Rmu_sc0000600.1_g000039

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000600.1
OG0002284
Physical Location & Seq
Reverse (-)
211676 .. 213152
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000600.1_g000039.1.cds

Sequence Viewer

Length: 1107 bp
atgtcgtttagccatcgaaagactcgtaaactggtatatttaggttcgggacgttacactttggaagctcccttgcactctaatcaaacaaaattgaagaagaagaaaattgctggcaaagaaaaagatgtggtggatgagggtgagcaagaaaatgagaagactgggttggttttggaagttcttgcaagcaatcctcaagagaagactataactttcgtttgggagcatgatgtggcgaacacggatagtgacaaggaggcaaagaagaagaaggatgtcaagaaggagaggaaaaagaatttgtggcggaaaaaaaaaggaccaaacatgaggggaaaggcgctagtgaaagcgttgtcgagggtatgcgatcggcttgggtttggcgacgaggagaggccttctcggcctgtggcgggttcatcggaggagctcaacctgaagcaagagctcttgcaagaacaatgtgacttagcagtagagagggaagtggtagaggggaacattgccaagcttgacggtgctctgcttgatgtgagagagaagtttaagcgtacagtgaacaaaatgcttgctgataccaagactatctccgagctcaactctgagttgtcggatctaatggagttggcggatcttcagcttgctagacaggaagaagcgattaagatggcggaggttgagagagctaaggttaggttggaagcggtggaggttttcaaacaatctgcggagttcacggagcttttgacagaagccggtaggcaaggtgctgctgctaactataaggaacttgatcagaaagggtatttgaattttgacaagattttcgctgatcgagctcctccaagtcccttggaggctgaagatgttgaggagtctggggatgacgaatcttcaaaagctgggtcctttgatggcggtgatggaagtggttcttctggcgaggacgacgtcaggtcttacagtaatcctgagactccgacgccggcaagtaaagctgagaagaggaagaaaattgttcgccaacctattgagaaacgtcgccgtaatgatagtgctccaagttgctcctcgaacgttgatgaggatgttcaggagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

368

Amino Acids

41.17

Weight (kDa)

