Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8168368.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 670

Gene Structure 670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8168368.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 577 bp

ttcctcggccagaggagtcgtcaaagctagagaaatctctggatctgattttgaagggtgcccatgagctctaccttcaccagggttcggcggaggaacgtaaactgaaagaagaacttctgcaggcacagcgtgacttggcgtccgagagggagaagaataagtccactgctggggacattgccaagcttaacggtgctcttgtcgacgtcaaagagaagttcaagtgtgctgtggataagaccatcgctgataccgccactattgccaaccttaatgccgagctggcgtcagctaggcaggaagagatgaccaagctgatagaggacgagagggagatggtgcgcctggaggcggttgatgcttttaagaaatcaacagagttcaaggcacttccgaaggatgctggtaaacaaggtgtggccgccaactttaaagagctcaaagatagcagctacttgaattttgacaagatattagctgatcgagcttctccaaagtcgacacctggcaaggatgtcgcagttgaggatgttgcgggatctgaagatggtcgttcctcagaaaattgctcttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

21.04

Weight (kDa)

5.22

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	58
AccI	GTMKAC	2 cut(s)	206, 502
AciI	CCGC	5 cut(s)	91, 257, 355, 425, 538
AclWI	GGATC	2 cut(s)	50, 549
AcoI	YGGCCR	2 cut(s)	7, 422
AcsI	RAATTY	1 cut(s)	462
AcuI	CTGAAG	1 cut(s)	566
AcyI	GRCGYC	3 cut(s)	142, 209, 289
AdeI	CACNNNGTG	1 cut(s)	133
AfiI	CCNNNNNNNGG	4 cut(s)	81, 87, 173, 354
AgsI	TTSAA	4 cut(s)	54, 225, 387, 462
AhdI	GACNNNNNGTC	1 cut(s)	141
AjnI	CCWGG	3 cut(s)	80, 347, 507
Alw21I	GWGCWC	3 cut(s)	71, 201, 443
AlwI	GGATC	2 cut(s)	50, 549
AoxI	GGCC	2 cut(s)	7, 422
ApeKI	GCWGC	1 cut(s)	452
ApoI	RAATTY	1 cut(s)	462
Asp700I	GAANNNNTTC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	70
BaeGI	GKGCMC	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	58
BanII	GRGCYC	2 cut(s)	71, 443
Bbv12I	GWGCWC	3 cut(s)	71, 201, 443
BbvI	GCAGC	1 cut(s)	464
BccI	CCATC	3 cut(s)	253, 333, 544
BcgI	CGANNNNNNTGC	2 cut(s)	501, 535
BciT130I	CCWGG	3 cut(s)	82, 349, 509
BfaI	CTAG	2 cut(s)	28, 296
BfmI	CTRYAG	1 cut(s)	121
BglI	GCCNNNNNGGC	1 cut(s)	286
BisI	GCNGC	2 cut(s)	425, 453
BlsI	GCNGC	2 cut(s)	426, 454
Bme1390I	CCNGG	3 cut(s)	82, 349, 509
BmeRI	GACNNNNNGTC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	3 cut(s)	82, 349, 509
BmsI	GCATC	2 cut(s)	351, 393
BpmI	CTGGAG	1 cut(s)	370
BsaHI	GRCGYC	3 cut(s)	142, 209, 289
BsaJI	CCNNGG	2 cut(s)	4, 81
Bsc4I	CCNNNNNNNGG	4 cut(s)	81, 87, 173, 354
Bse3DI	GCAATG	1 cut(s)	179
BseBI	CCWGG	3 cut(s)	82, 349, 509
BseDI	CCNNGG	2 cut(s)	4, 81
BseGI	GGATG	3 cut(s)	408, 522, 537
BseLI	CCNNNNNNNGG	4 cut(s)	81, 87, 173, 354
BseMI	GCAATG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	575
BseRI	GAGGAG	1 cut(s)	28
BseSI	GKGCMC	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	464
BseYI	CCCAGC	1 cut(s)	172
BshFI	GGCC	2 cut(s)	9, 424
BshNI	GGYRCC	1 cut(s)	58
BsiHKAI	GWGCWC	3 cut(s)	71, 201, 443
