Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000962.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Forward (+)

79612 .. 80283

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000962.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgataccaaaccttccagccaagctaaagtcacgctttagcaagttatcctcacttcctagaagttctcgctttgctcgatctatagcatcgagtatcgattgtgattttgaagaagctcagcaaaagtcctcgccacaaggcacaaagaatcccatgacgaggtgctggcacgcccgcgcaagaaaagagactgttgaccagctcaaggaaactggagccaaaacagcgtcatcaaagttggagacgtctctggatcttatcttgaagggtgttcatgaactttatcaatttcagggtttggctgaagaatgcaagctaaaagaagagcttctgcaggcccaacgtgacttgctggtagagagggaaaagaacaaatccaccgcggccgacattgccaagcttgacggtgcacttcttgatgtgaaagagaaattcaagcgtgcagtggataaagctattgcggatggtgtcaccctttcgaacctaaatgccgagttagcagccctgaagaaagagaaggccgagagggaagataccatcacccaactgcaaaaggtgcttaccgccaaagagaaagagttggcagacttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

22.1

Weight (kDa)

9.02

Isoelectric Point (pI)

31.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	251
AccII	CGCG	2 cut(s)	180, 386
AciI	CCGC	5 cut(s)	178, 384, 386, 464, 567
AclWI	GGATC	1 cut(s)	264
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	434
AcuI	CTGAAG	2 cut(s)	327, 530
AcyI	GRCGYC	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	162, 208
AgsI	TTSAA	3 cut(s)	113, 268, 439
AluBI	AGCT	7 cut(s)	25, 119, 205, 319, 331, 403, 458
AluI	AGCT	7 cut(s)	25, 119, 205, 319, 331, 403, 458
Alw21I	GWGCWC	1 cut(s)	415
Alw26I	GTCTC	3 cut(s)	185, 239, 255
Alw44I	GTGCAC	1 cut(s)	411
AlwI	GGATC	1 cut(s)	264
AoxI	GGCC	3 cut(s)	339, 387, 522
ApaLI	GTGCAC	1 cut(s)	411
ApeKI	GCWGC	1 cut(s)	503
ApoI	RAATTY	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	330
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	340
AsuHPI	GGTGA	2 cut(s)	466, 535
AsuII	TTCGAA	1 cut(s)	482
BaeGI	GKGCMC	1 cut(s)	415
Bbv12I	GWGCWC	1 cut(s)	415
BbvI	GCAGC	1 cut(s)	515
BccI	CCATC	2 cut(s)	461, 548
BcoDI	GTCTC	3 cut(s)	185, 239, 255
BfaI	CTAG	2 cut(s)	60, 595
BfmI	CTRYAG	2 cut(s)	84, 335
BisI	GCNGC	2 cut(s)	387, 504
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	2 cut(s)	388, 505
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	1 cut(s)	220
BmsI	GCATC	1 cut(s)	98
BpmI	CTGGAG	1 cut(s)	237
Bpu1102I	GCTNAGC	1 cut(s)	120
Bpu14I	TTCGAA	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	384
Bsc4I	CCNNNNNNNGG	2 cut(s)	162, 208
Bse1I	ACTGG	1 cut(s)	220
Bse3DI	GCAATG	1 cut(s)	393
BseCI	ATCGAT	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	384
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	2 cut(s)	162, 208
BseMI	GCAATG	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	1 cut(s)	220
BseSI	GKGCMC	1 cut(s)	415
BseX3I	CGGCCG	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	515
BsgI	GTGCAG	1 cut(s)	465
Bsh1236I	CGCG	2 cut(s)	180, 386
Bsh1285I	CGRYCG	1 cut(s)	390
BshFI	GGCC	3 cut(s)	341, 389, 524
BshVI	ATCGAT	1 cut(s)	99
BsiEI	CGRYCG	1 cut(s)	390
BsiHKAI	GWGCWC	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	162, 208
BsmAI	GTCTC	3 cut(s)	185, 239, 255
BsmBI	CGTCTC	2 cut(s)	239, 255
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	3 cut(s)	341, 389, 524
Bsp119I	TTCGAA	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp143I	GATC	2 cut(s)	80, 256
Bsp1720I	GCTNAGC	1 cut(s)	120
BspACI	CCGC	5 cut(s)	178, 384, 386, 464, 567
BspANI	GGCC	3 cut(s)	341, 389, 524
BspCNI	CTCAG	1 cut(s)	133
BspDI	ATCGAT	1 cut(s)	99
BspFNI	CGCG	2 cut(s)	180, 386
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	220
BspMAI	CTGCAG	1 cut(s)	339
BspPI	GGATC	1 cut(s)	264
BspQI	GCTCTTC	1 cut(s)	321
BspT104I	TTCGAA	1 cut(s)	482
BsrDI	GCAATG	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	384
BssMI	GATC	2 cut(s)	80, 256
BssNI	GRCGYC	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	196, 410
Bst6I	CTCTTC	1 cut(s)	321
BstACI	GRCGYC	1 cut(s)	248
BstAPI	GCANNNNNTGC	1 cut(s)	559
BstBI	TTCGAA	1 cut(s)	482
BstC8I	GCNNGC	6 cut(s)	170, 174, 178, 317, 339, 444
BstDEI	CTNAG	1 cut(s)	120
BstDSI	CCRYGG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	2 cut(s)	180, 386
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	2 cut(s)	83, 259
BstMAI	GTCTC	3 cut(s)	185, 239, 255
BstMBI	GATC	2 cut(s)	80, 256
BstMCI	CGRYCG	1 cut(s)	390