5.7

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 960
AciI CCGC 7 cut(s) 310, 419, 635, 677, 710, 734, 924
AclI AACGTT 1 cut(s) 1083
AclWI GGATC 2 cut(s) 627, 645
AcsI RAATTY 2 cut(s) 301, 817
AcuI CTGAAG 3 cut(s) 464, 626, 888
AcyI GRCGYC 2 cut(s) 957, 989
AfaI GTAC 1 cut(s) 559
AfiI CCNNNNNNNGG 1 cut(s) 419
AgsI TTSAA 4 cut(s) 97, 724, 817, 903
AhdI GACNNNNNGTC 1 cut(s) 961
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
Alw21I GWGCWC 6 cut(s) 438, 456, 529, 603, 847, 1066
Alw26I GTCTC 1 cut(s) 974
AlwI GGATC 2 cut(s) 627, 645
AoxI GGCC 2 cut(s) 401, 410
ApeKI GCWGC 2 cut(s) 776, 779
ApoI RAATTY 2 cut(s) 301, 817
ArsI GACNNNNNNTTYG 4 cut(s) 815, 847, 896, 928
Asp700I GAANNNNTTC 1 cut(s) 937
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 2 cut(s) 323, 912
AsuHPI GGTGA 2 cut(s) 155, 938
AvaII GGWCC 2 cut(s) 323, 912
BanII GRGCYC 4 cut(s) 438, 456, 603, 847
BbsI GAAGAC 2 cut(s) 167, 212
Bbv12I GWGCWC 6 cut(s) 438, 456, 529, 603, 847, 1066
BbvI GCAGC 2 cut(s) 763, 766
BccI CCATC 4 cut(s) 21, 667, 914, 923
BceAI ACGGC 1 cut(s) 1035
BclI TGATCA 1 cut(s) 799
BcoDI GTCTC 1 cut(s) 974
BfaI CTAG 2 cut(s) 347, 651
BfoI RGCGCY 1 cut(s) 347
BglI GCCNNNNNGGC 1 cut(s) 409
BisI GCNGC 2 cut(s) 777, 780
BlsI GCNGC 2 cut(s) 778, 781
Bme18I GGWCC 2 cut(s) 323, 912
BmeRI GACNNNNNGTC 1 cut(s) 961
BmgT120I GGNCC 2 cut(s) 323, 912
BmiI GGNNCC 1 cut(s) 913
BmrI ACTGGG 1 cut(s) 174
BmuI ACTGGG 1 cut(s) 174
BpiI GAAGAC 2 cut(s) 167, 212
BplI GAGNNNNNCTC 4 cut(s) 391, 423, 590, 622
Bpu10I CCTNAGC 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 183
BsaHI GRCGYC 2 cut(s) 957, 989
BsaJI CCNNGG 1 cut(s) 858
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse118I RCCGGY 2 cut(s) 761, 991
Bse1I ACTGG 2 cut(s) 36, 169
Bse3DI GCAATG 1 cut(s) 507
BseDI CCNNGG 1 cut(s) 858
BseGI GGATG 4 cut(s) 142, 283, 895, 1099
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 3 cut(s) 600, 969, 996
BseNI ACTGG 2 cut(s) 36, 169
BseRI GAGGAG 5 cut(s) 410, 446, 837, 893, 1066
BseXI GCAGC 2 cut(s) 763, 766
BseYI CCCAGC 1 cut(s) 908
Bsh1285I CGRYCG 1 cut(s) 376
BshFI GGCC 2 cut(s) 403, 412
BsiEI CGRYCG 1 cut(s) 376
BsiHKAI GWGCWC 6 cut(s) 438, 456, 529, 603, 847, 1066
BsiSI CCGG 2 cut(s) 762, 992
BslFI GGGAC 2 cut(s) 63, 840
BslI CCNNNNNNNGG 1 cut(s) 419
BsmAI GTCTC 1 cut(s) 974
BsmFI GGGAC 2 cut(s) 63, 840
BsnI GGCC 2 cut(s) 403, 412
Bsp1286I GDGCHC 6 cut(s) 438, 456, 529, 603, 847, 1066
Bsp143I GATC 5 cut(s) 373, 619, 637, 799, 838
BspACI CCGC 7 cut(s) 310, 419, 635, 677, 710, 734, 924
BspANI GGCC 2 cut(s) 403, 412
BspCNI CTCAG 3 cut(s) 601, 970, 997
BspLI GGNNCC 1 cut(s) 913
BspPI GGATC 2 cut(s) 627, 645
BsrDI GCAATG 1 cut(s) 507
BsrFI RCCGGY 2 cut(s) 761, 991
BsrI ACTGG 2 cut(s) 36, 169
BssAI RCCGGY 2 cut(s) 761, 991
BssECI CCNNGG 1 cut(s) 858
BssMI GATC 5 cut(s) 373, 619, 637, 799, 838
BssNI GRCGYC 2 cut(s) 957, 989
BssT1I CCWWGG 1 cut(s) 858
Bst4CI ACNGT 3 cut(s) 524, 562, 971
Bst6I CTCTTC 1 cut(s) 1004
