Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008177.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Forward (+)

27536 .. 29025

Gene Structure 1490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008177.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atggatatcaaacaacagcgggtgtgtcatgtgcattactactggatgaacaagaattgccttgatctttgtgttctgtcacactggtcactgctaattcacttggctcttactcgtgagcctgcgacaattcgaatgaacaagaggatcaatgaaattatgaagaaagcaatggcggaccttggtgggattaaagattatgttaacttcatgattgaagagtttgctaagaagaagaaaatagatggtaaagagaaagatgtggcggatgagggtgagcaagaaataaggagattgggctggttctggaagttccggcaggcaagtctcaggaggagactacatttgtcattggagaaccggatgtggcagacaaagttgacgtcgaagttggaaacatccctggaccttattttggagggtgcccacgagcattacctctatcagggttcattggaggagcatcagttgaagaaagagtttctacaaacgcaacatgacttaatgatagagagagagagaaaaaaaacaactaaggggaacattgccaagctcgatggtgcctttcttgacgttaaggaaaagttcaagcgtgcggttgacaaaactatcgccgataccaccaccatctctaacctgaactttgagttggcggctttgaaaacagagaaagctgatagggaggatactatctcccaactgcaggaggcagttatcgccaaagaaaaggagttggcggacttccagtctgcaaggcgagaggaggtgacgaagatggtagaagatgagaaaacaagagttggcctggaagcagtggaggccttcaaaaagttcgcggagttcacagagcttttgacaagacagtttgatatcgagcttcgccaagtcccttggcaggcgaagaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

35.63

Weight (kDa)

