Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003141.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Reverse (-)

15466 .. 16305

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003141.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgaaggttggagataaggatgtggcggaaaagagtgttgccgttggccataaggatgtcgggggaagaaggtttgtctcctacaatcctgtcattgggttggtacaaagtgcacctgctaatcaacaagcctttctgcacaaggtctgtgagcgccttggctttagtagcgaggcgagagtttctcggccagcggagtggtcaaagttggagacgtccctggatctgattttgaaggagaaggagaaaaacaaatccaccactgggggcattgtcaagcttgacggtgcccttcttgacgtaaaagagaaattcaagcgtgtagtggataaaaccatcaccgatactgccaccattgctaaccaaaatgccgagttggcggccctgaagaaagagaaggctgagagagaagatatcatcactaagctgcaagaggcgcttaccgccaaagagaaagagttagcggacttccaatttgctaagcaggaagagatggctaagctggcggaggacgagaaggagatggtgcgcttagaggcagttgatgcttttaagaaatcgacagagttcaaggcatttttgactgatgctggtaaaccaggtgttgccgccaactttaacgaactcaaagatagcggctatttgaactttgacaagataatggctgatcgagccccttcacagtccacgcctggcgaggatgtcgcagtgggggatgttgagggatctgaagatggttgttcctcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

27.2

Weight (kDa)

5.29

Isoelectric Point (pI)