BstACI GRCGYC 2 cut(s) 957, 989
BstC8I GCNNGC 5 cut(s) 115, 190, 576, 648, 993
BstDEI CTNAG 5 cut(s) 475, 609, 693, 978, 1005
BstF5I GGATG 4 cut(s) 142, 283, 895, 1099
BstH2I RGCGCY 1 cut(s) 347
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 5 cut(s) 376, 622, 640, 802, 841
BstMAI GTCTC 1 cut(s) 974
BstMBI GATC 5 cut(s) 373, 619, 637, 799, 838
BstMCI CGRYCG 1 cut(s) 376
BstMWI GCNNNNNNNGC 3 cut(s) 409, 842, 1001
BstV1I GCAGC 2 cut(s) 763, 766
BstV2I GAAGAC 2 cut(s) 167, 212
BstX2I RGATCY 2 cut(s) 619, 637
BstYI RGATCY 2 cut(s) 619, 637
BsuRI GGCC 2 cut(s) 403, 412
BtsCI GGATG 4 cut(s) 142, 283, 895, 1099
BtsIMutI CAGTG 1 cut(s) 567
Cac8I GCNNGC 5 cut(s) 115, 190, 576, 648, 993
CfoI GCGC 1 cut(s) 346
Cfr10I RCCGGY 2 cut(s) 761, 991
Cfr13I GGNCC 2 cut(s) 323, 912
CseI GACGC 1 cut(s) 997
Csp6I GTAC 1 cut(s) 558
CviAII CATG 2 cut(s) 230, 331
CviQI GTAC 1 cut(s) 558
DdeI CTNAG 5 cut(s) 475, 609, 693, 978, 1005
DpnI GATC 5 cut(s) 375, 621, 639, 801, 840
DpnII GATC 5 cut(s) 373, 619, 637, 799, 838
DriI GACNNNNNGTC 1 cut(s) 961
Eam1104I CTCTTC 1 cut(s) 1004
Eam1105I GACNNNNNGTC 1 cut(s) 961
EarI CTCTTC 1 cut(s) 1004
EciI GGCGGA 3 cut(s) 325, 650, 692
Ecl136II GAGCTC 4 cut(s) 436, 454, 601, 845
Eco130I CCWWGG 1 cut(s) 858
Eco147I AGGCCT 1 cut(s) 403
Eco24I GRGCYC 4 cut(s) 438, 456, 603, 847
Eco47I GGWCC 2 cut(s) 323, 912
Eco53kI GAGCTC 4 cut(s) 436, 454, 601, 845
Eco57I CTGAAG 3 cut(s) 464, 626, 888
EcoICRI GAGCTC 4 cut(s) 436, 454, 601, 845
EcoO109I RGGNCCY 1 cut(s) 912
EcoT14I CCWWGG 1 cut(s) 858
EcoT38I GRGCYC 4 cut(s) 438, 456, 603, 847
ErhI CCWWGG 1 cut(s) 858
FaeI CATG 2 cut(s) 233, 334
FaiI YATR 6 cut(s) 37, 212, 231, 332, 370, 789
FalI AAGNNNNNCTT 2 cut(s) 925, 957
FaqI GGGAC 2 cut(s) 63, 840
FatI CATG 2 cut(s) 229, 330
FauI CCCGC 1 cut(s) 412
FbaI TGATCA 1 cut(s) 799
Fnu4HI GCNGC 2 cut(s) 777, 780
FokI GGATG 3 cut(s) 149, 290, 902
FriOI GRGCYC 4 cut(s) 438, 456, 603, 847
Fsp4HI GCNGC 2 cut(s) 777, 780
FspBI CTAG 2 cut(s) 347, 651
GlaI GCGC 1 cut(s) 345
GluI GCNGC 2 cut(s) 777, 780
GsaI CCCAGC 1 cut(s) 912
HaeII RGCGCY 1 cut(s) 347
HaeIII GGCC 2 cut(s) 403, 412
HapII CCGG 2 cut(s) 762, 992
HgaI GACGC 1 cut(s) 997
HhaI GCGC 1 cut(s) 346
Hin1I GRCGYC 2 cut(s) 957, 989
Hin1II CATG 2 cut(s) 233, 334
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 4 cut(s) 22, 881, 896, 982
HpaII CCGG 2 cut(s) 762, 992
HphI GGTGA 2 cut(s) 155, 938
Hpy166II GTNNAC 3 cut(s) 29, 565, 741
Hpy188I TCNGA 6 cut(s) 430, 598, 610, 619, 804, 987
Hpy188III TCNNGA 5 cut(s) 48, 200, 283, 977, 1100
Hpy8I GTNNAC 3 cut(s) 29, 565, 741
Hpy99I CGWCG 4 cut(s) 395, 959, 991, 1050
HpyAV CCTTC 3 cut(s) 268, 280, 414
HpyCH4III ACNGT 3 cut(s) 524, 562, 971
HpyCH4IV ACGT 4 cut(s) 52, 957, 1045, 1083
HpyCH4V TGCA 3 cut(s) 76, 188, 460
HpyF10VI GCNNNNNNNGC 3 cut(s) 409, 842, 1001
HpyF3I CTNAG 5 cut(s) 475, 609, 693, 978, 1005
HpySE526I ACGT 4 cut(s) 52, 957, 1045, 1083
Hsp92I GRCGYC 2 cut(s) 957, 989
Hsp92II CATG 2 cut(s) 233, 334
