Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006215.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Forward (+)

38710 .. 39237

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006215.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ctgaagaaggagaaagctgagagagaagatactatcgcccagttgcaagaggctcttaccgccaaagagaaagagttggcggattttttgtcgactaggcaggacgagataactaaactggcggaggatgaaaaagagatggtgtgtctagaggcgattgatgctttcaagaattcagcagagttcaaggcactcctaacggatgctggtaaacaaggtgcggccgccaactttaaggaactcaaagatagcggctatttgaattttgataagattttagccgatcgagtcgtcgttgaagatgctgcggaatctgaagatggtggctcctcagaaagtggctcatctaatggtagtgaagaaaatggttcgtctggagaagatggcacgaggtctgatggcaatcctgagattccgacgccgacaagtaaagctgctaagaaaaagatggcttctcgttcacctgtggggaaacgtcgtcgtggtgattgtgccttggggtccgcctcccaggccggtcaaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

18.59

Weight (kDa)

4.78

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	92
AciI	CCGC	8 cut(s)	60, 80, 122, 221, 225, 252, 308, 504
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	2 cut(s)	172, 262
AcuI	CTGAAG	2 cut(s)	23, 336
AcyI	GRCGYC	1 cut(s)	419
AgsI	TTSAA	4 cut(s)	169, 187, 262, 299
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	2 cut(s)	17, 434
AluI	AGCT	2 cut(s)	17, 434
AoxI	GGCC	2 cut(s)	222, 513
ApeKI	GCWGC	2 cut(s)	305, 434
ApoI	RAATTY	2 cut(s)	172, 262
AspS9I	GGNCC	1 cut(s)	501
AsuHPI	GGTGA	2 cut(s)	453, 497
AvaII	GGWCC	1 cut(s)	501
BauI	CACGAG	1 cut(s)	388
BbvI	GCAGC	2 cut(s)	292, 421
BccI	CCATC	5 cut(s)	133, 314, 377, 392, 442
BciT130I	CCWGG	1 cut(s)	512
BfaI	CTAG	2 cut(s)	96, 149
BglI	GCCNNNNNGGC	1 cut(s)	512
BisI	GCNGC	5 cut(s)	222, 225, 253, 306, 435
BlsI	GCNGC	5 cut(s)	223, 226, 254, 307, 436
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	1 cut(s)	501
BmgT120I	GGNCC	1 cut(s)	501
BmiI	GGNNCC	2 cut(s)	328, 502
BmrFI	CCNGG	1 cut(s)	512
BmrI	ACTGGG	1 cut(s)	34
BmsI	GCATC	3 cut(s)	151, 193, 292
BmuI	ACTGGG	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	396
BsaBI	GATNNNNATC	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	495, 510
Bse118I	RCCGGY	1 cut(s)	515
Bse1I	ACTGG	2 cut(s)	40, 123
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	2 cut(s)	495, 510
BseGI	GGATG	2 cut(s)	133, 208
BseJI	GATNNNNATC	1 cut(s)	402
BseMII	CTCAG	3 cut(s)	9, 345, 399
BseNI	ACTGG	2 cut(s)	40, 123
BseRI	GAGGAG	1 cut(s)	319
BseX3I	CGGCCG	1 cut(s)	222
BseXI	GCAGC	2 cut(s)	292, 421
Bsh1285I	CGRYCG	2 cut(s)	225, 286
BshFI	GGCC	2 cut(s)	224, 515
BsiEI	CGRYCG	2 cut(s)	225, 286
BsiSI	CCGG	1 cut(s)	516
BsnI	GGCC	2 cut(s)	224, 515
Bsp143I	GATC	1 cut(s)	283
BspACI	CCGC	8 cut(s)	60, 80, 122, 221, 225, 252, 308, 504
BspANI	GGCC	2 cut(s)	224, 515
BspCNI	CTCAG	3 cut(s)	10, 344, 400
BspLI	GGNNCC	2 cut(s)	328, 502
BsrFI	RCCGGY	1 cut(s)	515
BsrI	ACTGG	2 cut(s)	40, 123
BssAI	RCCGGY	1 cut(s)	515
BssECI	CCNNGG	2 cut(s)	495, 510
BssMI	GATC	1 cut(s)	283
BssNI	GRCGYC	1 cut(s)	419
BssSI	CACGAG	1 cut(s)	388
BssT1I	CCWWGG	1 cut(s)	495
Bst2BI	CACGAG	1 cut(s)	388
Bst2UI	CCWGG	1 cut(s)	512
BstACI	GRCGYC	1 cut(s)	419
BstDEI	CTNAG	4 cut(s)	18, 331, 408, 438
BstF5I	GGATG	2 cut(s)	133, 208
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstMCI	CGRYCG	2 cut(s)	225, 286
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 161, 512
BstNI	CCWGG	1 cut(s)	512
BstSCI	CCNGG	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	292, 421
BstZI	CGGCCG	1 cut(s)	222
BsuRI	GGCC	2 cut(s)	224, 515
BtsCI	GGATG	2 cut(s)	133, 208