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	4 cut(s)	81, 87, 173, 354
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	2 cut(s)	9, 424
Bsp1286I	GDGCHC	4 cut(s)	63, 71, 201, 443
Bsp143I	GATC	3 cut(s)	42, 483, 541
BspACI	CCGC	5 cut(s)	91, 257, 355, 425, 538
BspANI	GGCC	2 cut(s)	9, 424
BspCNI	CTCAG	1 cut(s)	574
BspLI	GGNNCC	1 cut(s)	60
BspMAI	CTGCAG	1 cut(s)	125
BspPI	GGATC	2 cut(s)	50, 549
BspT107I	GGYRCC	1 cut(s)	58
BsrDI	GCAATG	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	4, 81
BssMI	GATC	3 cut(s)	42, 483, 541
BssNI	GRCGYC	3 cut(s)	142, 209, 289
Bst2UI	CCWGG	3 cut(s)	82, 349, 509
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	299
BstACI	GRCGYC	3 cut(s)	142, 209, 289
BstC8I	GCNNGC	2 cut(s)	125, 287
BstDEI	CTNAG	1 cut(s)	561
BstENI	CCTNNNNNAGG	1 cut(s)	79
BstF5I	GGATG	3 cut(s)	408, 522, 537
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	3 cut(s)	45, 486, 544
BstMBI	GATC	3 cut(s)	42, 483, 541
BstMWI	GCNNNNNNNGC	6 cut(s)	129, 256, 265, 286, 361, 487
BstNI	CCWGG	3 cut(s)	82, 349, 509
BstSCI	CCNGG	3 cut(s)	80, 347, 507
BstSFI	CTRYAG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	464
BstX2I	RGATCY	2 cut(s)	42, 541
BstYI	RGATCY	2 cut(s)	42, 541
BsuRI	GGCC	2 cut(s)	9, 424
BtgZI	GCGATG	1 cut(s)	231
BtsCI	GGATG	3 cut(s)	408, 522, 537
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	2 cut(s)	125, 287
CfoI	GCGC	1 cut(s)	347
CseI	GACGC	2 cut(s)	131, 278
CviAII	CATG	1 cut(s)	64
DdeI	CTNAG	1 cut(s)	561
DpnI	GATC	3 cut(s)	44, 485, 543
DpnII	GATC	3 cut(s)	42, 483, 541
DraI	TTTAAA	1 cut(s)	435
DraIII	CACNNNGTG	1 cut(s)	133
DriI	GACNNNNNGTC	1 cut(s)	141
EaeI	YGGCCR	2 cut(s)	7, 422
Eam1104I	CTCTTC	1 cut(s)	299
Eam1105I	GACNNNNNGTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	299
EciI	GGCGGA	1 cut(s)	106
Ecl136II	GAGCTC	2 cut(s)	69, 441
Eco24I	GRGCYC	2 cut(s)	71, 443
Eco53kI	GAGCTC	2 cut(s)	69, 441
Eco57I	CTGAAG	1 cut(s)	566
EcoICRI	GAGCTC	2 cut(s)	69, 441
EcoNI	CCTNNNNNAGG	1 cut(s)	79
EcoRII	CCWGG	3 cut(s)	80, 347, 507
EcoT38I	GRGCYC	2 cut(s)	71, 443
FaeI	CATG	1 cut(s)	67
FaiI	YATR	1 cut(s)	65
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	1 cut(s)	63
FauI	CCCGC	1 cut(s)	531
FblI	GTMKAC	2 cut(s)	206, 502
Fnu4HI	GCNGC	2 cut(s)	425, 453
FokI	GGATG	3 cut(s)	415, 529, 544
FriOI	GRGCYC	2 cut(s)	71, 443
Fsp4HI	GCNGC	2 cut(s)	425, 453
FspBI	CTAG	2 cut(s)	28, 296
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	2 cut(s)	425, 453
GsaI	CCCAGC	1 cut(s)	176
GsuI	CTGGAG	1 cut(s)	370
HaeIII	GGCC	2 cut(s)	9, 424
HgaI	GACGC	2 cut(s)	131, 278
HhaI	GCGC	1 cut(s)	347
Hin1I	GRCGYC	3 cut(s)	142, 209, 289
Hin1II	CATG	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HincII	GTYRAC	2 cut(s)	207, 503
HindII	GTYRAC	2 cut(s)	207, 503
HindIII	AAGCTT	1 cut(s)	187
