Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Forward (+)

32536583 .. 32539657

Gene Structure 3075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00310520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTTGCGGTTGGGCACGGAGATGTCGGAGGAAAGGTTGTTTCCGACAATCTGTCGTAGGCCTAGTGCAAAGTGCACCGGCCAATCGGCACGCCTTCTGCACAAGGTCCGCGAGTGCCTTGGTTTTGGTTATAACGCGAGGGTTCCTCGTCCAACAGCGTCGTCAAAGCCGGAGAAATCACCGGATCTGATTTTGAAGGGTGCCCACGAGCTTTACCTTCACCGGGGTTGTGCGGAGGAATGTAAACCGAAAGAGGAGCTTCGCGCAGCACGGCGTGATTTGGCGGCCGAGACGGAGAAGAATAAAGCACTATGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

11.95

Weight (kDa)

9.32

Isoelectric Point (pI)

72.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	200
AccII	CGCG	3 cut(s)	111, 137, 264
AciI	CCGC	4 cut(s)	7, 109, 233, 284
AclWI	GGATC	1 cut(s)	192
AcoI	YGGCCR	2 cut(s)	79, 285
AdeI	CACNNNGTG	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	196
AhdI	GACNNNNNGTC	1 cut(s)	51
AluBI	AGCT	2 cut(s)	211, 259
AluI	AGCT	2 cut(s)	211, 259
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	284
Alw44I	GTGCAC	1 cut(s)	73
AlwI	GGATC	1 cut(s)	192
AoxI	GGCC	3 cut(s)	59, 79, 285
ApaLI	GTGCAC	1 cut(s)	73
ApeKI	GCWGC	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	2 cut(s)	171, 212
AvaII	GGWCC	1 cut(s)	106
BaeGI	GKGCMC	3 cut(s)	17, 77, 205
BanI	GGYRCC	1 cut(s)	200
BauI	CACGAG	1 cut(s)	206
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	278
BceAI	ACGGC	1 cut(s)	287
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	63
BisI	GCNGC	2 cut(s)	267, 285
BlsI	GCNGC	2 cut(s)	268, 286
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	1 cut(s)	106
BmeRI	GACNNNNNGTC	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	2 cut(s)	144, 202
BmrFI	CCNGG	1 cut(s)	224
BplI	GAGNNNNNCTC	2 cut(s)	130, 162
BpuMI	CCSGG	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	118, 223
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse118I	RCCGGY	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	118, 223
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	269
BseSI	GKGCMC	3 cut(s)	17, 77, 205
BseX3I	CGGCCG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	278
BsgI	GTGCAG	1 cut(s)	83
Bsh1236I	CGCG	3 cut(s)	111, 137, 264
Bsh1285I	CGRYCG	1 cut(s)	288
BshFI	GGCC	3 cut(s)	61, 81, 287
BshNI	GGYRCC	1 cut(s)	200
BsiEI	CGRYCG	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	4 cut(s)	78, 170, 182, 223
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	284
BsmBI	CGTCTC	1 cut(s)	284
BsnI	GGCC	3 cut(s)	61, 81, 287
Bsp1286I	GDGCHC	3 cut(s)	17, 77, 205
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	4 cut(s)	7, 109, 233, 284
BspANI	GGCC	3 cut(s)	61, 81, 287
BspFNI	CGCG	3 cut(s)	111, 137, 264
BspLI	GGNNCC	2 cut(s)	144, 202
BspPI	GGATC	1 cut(s)	192
BspT107I	GGYRCC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	77
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	118, 223
BssMI	GATC	1 cut(s)	184
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	91
BstFNI	CGCG	3 cut(s)	111, 137, 264
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	184
BstMCI	CGRYCG	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	222
BstSLI	GKGCMC	3 cut(s)	17, 77, 205
BstUI	CGCG	3 cut(s)	111, 137, 264
BstV1I	GCAGC	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
BstZI	CGGCCG	1 cut(s)	285
BsuRI	GGCC	3 cut(s)	61, 81, 287
Cac8I	GCNNGC	1 cut(s)	91
CfoI	GCGC	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	106
CseI	GACGC	1 cut(s)	147
CviJI	RGCY	6 cut(s)	61, 81, 169, 211, 259, 287
CviKI_1	RGCY	6 cut(s)	61, 81, 169, 211, 259, 287
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
DraIII	CACNNNGTG	1 cut(s)	275
DriI	GACNNNNNGTC	1 cut(s)	51
EaeI	YGGCCR	2 cut(s)	79, 285
EagI	CGGCCG	1 cut(s)	285
Eam1105I	GACNNNNNGTC	1 cut(s)	51
EclXI	CGGCCG	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	118
Eco147I	AGGCCT	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	106
Eco52I	CGGCCG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	118
Esp3I	CGTCTC	1 cut(s)	284
FaiI	YATR	2 cut(s)	132, 313
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
Fnu4HI	GCNGC	2 cut(s)	267, 285
Fsp4HI	GCNGC	2 cut(s)	267, 285
FspBI	CTAG	1 cut(s)	63
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	2 cut(s)	267, 285
HaeIII	GGCC	3 cut(s)	61, 81, 287
HapII	CCGG	4 cut(s)	78, 170, 182, 223
HgaI	GACGC	1 cut(s)	147
HhaI	GCGC	1 cut(s)	266
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HpaII	CCGG	4 cut(s)	78, 170, 182, 223
HphI	GGTGA	2 cut(s)	171, 212
Hpy166II	GTNNAC	2 cut(s)	75, 245
Hpy188I	TCNGA	3 cut(s)	28, 45, 189
Hpy8I	GTNNAC	2 cut(s)	75, 245
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	3 cut(s)	104, 190, 227
HpyCH4V	TGCA	3 cut(s)	68, 75, 100
HspAI	GCGC	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	4 cut(s)	91, 183, 195, 236
Lsp1109I	GCAGC	1 cut(s)	278
MaeI	CTAG	1 cut(s)	63
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	310
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	3 cut(s)	17, 77, 205
MmeI	TCCRAC	3 cut(s)	6, 68, 176
MnlI	CCTC	5 cut(s)	22, 132, 156, 229, 247
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	4 cut(s)	78, 170, 182, 223
MspR9I	CCNGG	1 cut(s)	224
MvnI	CGCG	3 cut(s)	111, 137, 264
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	1 cut(s)	184
NlaIV	GGNNCC	2 cut(s)	144, 202
NmeAIII	GCCGAG	1 cut(s)	313
PceI	AGGCCT	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	268, 286
PsiI	TTATAA	1 cut(s)	132
PspN4I	GGNNCC	2 cut(s)	144, 202
PspPI	GGNCC	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	20
SatI	GCNGC	2 cut(s)	267, 285
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	3 cut(s)	17, 77, 205
SetI	ASST	5 cut(s)	38, 108, 213, 219, 261
SinI	GGWCC	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	20
SseBI	AGGCCT	1 cut(s)	61
SsiI	CCGC	4 cut(s)	7, 109, 233, 284
SspMI	CTAG	1 cut(s)	63
StuI	AGGCCT	1 cut(s)	61
StyD4I	CCNGG	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	118
TauI	GCSGC	1 cut(s)	287
TseI	GCWGC	1 cut(s)	266
TspGWI	ACGGA	2 cut(s)	32, 308
VneI	GTGCAC	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	106
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.