Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003629.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Reverse (-)

233679 .. 235078

Gene Structure 1400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003629.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgctcaaggagtgcgagtggcttggatttggtggtgaggctagattggctcaacctacggcatcctcgagagagaaaagcagggtcaccgcgagagatatggccaagcttgatgctgcccaattgcagcaggcgcttacagccaaagagaaagagttggcgaactttcagtctgctaggcaggaagatatggcgaagctggaggaggatgataaggagatggtgcgcttagaggcagttgatgcttttaagaagtcggcagattttaagacacttctgacaaatgctggtaaacaaggtgctaccgccaactttaaggagctcaaagatagcggctatttgaactttgacaagataatagctgatcgagccccatcacaacccacgcctagaaaggatgttgagggatctttagatgacggttcctcatattgcggctcttctgatggtagcgcgaatagtggttattctggagaagatgtgaggtctgatgttaatcctgagactccgacaccgacaagtaaaggcgagaagaaaaaaatgggtactcgtcagcctgtggaaaaacgccgtcgtgatgattgtatttcggggtcctcccccacgctgggcaatactaggatagtagtagcagagatgttgagtgttccacgggtgagtggatgtgacgccttccttgcttttcaaatagaatgtgtcgaggctcgctacttctacaatttgataaggtccttcccaagttgggcgaagtgcttttggtggtggtatgacttctttcatgacccagtcgccaaattgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

29.63

Weight (kDa)

