 cut(s)	279, 311, 598, 630
FaqI	GGGAC	1 cut(s)	757
FatI	CATG	2 cut(s)	67, 760
FauI	CCCGC	1 cut(s)	571
FbaI	TGATCA	1 cut(s)	757
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	2 cut(s)	493, 748
FokI	GGATG	4 cut(s)	116, 569, 584, 665
FriOI	GRGCYC	4 cut(s)	159, 483, 532, 725
Fsp4HI	GCNGC	2 cut(s)	493, 748
FspBI	CTAG	1 cut(s)	336
GlaI	GCGC	2 cut(s)	294, 386
GluI	GCNGC	2 cut(s)	493, 748
GsaI	CCCAGC	1 cut(s)	45
GsuI	CTGGAG	1 cut(s)	666
HaeII	RGCGCY	1 cut(s)	296
HaeIII	GGCC	2 cut(s)	47, 353
HgaI	GACGC	1 cut(s)	553
HhaI	GCGC	2 cut(s)	295, 387
Hin1I	GRCGYC	1 cut(s)	545
Hin1II	CATG	2 cut(s)	71, 764
Hin6I	GCGC	2 cut(s)	293, 385
HinP1I	GCGC	2 cut(s)	293, 385
HincII	GTYRAC	2 cut(s)	333, 543
HindII	GTYRAC	2 cut(s)	333, 543
HindIII	AAGCTT	1 cut(s)	173
HphI	GGTGA	2 cut(s)	29, 767
Hpy166II	GTNNAC	4 cut(s)	322, 333, 452, 543
Hpy188I	TCNGA	5 cut(s)	154, 438, 586, 604, 667
Hpy188III	TCNNGA	2 cut(s)	645, 677
Hpy8I	GTNNAC	4 cut(s)	322, 333, 452, 543
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	159, 241
HpyCH4III	ACNGT	4 cut(s)	7, 17, 145, 663
HpyCH4V	TGCA	1 cut(s)	286
HpyF10VI	GCNNNNNNNGC	6 cut(s)	203, 212, 233, 292, 299, 527
HpyF3I	CTNAG	5 cut(s)	279, 601, 678, 705, 735
Hsp92I	GRCGYC	1 cut(s)	545
Hsp92II	CATG	2 cut(s)	71, 764
HspAI	GCGC	2 cut(s)	293, 385
KflI	GGGWCCC	1 cut(s)	771
Ksp22I	TGATCA	1 cut(s)	757
Kzo9I	GATC	4 cut(s)	189, 462, 581, 757
LguI	GCTCTTC	1 cut(s)	619
Lsp1109I	GCAGC	1 cut(s)	504
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	1 cut(s)	336
MalI	GATC	4 cut(s)	191, 464, 583, 759
MbiI	CCGCTC	1 cut(s)	750
MboI	GATC	4 cut(s)	189, 462, 581, 757
MflI	RGATCY	1 cut(s)	581
MhlI	GDGCHC	4 cut(s)	159, 483, 532, 725
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	3 cut(s)	255, 502, 784
MluNI	TGGCCA	1 cut(s)	353
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	3 cut(s)	222, 408, 474
Msp20I	TGGCCA	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	6 cut(s)	203, 212, 233, 292, 299, 527
NdeII	GATC	4 cut(s)	189, 462, 581, 757
NlaIII	CATG	2 cut(s)	71, 764
NlaIV	GGNNCC	4 cut(s)	46, 598, 772, 773
NmeAIII	GCCGAG	1 cut(s)	253
NspI	RCATGY	1 cut(s)	71
PciI	ACATGT	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	619
PkrI	GCNGC	2 cut(s)	494, 749
Ple19I	CGATCG	1 cut(s)	465
PpuMI	RGGWCCY	1 cut(s)	771
PscI	ACATGT	1 cut(s)	67
Psp124BI	GAGCTC	1 cut(s)	483
Psp5II	RGGWCCY	1 cut(s)	771
Psp6I	CCWGG	1 cut(s)	547
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	4 cut(s)	46, 598, 772, 773
PspPI	GGNCC	2 cut(s)	45, 771
PspPPI	RGGWCCY	1 cut(s)	771
PsuI	RGATCY	1 cut(s)	581
PvuI	CGATCG	1 cut(s)	465
RgaI	GCGATCGC	1 cut(s)	465
RsaI	GTAC	3 cut(s)	94, 114, 240
RsaNI	GTAC	3 cut(s)	93, 113, 239
SacI	GAGCTC	1 cut(s)	483
SalI	GTCGAC	1 cut(s)	331
SapI	GCTCTTC	1 cut(s)	619
SaqAI	TTAA	3 cut(s)	222, 408, 474
SatI	GCNGC	2 cut(s)	493, 748
Sau3AI	GATC	4 cut(s)	189, 462, 581, 757
Sau96I	GGNCC	2 cut(s)	45, 771
ScaI	AGTACT	1 cut(s)	94
ScrFI	CCNGG	1 cut(s)	549
SduI	GDGCHC	4 cut(s)	159, 483, 532, 725
SfaAI	GCGATCGC	1 cut(s)	465
SfaNI	GCATC	1 cut(s)	391
SfcI	CTRYAG	1 cut(s)	141
SgfI	GCGATCGC	1 cut(s)	465
SinI	GGWCC	1 cut(s)	771
Sse9I	AATT	3 cut(s)	255, 502, 784
SsiI	CCGC	6 cut(s)	116, 236, 300, 578, 594, 748
SspMI	CTAG	1 cut(s)	336
SstI	GAGCTC	1 cut(s)	483
StyD4I	CCNGG	1 cut(s)	547
TaaI	ACNGT	4 cut(s)	7, 17, 145, 663
TaqI	TCGA	1 cut(s)	332
TaqII	GACCGA	1 cut(s)	767
TasI	AATT	3 cut(s)	255, 502, 784
TatI	WGTACW	1 cut(s)	92
TauI	GCSGC	1 cut(s)	750
Tru1I	TTAA	3 cut(s)	222, 408, 474
Tru9I	TTAA	3 cut(s)	222, 408, 474
TseI	GCWGC	1 cut(s)	492
TspDTI	ATGAA	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	771
XapI	RAATTY	1 cut(s)	502
XceI	RCATGY	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	332
XspI	CTAG	1 cut(s)	336
ZrmI	AGTACT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.