27.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	124
AatII	GACGTC	1 cut(s)	218
Acc36I	ACCTGC	1 cut(s)	124
AccB1I	GGYRCC	1 cut(s)	287
AciI	CCGC	8 cut(s)	26, 194, 380, 444, 464, 506, 609, 636
AclWI	GGATC	2 cut(s)	231, 733
AcoI	YGGCCR	2 cut(s)	46, 188
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	2 cut(s)	407, 750
AcyI	GRCGYC	1 cut(s)	215
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	2 cut(s)	95, 264
AgsI	TTSAA	4 cut(s)	235, 316, 571, 646
AjnI	CCWGG	3 cut(s)	219, 598, 691
AluBI	AGCT	3 cut(s)	280, 427, 502
AluI	AGCT	3 cut(s)	280, 427, 502
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	2 cut(s)	82, 206
Alw44I	GTGCAC	1 cut(s)	111
AlwI	GGATC	2 cut(s)	231, 733
AoxI	GGCC	3 cut(s)	46, 188, 381
ApaLI	GTGCAC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	427
ApoI	RAATTY	1 cut(s)	311
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
AspLEI	GCGC	3 cut(s)	156, 439, 531
AspS9I	GGNCC	1 cut(s)	382
AsuHPI	GGTGA	1 cut(s)	331
BaeGI	GKGCMC	2 cut(s)	115, 292
BalI	TGGCCA	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	676
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	4 cut(s)	344, 487, 517, 728
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	3 cut(s)	221, 600, 693
BcoDI	GTCTC	2 cut(s)	82, 206
BfoI	RGCGCY	2 cut(s)	157, 440
BfuAI	ACCTGC	1 cut(s)	124
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	4 cut(s)	381, 428, 609, 637
BlpI	GCTNAGC	2 cut(s)	480, 498
BlsI	GCNGC	4 cut(s)	382, 429, 610, 638
Bme1390I	CCNGG	3 cut(s)	221, 600, 693
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	3 cut(s)	221, 600, 693
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	2 cut(s)	535, 577
BmuI	ACTGGG	1 cut(s)	273
BplI	GAGNNNNNCTC	2 cut(s)	169, 201
Bpu1102I	GCTNAGC	2 cut(s)	480, 498
BsaHI	GRCGYC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	157, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 264
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	3 cut(s)	221, 600, 693
BseDI	CCNNGG	2 cut(s)	157, 219
BseGI	GGATG	4 cut(s)	25, 61, 706, 721
BseLI	CCNNNNNNNGG	2 cut(s)	95, 264
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	268
BseSI	GKGCMC	2 cut(s)	115, 292
BseXI	GCAGC	1 cut(s)	414
BsgI	GTGCAG	1 cut(s)	122
BshFI	GGCC	3 cut(s)	48, 190, 383
BshNI	GGYRCC	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	115
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	2 cut(s)	95, 264
BsmAI	GTCTC	2 cut(s)	82, 206
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	3 cut(s)	48, 190, 383
Bsp1286I	GDGCHC	3 cut(s)	115, 292, 676
Bsp143I	GATC	3 cut(s)	223, 667, 725
Bsp1720I	GCTNAGC	2 cut(s)	480, 498
BspACI	CCGC	8 cut(s)	26, 194, 380, 444, 464, 506, 609, 636
BspANI	GGCC	3 cut(s)	48, 190, 383
BspCNI	CTCAG	1 cut(s)	394
BspLI	GGNNCC	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	2 cut(s)	231, 733
BspT107I	GGYRCC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	157, 219
BssMI	GATC	3 cut(s)	223, 667, 725
BssNI	GRCGYC	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	3 cut(s)	221, 600, 693
Bst4CI	ACNGT	2 cut(s)	287, 684
Bst6I	CTCTTC	1 cut(s)	483
BstACI	GRCGYC	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	192, 504
BstDEI	CTNAG	5 cut(s)	402, 423, 480, 498, 532
BstF5I	GGATG	4 cut(s)	25, 61, 706, 721
BstH2I	RGCGCY	2 cut(s)	157, 440
BstHHI	GCGC	3 cut(s)	156, 439, 531
BstKTI	GATC	3 cut(s)	226, 670, 728
BstMAI	GTCTC	2 cut(s)	82, 206
BstMBI	GATC	3 cut(s)	223, 667, 725
BstMWI	GCNNNNNNNGC	8 cut(s)	168, 356, 377, 436, 443, 503, 545, 671
BstNI	CCWGG	3 cut(s)	221, 600, 693
BstSCI	CCNGG	3 cut(s)	219, 598, 691
BstSLI	GKGCMC	2 cut(s)	115, 292
BstV1I	GCAGC	1 cut(s)	414
BstX2I	RGATCY	2 cut(s)	223, 725
BstXI	CCANNNNNNTGG	1 cut(s)	198
BstYI	RGATCY	2 cut(s)	223, 725
BsuRI	GGCC	3 cut(s)	48, 190, 383
BtsCI	GGATG	4 cut(s)	25, 61, 706, 721
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	2 cut(s)	261, 714