5.73

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	92, 455
AciI	CCGC	4 cut(s)	90, 306, 333, 435
AclWI	GGATC	1 cut(s)	415
AcoI	YGGCCR	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	669
AfaI	GTAC	1 cut(s)	547
AfiI	CCNNNNNNNGG	3 cut(s)	607, 608, 742
AgsI	TTSAA	2 cut(s)	343, 686
AluBI	AGCT	4 cut(s)	109, 199, 322, 362
AluI	AGCT	4 cut(s)	109, 199, 322, 362
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	497
AlwI	GGATC	1 cut(s)	415
Ama87I	CYCGRG	1 cut(s)	67
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	116, 127
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AspLEI	GCGC	3 cut(s)	136, 228, 455
AspS9I	GGNCC	2 cut(s)	594, 729
AsuHPI	GGTGA	3 cut(s)	47, 79, 667
AvaI	CYCGRG	1 cut(s)	67
AvaII	GGWCC	2 cut(s)	594, 729
BalI	TGGCCA	1 cut(s)	104
BanII	GRGCYC	2 cut(s)	324, 373
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	103, 139
BccI	CCATC	3 cut(s)	214, 382, 440
BceAI	ACGGC	2 cut(s)	75, 555
BcoDI	GTCTC	1 cut(s)	497
BfaI	CTAG	4 cut(s)	42, 177, 390, 618
BfoI	RGCGCY	1 cut(s)	137
BisI	GCNGC	4 cut(s)	117, 128, 334, 436
BlsI	GCNGC	4 cut(s)	118, 129, 335, 437
Bme18I	GGWCC	2 cut(s)	594, 729
BmeT110I	CYCGRG	1 cut(s)	67
BmgT120I	GGNCC	2 cut(s)	594, 729
BmiI	GGNNCC	2 cut(s)	424, 595
BmrI	ACTGGG	1 cut(s)	779
BmsI	GCATC	3 cut(s)	71, 103, 232
BmuI	ACTGGG	1 cut(s)	779
BpmI	CTGGAG	2 cut(s)	221, 492
BsaBI	GATNNNNATC	1 cut(s)	495
BsaHI	GRCGYC	1 cut(s)	669
BsaJI	CCNNGG	1 cut(s)	650
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 465, 495
Bsc4I	CCNNNNNNNGG	3 cut(s)	607, 608, 742
Bse1I	ACTGG	1 cut(s)	785
Bse8I	GATNNNNATC	1 cut(s)	495
BseDI	CCNNGG	1 cut(s)	650
BseGI	GGATG	4 cut(s)	62, 214, 403, 668
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	3 cut(s)	607, 608, 742
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	1 cut(s)	785
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	2 cut(s)	103, 139
BseYI	CCCAGC	1 cut(s)	607
Bsh1236I	CGCG	2 cut(s)	92, 455
BshFI	GGCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	67
BslI	CCNNNNNNNGG	3 cut(s)	607, 608, 742
BsmAI	GTCTC	1 cut(s)	497
BsnI	GGCC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	324, 373
Bsp143I	GATC	2 cut(s)	364, 407
BspACI	CCGC	4 cut(s)	90, 306, 333, 435
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	493
BspFNI	CGCG	2 cut(s)	92, 455
BspHI	TCATGA	1 cut(s)	778
BspLI	GGNNCC	2 cut(s)	424, 595
BspPI	GGATC	1 cut(s)	415
BspQI	GCTCTTC	1 cut(s)	445
BsrI	ACTGG	1 cut(s)	785
BssECI	CCNNGG	1 cut(s)	650
BssMI	GATC	2 cut(s)	364, 407
BssNI	GRCGYC	1 cut(s)	669
Bst4CI	ACNGT	1 cut(s)	422
Bst6I	CTCTTC	1 cut(s)	445
BstACI	GRCGYC	1 cut(s)	669
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	132, 706
BstDEI	CTNAG	2 cut(s)	229, 501
BstDSI	CCRYGG	1 cut(s)	650
BstEII	GGTNACC	1 cut(s)	85
BstF5I	GGATG	4 cut(s)	62, 214, 403, 668
BstFNI	CGCG	2 cut(s)	92, 455
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	3 cut(s)	136, 228, 455
BstKTI	GATC	2 cut(s)	367, 410
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	2 cut(s)	364, 407
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 133, 140, 242, 368, 677
BstPI	GGTNACC	1 cut(s)	85
BstUI	CGCG	2 cut(s)	92, 455
BstV1I	GCAGC	2 cut(s)	103, 139
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	104
BtgI	CCRYGG	1 cut(s)	650
BtsCI	GGATG	4 cut(s)	62, 214, 403, 668
Cac8I	GCNNGC	2 cut(s)	132, 706
CciI	TCATGA	1 cut(s)	778
CfoI	GCGC	3 cut(s)	136, 228, 455
Cfr13I	GGNCC	2 cut(s)	594, 729
CseI	GACGC	1 cut(s)	677
Csp6I	GTAC	1 cut(s)	546
CviAII	CATG	1 cut(s)	779
CviQI	GTAC	1 cut(s)	546
DdeI	CTNAG	2 cut(s)	229, 501
DpnI	GATC	2 cut(s)	366, 409
DpnII	GATC	2 cut(s)	364, 407
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	445
EarI	CTCTTC	1 cut(s)	445
Ecl136II	GAGCTC	1 cut(s)	322
Eco24I	GRGCYC	2 cut(s)	324, 373
Eco47I	GGWCC	2 cut(s)	594, 729
Eco53kI	GAGCTC	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	67
Eco91I	GGTNACC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	322
EcoO109I	RGGNCCY	2 cut(s)	594, 729
EcoO65I	GGTNACC	1 cut(s)	85