HspAI GCGC 1 cut(s) 344
KroI GCCGGC 1 cut(s) 991
KroNI GCCGGC 1 cut(s) 993
Ksp22I TGATCA 1 cut(s) 799
Kzo9I GATC 5 cut(s) 373, 619, 637, 799, 838
LmnI GCTCC 7 cut(s) 73, 226, 433, 745, 850, 1069, 1079
Lsp1109I GCAGC 2 cut(s) 763, 766
MaeI CTAG 2 cut(s) 347, 651
MaeII ACGT 4 cut(s) 52, 957, 1045, 1083
MaeIII GTNAC 3 cut(s) 53, 251, 470
MalI GATC 5 cut(s) 375, 621, 639, 801, 840
MboI GATC 5 cut(s) 373, 619, 637, 799, 838
MflI RGATCY 2 cut(s) 619, 637
MhlI GDGCHC 6 cut(s) 438, 456, 529, 603, 847, 1066
MluCI AATT 5 cut(s) 92, 108, 301, 817, 1020
MlyI GAGTC 3 cut(s) 16, 890, 976
MmeI TCCRAC 3 cut(s) 597, 684, 1010
MroNI GCCGGC 1 cut(s) 991
MroXI GAANNNNTTC 1 cut(s) 937
MseI TTAA 2 cut(s) 552, 669
MspI CCGG 2 cut(s) 762, 992
MwoI GCNNNNNNNGC 3 cut(s) 409, 842, 1001
NaeI GCCGGC 1 cut(s) 993
NdeII GATC 5 cut(s) 373, 619, 637, 799, 838
NgoMIV GCCGGC 1 cut(s) 991
NlaIII CATG 2 cut(s) 233, 334
NlaIV GGNNCC 1 cut(s) 913
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 2 cut(s) 251, 470
PceI AGGCCT 1 cut(s) 403
PcsI WCGNNNNNNNCGW 1 cut(s) 22
PdiI GCCGGC 1 cut(s) 993
PdmI GAANNNNTTC 1 cut(s) 937
PfeI GAWTC 1 cut(s) 896
PflFI GACNNNGTC 1 cut(s) 956
PkrI GCNGC 2 cut(s) 778, 781
Ple19I CGATCG 1 cut(s) 376
PleI GAGTC 3 cut(s) 16, 889, 976
PpsI GAGTC 3 cut(s) 16, 889, 976
PpuMI RGGWCCY 1 cut(s) 912
Psp124BI GAGCTC 4 cut(s) 438, 456, 603, 847
Psp1406I AACGTT 1 cut(s) 1083
Psp5II RGGWCCY 1 cut(s) 912
PspFI CCCAGC 1 cut(s) 908
PspN4I GGNNCC 1 cut(s) 913
PspPI GGNCC 2 cut(s) 323, 912
PspPPI RGGWCCY 1 cut(s) 912
PsuI RGATCY 2 cut(s) 619, 637
PsyI GACNNNGTC 1 cut(s) 956
PvuI CGATCG 1 cut(s) 376
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
SacI GAGCTC 4 cut(s) 438, 456, 603, 847
SaqAI TTAA 2 cut(s) 552, 669
SatI GCNGC 2 cut(s) 777, 780
Sau3AI GATC 5 cut(s) 373, 619, 637, 799, 838
Sau96I GGNCC 2 cut(s) 323, 912
SchI GAGTC 3 cut(s) 16, 890, 976
SduI GDGCHC 6 cut(s) 438, 456, 529, 603, 847, 1066
SfiI GGCCNNNNNGGCC 1 cut(s) 409
SinI GGWCC 2 cut(s) 323, 912
SmlI CTYRAG 1 cut(s) 198
SmoI CTYRAG 1 cut(s) 198
Sse9I AATT 5 cut(s) 92, 108, 301, 817, 1020
SseBI AGGCCT 1 cut(s) 403
SsiI CCGC 7 cut(s) 310, 419, 635, 677, 710, 734, 924
SspMI CTAG 2 cut(s) 347, 651
SstI GAGCTC 4 cut(s) 438, 456, 603, 847
StuI AGGCCT 1 cut(s) 403
StyI CCWWGG 1 cut(s) 858
TaaI ACNGT 3 cut(s) 524, 562, 971
TaiI ACGT 4 cut(s) 55, 960, 1048, 1086
TaqI TCGA 4 cut(s) 16, 362, 841, 1079
TasI AATT 5 cut(s) 92, 108, 301, 817, 1020
TfiI GAWTC 1 cut(s) 896
Tru1I TTAA 2 cut(s) 552, 669
Tru9I TTAA 2 cut(s) 552, 669
TscAI CASTG 1 cut(s) 567
TseFI GTSAC 2 cut(s) 251, 470
TseI GCWGC 2 cut(s) 776, 779
Tsp45I GTSAC 2 cut(s) 251, 470
TspDTI ATGAA 1 cut(s) 414
TspGWI ACGGA 2 cut(s) 260, 758
TspRI CASTG 1 cut(s) 567
Tth111I GACNNNGTC 1 cut(s) 956
VpaK11BI GGWCC 2 cut(s) 323, 912
XapI RAATTY 2 cut(s) 301, 817
XmnI GAANNNNTTC 1 cut(s) 937
XspI CTAG 2 cut(s) 347, 651
ZraI GACGTC 1 cut(s) 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.