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	2 cut(s)	192, 504
CfoI	GCGC	3 cut(s)	156, 439, 531
Cfr13I	GGNCC	1 cut(s)	382
CsiI	ACCWGGT	1 cut(s)	598
Csp6I	GTAC	1 cut(s)	104
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	5 cut(s)	402, 423, 480, 498, 532
DpnI	GATC	3 cut(s)	225, 669, 727
DpnII	GATC	3 cut(s)	223, 667, 725
EaeI	YGGCCR	2 cut(s)	46, 188
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
EciI	GGCGGA	2 cut(s)	41, 521
Eco130I	CCWWGG	1 cut(s)	157
Eco24I	GRGCYC	1 cut(s)	676
Eco32I	GATATC	1 cut(s)	415
Eco57I	CTGAAG	2 cut(s)	407, 750
EcoRII	CCWGG	3 cut(s)	219, 598, 691
EcoRV	GATATC	1 cut(s)	415
EcoT14I	CCWWGG	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	676
ErhI	CCWWGG	1 cut(s)	157
Esp3I	CGTCTC	1 cut(s)	206
FaiI	YATR	2 cut(s)	51, 748
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	1 cut(s)	202
Fnu4HI	GCNGC	4 cut(s)	381, 428, 609, 637
FokI	GGATG	4 cut(s)	32, 68, 713, 728
FriOI	GRGCYC	1 cut(s)	676
Fsp4HI	GCNGC	4 cut(s)	381, 428, 609, 637
GlaI	GCGC	3 cut(s)	155, 438, 530
GluI	GCNGC	4 cut(s)	381, 428, 609, 637
HaeII	RGCGCY	2 cut(s)	157, 440
HaeIII	GGCC	3 cut(s)	48, 190, 383
HhaI	GCGC	3 cut(s)	156, 439, 531
Hin1I	GRCGYC	1 cut(s)	215
Hin6I	GCGC	3 cut(s)	154, 437, 529
HinP1I	GCGC	3 cut(s)	154, 437, 529
HindIII	AAGCTT	1 cut(s)	278
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	3 cut(s)	113, 596, 687
Hpy188I	TCNGA	2 cut(s)	228, 730
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	3 cut(s)	113, 596, 687
HpyAV	CCTTC	7 cut(s)	63, 229, 235, 302, 391, 511, 687
HpyCH4III	ACNGT	2 cut(s)	287, 684
HpyCH4IV	ACGT	2 cut(s)	215, 300
HpyCH4V	TGCA	3 cut(s)	113, 139, 430
HpyF10VI	GCNNNNNNNGC	8 cut(s)	168, 356, 377, 436, 443, 503, 545, 671
HpyF3I	CTNAG	5 cut(s)	402, 423, 480, 498, 532
HpySE526I	ACGT	2 cut(s)	215, 300
Hsp92I	GRCGYC	1 cut(s)	215
HspAI	GCGC	3 cut(s)	154, 437, 529
Kzo9I	GATC	3 cut(s)	223, 667, 725
Lsp1109I	GCAGC	1 cut(s)	414
LweI	GCATC	2 cut(s)	535, 577
MabI	ACCWGGT	1 cut(s)	598
MaeII	ACGT	2 cut(s)	215, 300
MalI	GATC	3 cut(s)	225, 669, 727
MboI	GATC	3 cut(s)	223, 667, 725
MboII	GAAGA	5 cut(s)	78, 400, 422, 500, 743
MflI	RGATCY	2 cut(s)	223, 725
MhlI	GDGCHC	3 cut(s)	115, 292, 676
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	2 cut(s)	311, 473
MluNI	TGGCCA	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	6 cut(s)	166, 427, 502, 529, 691, 715
Mox20I	TGGCCA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	2 cut(s)	552, 618
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	194
MspR9I	CCNGG	3 cut(s)	221, 600, 693
MvaI	CCWGG	3 cut(s)	221, 600, 693
MwoI	GCNNNNNNNGC	8 cut(s)	168, 356, 377, 436, 443, 503, 545, 671
NdeII	GATC	3 cut(s)	223, 667, 725
NlaIV	GGNNCC	1 cut(s)	289
NmeAIII	GCCGAG	2 cut(s)	166, 397
PaqCI	CACCTGC	1 cut(s)	124
PkrI	GCNGC	4 cut(s)	382, 429, 610, 638
Psp6I	CCWGG	3 cut(s)	219, 598, 691
PspGI	CCWGG	3 cut(s)	219, 598, 691
PspN4I	GGNNCC	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	382
PsuI	RGATCY	2 cut(s)	223, 725
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	552, 618
SatI	GCNGC	4 cut(s)	381, 428, 609, 637
Sau3AI	GATC	3 cut(s)	223, 667, 725
Sau96I	GGNCC	1 cut(s)	382
ScrFI	CCNGG	3 cut(s)	221, 600, 693
SduI	GDGCHC	3 cut(s)	115, 292, 676
SexAI	ACCWGGT	1 cut(s)	598
SfaNI	GCATC	2 cut(s)	535, 577
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	2 cut(s)	311, 473
SsiI	CCGC	8 cut(s)	26, 194, 380, 444, 464, 506, 609, 636
StyD4I	CCNGG	3 cut(s)	219, 598, 691
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	287, 684
TaiI	ACGT	2 cut(s)	218, 303
TaqI	TCGA	2 cut(s)	560, 670
TasI	AATT	2 cut(s)	311, 473
TauI	GCSGC	3 cut(s)	383, 611, 639
Tru1I	TTAA	2 cut(s)	552, 618
Tru9I	TTAA	2 cut(s)	552, 618
TscAI	CASTG	2 cut(s)	268, 714
TseI	GCWGC	1 cut(s)	427
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	268, 714
VneI	GTGCAC	1 cut(s)	111
XapI	RAATTY	1 cut(s)	311
ZraI	GACGTC	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.