HinfI	GANTC	1 cut(s)	16
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	5 cut(s)	103, 167, 207, 412, 503
Hpy188I	TCNGA	5 cut(s)	47, 147, 398, 546, 564
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	5 cut(s)	103, 167, 207, 412, 503
Hpy99I	CGWCG	1 cut(s)	211
HpyAV	CCTTC	3 cut(s)	48, 85, 393
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	2 cut(s)	99, 209
HpyCH4V	TGCA	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	6 cut(s)	129, 256, 265, 286, 361, 487
HpyF3I	CTNAG	1 cut(s)	561
HpySE526I	ACGT	2 cut(s)	99, 209
Hsp92I	GRCGYC	3 cut(s)	142, 209, 289
Hsp92II	CATG	1 cut(s)	67
HspAI	GCGC	1 cut(s)	345
Kzo9I	GATC	3 cut(s)	42, 483, 541
Lsp1109I	GCAGC	1 cut(s)	464
LweI	GCATC	2 cut(s)	351, 393
MaeI	CTAG	2 cut(s)	28, 296
MaeII	ACGT	2 cut(s)	99, 209
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	3 cut(s)	44, 485, 543
MboI	GATC	3 cut(s)	42, 483, 541
MboII	GAAGA	5 cut(s)	124, 168, 316, 559, 566
MflI	RGATCY	2 cut(s)	42, 541
MhlI	GDGCHC	4 cut(s)	63, 71, 201, 443
MluCI	AATT	2 cut(s)	462, 567
MlyI	GAGTC	1 cut(s)	25
MnlI	CCTC	9 cut(s)	6, 14, 87, 143, 318, 326, 345, 522, 570
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	4 cut(s)	191, 275, 368, 434
MspR9I	CCNGG	3 cut(s)	82, 349, 509
MvaI	CCWGG	3 cut(s)	82, 349, 509
MwoI	GCNNNNNNNGC	6 cut(s)	129, 256, 265, 286, 361, 487
NdeII	GATC	3 cut(s)	42, 483, 541
NlaIII	CATG	1 cut(s)	67
NlaIV	GGNNCC	1 cut(s)	60
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	426, 454
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
Psp124BI	GAGCTC	2 cut(s)	71, 443
Psp6I	CCWGG	3 cut(s)	80, 347, 507
PspFI	CCCAGC	1 cut(s)	172
PspGI	CCWGG	3 cut(s)	80, 347, 507
PspN4I	GGNNCC	1 cut(s)	60
PstI	CTGCAG	1 cut(s)	125
PsuI	RGATCY	2 cut(s)	42, 541
SacI	GAGCTC	2 cut(s)	71, 443
SalI	GTCGAC	2 cut(s)	205, 501
SaqAI	TTAA	4 cut(s)	191, 275, 368, 434
SatI	GCNGC	2 cut(s)	425, 453
Sau3AI	GATC	3 cut(s)	42, 483, 541
SchI	GAGTC	1 cut(s)	25
ScrFI	CCNGG	3 cut(s)	82, 349, 509
SduI	GDGCHC	4 cut(s)	63, 71, 201, 443
SfaNI	GCATC	2 cut(s)	351, 393
SfcI	CTRYAG	1 cut(s)	121
Sse9I	AATT	2 cut(s)	462, 567
SsiI	CCGC	5 cut(s)	91, 257, 355, 425, 538
SspMI	CTAG	2 cut(s)	28, 296
SstI	GAGCTC	2 cut(s)	71, 443
StyD4I	CCNGG	3 cut(s)	80, 347, 507
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	2 cut(s)	102, 212
TaqI	TCGA	3 cut(s)	206, 486, 502
TasI	AATT	2 cut(s)	462, 567
TauI	GCSGC	1 cut(s)	427
Tru1I	TTAA	4 cut(s)	191, 275, 368, 434
Tru9I	TTAA	4 cut(s)	191, 275, 368, 434
TscAI	CASTG	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	133
TspRI	CASTG	1 cut(s)	174
XagI	CCTNNNNNAGG	1 cut(s)	79
XapI	RAATTY	1 cut(s)	462
XmiI	GTMKAC	2 cut(s)	206, 502
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	2 cut(s)	28, 296
ZraI	GACGTC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.