EcoT38I	GRGCYC	2 cut(s)	324, 373
FaeI	CATG	1 cut(s)	782
FaiI	YATR	5 cut(s)	101, 191, 430, 768, 780
FatI	CATG	1 cut(s)	778
Fnu4HI	GCNGC	4 cut(s)	117, 128, 334, 436
FokI	GGATG	4 cut(s)	49, 221, 410, 675
FriOI	GRGCYC	2 cut(s)	324, 373
Fsp4HI	GCNGC	4 cut(s)	117, 128, 334, 436
FspBI	CTAG	4 cut(s)	42, 177, 390, 618
GlaI	GCGC	3 cut(s)	135, 227, 454
GluI	GCNGC	4 cut(s)	117, 128, 334, 436
GsaI	CCCAGC	1 cut(s)	611
GsuI	CTGGAG	2 cut(s)	221, 492
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	104
HgaI	GACGC	1 cut(s)	677
HhaI	GCGC	3 cut(s)	136, 228, 455
Hin1I	GRCGYC	1 cut(s)	669
Hin1II	CATG	1 cut(s)	782
Hin6I	GCGC	3 cut(s)	134, 226, 453
HinP1I	GCGC	3 cut(s)	134, 226, 453
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	505
HphI	GGTGA	3 cut(s)	47, 79, 667
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	4 cut(s)	279, 445, 490, 510
Hpy188III	TCNNGA	5 cut(s)	69, 471, 500, 575, 779
Hpy8I	GTNNAC	1 cut(s)	293
Hpy99I	CGWCG	1 cut(s)	576
HpyAV	CCTTC	2 cut(s)	682, 742
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4V	TGCA	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 133, 140, 242, 368, 677
HpyF3I	CTNAG	2 cut(s)	229, 501
Hsp92I	GRCGYC	1 cut(s)	669
Hsp92II	CATG	1 cut(s)	782
HspAI	GCGC	3 cut(s)	134, 226, 453
Kzo9I	GATC	2 cut(s)	364, 407
LguI	GCTCTTC	1 cut(s)	445
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	9 cut(s)	67, 116, 167, 185, 273, 456, 513, 570, 593
Lsp1109I	GCAGC	2 cut(s)	103, 139
LweI	GCATC	3 cut(s)	71, 103, 232
MaeI	CTAG	4 cut(s)	42, 177, 390, 618
MaeIII	GTNAC	2 cut(s)	85, 665
MalI	GATC	2 cut(s)	366, 409
MboI	GATC	2 cut(s)	364, 407
MboII	GAAGA	4 cut(s)	197, 432, 488, 544
MfeI	CAATTG	1 cut(s)	122
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	2 cut(s)	324, 373
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	3 cut(s)	122, 718, 794
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	499
MmeI	TCCRAC	1 cut(s)	533
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	4 cut(s)	249, 267, 315, 495
Msp20I	TGGCCA	1 cut(s)	104
MunI	CAATTG	1 cut(s)	122
MvnI	CGCG	2 cut(s)	92, 455
MwoI	GCNNNNNNNGC	6 cut(s)	47, 133, 140, 242, 368, 677
NdeII	GATC	2 cut(s)	364, 407
NlaIII	CATG	1 cut(s)	782
NlaIV	GGNNCC	2 cut(s)	424, 595
NmuCI	GTSAC	2 cut(s)	85, 665
PaeR7I	CTCGAG	1 cut(s)	67
PagI	TCATGA	1 cut(s)	778
PciSI	GCTCTTC	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PflFI	GACNNNGTC	1 cut(s)	785
PkrI	GCNGC	4 cut(s)	118, 129, 335, 437
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
PpuMI	RGGWCCY	2 cut(s)	594, 729
Psp124BI	GAGCTC	1 cut(s)	324
Psp5II	RGGWCCY	2 cut(s)	594, 729
PspEI	GGTNACC	1 cut(s)	85
PspFI	CCCAGC	1 cut(s)	607
PspN4I	GGNNCC	2 cut(s)	424, 595
PspPI	GGNCC	2 cut(s)	594, 729
PspPPI	RGGWCCY	2 cut(s)	594, 729
PsuI	RGATCY	1 cut(s)	407
PsyI	GACNNNGTC	1 cut(s)	785
RsaI	GTAC	1 cut(s)	547
RsaNI	GTAC	1 cut(s)	546
SacI	GAGCTC	1 cut(s)	324
SapI	GCTCTTC	1 cut(s)	445
SaqAI	TTAA	4 cut(s)	249, 267, 315, 495
SatI	GCNGC	4 cut(s)	117, 128, 334, 436
Sau3AI	GATC	2 cut(s)	364, 407
Sau96I	GGNCC	2 cut(s)	594, 729
SchI	GAGTC	1 cut(s)	499
SduI	GDGCHC	2 cut(s)	324, 373
SetI	ASST	8 cut(s)	58, 111, 201, 301, 324, 364, 488, 731
SfaNI	GCATC	3 cut(s)	71, 103, 232
Sfr274I	CTCGAG	1 cut(s)	67
SinI	GGWCC	2 cut(s)	594, 729
SlaI	CTCGAG	1 cut(s)	67
SmlI	CTYRAG	2 cut(s)	5, 67
SmoI	CTYRAG	2 cut(s)	5, 67
Sse9I	AATT	3 cut(s)	122, 718, 794
SsiI	CCGC	4 cut(s)	90, 306, 333, 435
SspMI	CTAG	4 cut(s)	42, 177, 390, 618
SstI	GAGCTC	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	422
TaqI	TCGA	3 cut(s)	68, 367, 699
TasI	AATT	3 cut(s)	122, 718, 794
TauI	GCSGC	2 cut(s)	336, 438
Tru1I	TTAA	4 cut(s)	249, 267, 315, 495
Tru9I	TTAA	4 cut(s)	249, 267, 315, 495
TseFI	GTSAC	2 cut(s)	85, 665
TseI	GCWGC	2 cut(s)	116, 127
Tsp45I	GTSAC	2 cut(s)	85, 665
TspDTI	ATGAA	1 cut(s)	767
Tth111I	GACNNNGTC	1 cut(s)	785
VpaK11BI	GGWCC	2 cut(s)	594, 729
XhoI	CTCGAG	1 cut(s)	67
XspI	CTAG	4 cut(s)	42, 177, 390, 618

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.