BstMWI	GCNNNNNNNGC	4 cut(s)	227, 395, 500, 559
BstSFI	CTRYAG	2 cut(s)	84, 335
BstSLI	GKGCMC	1 cut(s)	415
BstUI	CGCG	2 cut(s)	180, 386
BstV1I	GCAGC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BstZI	CGGCCG	1 cut(s)	387
Bsu15I	ATCGAT	1 cut(s)	99
BsuRI	GGCC	3 cut(s)	341, 389, 524
BsuTUI	ATCGAT	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	1 cut(s)	453
Cac8I	GCNNGC	6 cut(s)	170, 174, 178, 317, 339, 444
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	340
Cfr42I	CCGCGG	1 cut(s)	387
ClaI	ATCGAT	1 cut(s)	99
CseI	GACGC	1 cut(s)	219
CviAII	CATG	2 cut(s)	157, 278
DdeI	CTNAG	1 cut(s)	120
DpnI	GATC	2 cut(s)	82, 258
DpnII	GATC	2 cut(s)	80, 256
EaeI	YGGCCR	1 cut(s)	387
EagI	CGGCCG	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
EclXI	CGGCCG	1 cut(s)	387
Eco52I	CGGCCG	1 cut(s)	387
Eco57I	CTGAAG	2 cut(s)	327, 530
Esp3I	CGTCTC	2 cut(s)	239, 255
FaeI	CATG	2 cut(s)	160, 281
FaiI	YATR	3 cut(s)	86, 158, 279
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 315, 347
FatI	CATG	2 cut(s)	156, 277
FauI	CCCGC	1 cut(s)	185
Fnu4HI	GCNGC	2 cut(s)	387, 504
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	2 cut(s)	387, 504
FspBI	CTAG	2 cut(s)	60, 595
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	2 cut(s)	387, 504
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	3 cut(s)	341, 389, 524
HgaI	GACGC	1 cut(s)	219
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	248
Hin1II	CATG	2 cut(s)	160, 281
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	1 cut(s)	151
HphI	GGTGA	2 cut(s)	466, 535
Hpy166II	GTNNAC	2 cut(s)	199, 413
Hpy188III	TCNNGA	4 cut(s)	254, 265, 278, 419
Hpy8I	GTNNAC	2 cut(s)	199, 413
HpyAV	CCTTC	3 cut(s)	23, 262, 514
HpyCH4III	ACNGT	2 cut(s)	196, 410
HpyCH4IV	ACGT	2 cut(s)	248, 346
HpyCH4V	TGCA	5 cut(s)	315, 337, 413, 446, 553
HpyF10VI	GCNNNNNNNGC	4 cut(s)	227, 395, 500, 559
HpyF3I	CTNAG	1 cut(s)	120
HpySE526I	ACGT	2 cut(s)	248, 346
Hsp92I	GRCGYC	1 cut(s)	248
Hsp92II	CATG	2 cut(s)	160, 281
HspAI	GCGC	1 cut(s)	180
KspI	CCGCGG	1 cut(s)	387
Kzo9I	GATC	2 cut(s)	80, 256
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	9 cut(s)	30, 154, 201, 215, 239, 281, 323, 341, 521
Lsp1109I	GCAGC	1 cut(s)	515
LweI	GCATC	1 cut(s)	98
MaeI	CTAG	2 cut(s)	60, 595
MaeII	ACGT	2 cut(s)	248, 346
MaeIII	GTNAC	3 cut(s)	30, 347, 472
MalI	GATC	2 cut(s)	82, 258
MboI	GATC	2 cut(s)	80, 256
MboII	GAAGA	5 cut(s)	125, 320, 338, 523, 545
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	2 cut(s)	290, 434
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	5 cut(s)	61, 142, 156, 357, 522
MroXI	GAANNNNTTC	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	386
Mva1269I	GAATGC	1 cut(s)	317
MvnI	CGCG	2 cut(s)	180, 386
MwoI	GCNNNNNNNGC	4 cut(s)	227, 395, 500, 559
NdeII	GATC	2 cut(s)	80, 256
NlaIII	CATG	2 cut(s)	160, 281
NlaIV	GGNNCC	1 cut(s)	220
NmeAIII	GCCGAG	2 cut(s)	520, 550
NmuCI	GTSAC	3 cut(s)	30, 347, 472
NspV	TTCGAA	1 cut(s)	482
PagI	TCATGA	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PctI	GAATGC	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	330
PfeI	GAWTC	1 cut(s)	151
PkrI	GCNGC	2 cut(s)	388, 505
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	340
PstI	CTGCAG	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	256
SacII	CCGCGG	1 cut(s)	387
SapI	GCTCTTC	1 cut(s)	321
SatI	GCNGC	2 cut(s)	387, 504
Sau3AI	GATC	2 cut(s)	80, 256
Sau96I	GGNCC	1 cut(s)	340
SduI	GDGCHC	1 cut(s)	415
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	2 cut(s)	84, 335
Sfr303I	CCGCGG	1 cut(s)	387
SfuI	TTCGAA	1 cut(s)	482
SgrBI	CCGCGG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	290, 434
SsiI	CCGC	5 cut(s)	178, 384, 386, 464, 567
SspMI	CTAG	2 cut(s)	60, 595
TaaI	ACNGT	2 cut(s)	196, 410
TaiI	ACGT	2 cut(s)	251, 349
TaqI	TCGA	4 cut(s)	79, 92, 99, 482
TasI	AATT	2 cut(s)	290, 434
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	1 cut(s)	151
TscAI	CASTG	1 cut(s)	453
TseFI	GTSAC	3 cut(s)	30, 347, 472
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	3 cut(s)	30, 347, 472
TspDTI	ATGAA	2 cut(s)	266, 294
TspRI	CASTG	1 cut(s)	453
VneI	GTGCAC	1 cut(s)	411
XapI	RAATTY	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	330
XspI	CTAG	2 cut(s)	60, 595
ZraI	GACGTC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.