CciNI	GCGGCCGC	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	515
Cfr13I	GGNCC	1 cut(s)	501
CseI	GACGC	1 cut(s)	427
DdeI	CTNAG	4 cut(s)	18, 331, 408, 438
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	222
EagI	CGGCCG	1 cut(s)	222
EciI	GGCGGA	3 cut(s)	95, 137, 493
EclXI	CGGCCG	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	495
Eco47I	GGWCC	1 cut(s)	501
Eco52I	CGGCCG	1 cut(s)	222
Eco57I	CTGAAG	2 cut(s)	23, 336
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	510
EcoT14I	CCWWGG	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	495
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	5 cut(s)	222, 225, 253, 306, 435
FokI	GGATG	2 cut(s)	140, 215
Fsp4HI	GCNGC	5 cut(s)	222, 225, 253, 306, 435
FspBI	CTAG	2 cut(s)	96, 149
GluI	GCNGC	5 cut(s)	222, 225, 253, 306, 435
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	2 cut(s)	224, 515
HapII	CCGG	1 cut(s)	516
HgaI	GACGC	1 cut(s)	427
Hin1I	GRCGYC	1 cut(s)	419
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HinfI	GANTC	3 cut(s)	288, 311, 412
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	2 cut(s)	453, 497
Hpy166II	GTNNAC	3 cut(s)	93, 212, 461
Hpy188I	TCNGA	4 cut(s)	316, 334, 397, 417
Hpy188III	TCNNGA	4 cut(s)	149, 169, 375, 407
Hpy8I	GTNNAC	3 cut(s)	93, 212, 461
Hpy99I	CGWCG	4 cut(s)	296, 421, 480, 483
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 161, 512
HpyF3I	CTNAG	4 cut(s)	18, 331, 408, 438
HpySE526I	ACGT	1 cut(s)	475
Hsp92I	GRCGYC	1 cut(s)	419
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	1 cut(s)	332
LpnPI	CCDG	9 cut(s)	53, 86, 104, 192, 360, 420, 477, 497, 524
Lsp1109I	GCAGC	2 cut(s)	292, 421
LweI	GCATC	3 cut(s)	151, 193, 292
MaeI	CTAG	2 cut(s)	96, 149
MaeII	ACGT	1 cut(s)	475
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	6 cut(s)	16, 38, 311, 329, 371, 392
MluCI	AATT	2 cut(s)	172, 262
MlyI	GAGTC	1 cut(s)	297
MmeI	TCCRAC	1 cut(s)	440
MnlI	CCTC	6 cut(s)	43, 118, 145, 340, 384, 517
MseI	TTAA	2 cut(s)	234, 526
MspI	CCGG	1 cut(s)	516
MspR9I	CCNGG	1 cut(s)	512
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	3 cut(s)	59, 161, 512
NdeII	GATC	1 cut(s)	283
NlaIV	GGNNCC	2 cut(s)	328, 502
NotI	GCGGCCGC	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	311, 412
PkrI	GCNGC	5 cut(s)	223, 226, 254, 307, 436
Ple19I	CGATCG	1 cut(s)	286
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	2 cut(s)	328, 502
PspPI	GGNCC	1 cut(s)	501
PvuI	CGATCG	1 cut(s)	286
SalI	GTCGAC	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	234, 526
SatI	GCNGC	5 cut(s)	222, 225, 253, 306, 435
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	1 cut(s)	501
SchI	GAGTC	1 cut(s)	297
ScrFI	CCNGG	1 cut(s)	512
SetI	ASST	6 cut(s)	19, 220, 395, 436, 466, 478
SfaNI	GCATC	3 cut(s)	151, 193, 292
SinI	GGWCC	1 cut(s)	501
Sse9I	AATT	2 cut(s)	172, 262
SsiI	CCGC	8 cut(s)	60, 80, 122, 221, 225, 252, 308, 504
SspMI	CTAG	2 cut(s)	96, 149
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	1 cut(s)	495
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	2 cut(s)	92, 286
TasI	AATT	2 cut(s)	172, 262
TauI	GCSGC	3 cut(s)	224, 227, 255
TfiI	GAWTC	2 cut(s)	311, 412
Tru1I	TTAA	2 cut(s)	234, 526
Tru9I	TTAA	2 cut(s)	234, 526
TseI	GCWGC	2 cut(s)	305, 434
TspDTI	ATGAA	1 cut(s)	144
TspGWI	ACGGA	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	501
XapI	RAATTY	2 cut(s)	172, 262
XbaI	TCTAGA	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	92
XspI	CTAG	2 cut(s)	96, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.