8.72

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	386
AccB1I	GGYRCC	2 cut(s)	422, 560
AccII	CGCG	1 cut(s)	836
AciI	CCGC	7 cut(s)	19, 176, 266, 596, 653, 737, 836
AclWI	GGATC	1 cut(s)	155
AcyI	GRCGYC	1 cut(s)	383
AfiI	CCNNNNNNNGG	4 cut(s)	415, 445, 703, 895
AgsI	TTSAA	5 cut(s)	218, 472, 589, 661, 826
AhdI	GACNNNNNGTC	1 cut(s)	745
AjnI	CCWGG	2 cut(s)	402, 804
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
AluBI	AGCT	4 cut(s)	553, 674, 850, 877
AluI	AGCT	4 cut(s)	553, 674, 850, 877
Alw26I	GTCTC	2 cut(s)	331, 332
AlwI	GGATC	1 cut(s)	155
AoxI	GGCC	2 cut(s)	802, 819
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
AspS9I	GGNCC	2 cut(s)	178, 406
AsuHPI	GGTGA	2 cut(s)	287, 778
AsuII	TTCGAA	1 cut(s)	133
AvaII	GGWCC	2 cut(s)	178, 406
BaeGI	GKGCMC	1 cut(s)	427
BanI	GGYRCC	2 cut(s)	422, 560
BauI	CACGAG	2 cut(s)	114, 428
BccI	CCATC	4 cut(s)	239, 551, 635, 769
BciT130I	CCWGG	2 cut(s)	404, 806
BciVI	GTATCC	1 cut(s)	679
BcoDI	GTCTC	2 cut(s)	331, 332
BfmI	CTRYAG	1 cut(s)	701
BfuI	GTATCC	1 cut(s)	679
BisI	GCNGC	1 cut(s)	654
BlsI	GCNGC	1 cut(s)	655
Bme1390I	CCNGG	2 cut(s)	404, 806
Bme18I	GGWCC	2 cut(s)	178, 406
BmeRI	GACNNNNNGTC	1 cut(s)	745
BmgT120I	GGNCC	2 cut(s)	178, 406
BmiI	GGNNCC	2 cut(s)	424, 562
BmrFI	CCNGG	2 cut(s)	404, 806
BmsI	GCATC	1 cut(s)	472
Bpu14I	TTCGAA	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	383
BsaJI	CCNNGG	3 cut(s)	181, 402, 890
BsaWI	WCCGGW	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bsc4I	CCNNNNNNNGG	4 cut(s)	415, 445, 703, 895
Bse1I	ACTGG	3 cut(s)	47, 89, 745
Bse3DI	GCAATG	2 cut(s)	177, 543
BseBI	CCWGG	2 cut(s)	404, 806
BseDI	CCNNGG	3 cut(s)	181, 402, 890
BseGI	GGATG	4 cut(s)	51, 274, 369, 398
BseLI	CCNNNNNNNGG	4 cut(s)	415, 445, 703, 895
BseMI	GCAATG	2 cut(s)	177, 543
BseMII	CTCAG	1 cut(s)	343
BseNI	ACTGG	3 cut(s)	47, 89, 745
BseRI	GAGGAG	3 cut(s)	349, 473, 776
BseSI	GKGCMC	1 cut(s)	427
Bsh1236I	CGCG	1 cut(s)	836
BshFI	GGCC	2 cut(s)	804, 821
BshNI	GGYRCC	2 cut(s)	422, 560
BsiSI	CCGG	2 cut(s)	316, 361
BslFI	GGGAC	1 cut(s)	872
BslI	CCNNNNNNNGG	4 cut(s)	415, 445, 703, 895
BsmAI	GTCTC	2 cut(s)	331, 332
BsmFI	GGGAC	1 cut(s)	872
BsnI	GGCC	2 cut(s)	804, 821
Bsp119I	TTCGAA	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp143I	GATC	2 cut(s)	64, 147
BspACI	CCGC	7 cut(s)	19, 176, 266, 596, 653, 737, 836
BspANI	GGCC	2 cut(s)	804, 821
BspCNI	CTCAG	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	836
BspHI	TCATGA	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	424, 562
BspMAI	CTGCAG	1 cut(s)	705
BspPI	GGATC	1 cut(s)	155
BspT104I	TTCGAA	1 cut(s)	133
BspT107I	GGYRCC	2 cut(s)	422, 560
BsrDI	GCAATG	2 cut(s)	177, 543
BsrI	ACTGG	3 cut(s)	47, 89, 745
BssECI	CCNNGG	3 cut(s)	181, 402, 890
BssMI	GATC	2 cut(s)	64, 147
BssNI	GRCGYC	1 cut(s)	383
BssSI	CACGAG	2 cut(s)	114, 428
BssT1I	CCWWGG	2 cut(s)	181, 890
Bst2BI	CACGAG	2 cut(s)	114, 428
Bst2UI	CCWGG	2 cut(s)	404, 806
Bst4CI	ACNGT	1 cut(s)	864
Bst6I	CTCTTC	1 cut(s)	213
BstACI	GRCGYC	1 cut(s)	383
BstBI	TTCGAA	1 cut(s)	133
BstC8I	GCNNGC	4 cut(s)	123, 321, 594, 897
BstDEI	CTNAG	3 cut(s)	228, 329, 534
BstENI	CCTNNNNNAGG	1 cut(s)	443
BstF5I	GGATG	4 cut(s)	51, 274, 369, 398
BstFNI	CGCG	1 cut(s)	836
BstKTI	GATC	2 cut(s)	67, 150
BstMAI	GTCTC	2 cut(s)	331, 332
BstMBI	GATC	2 cut(s)	64, 147
BstMWI	GCNNNNNNNGC	2 cut(s)	716, 818
BstNI	CCWGG	2 cut(s)	404, 806
BstSCI	CCNGG	2 cut(s)	402, 804
BstSFI	CTRYAG	1 cut(s)	701
BstSLI	GKGCMC	1 cut(s)	427
BstUI	CGCG	1 cut(s)	836
BsuI	GTATCC	1 cut(s)	679
BsuRI	GGCC	2 cut(s)	804, 821
BtsCI	GGATG	4 cut(s)	51, 274, 369, 398
BtsI	GCAGTG	2 cut(s)	89, 819
BtsIMutI	CAGTG	3 cut(s)	82, 89, 819
Cac8I	GCNNGC	4 cut(s)	123, 321, 594, 897
CciI	TCATGA	1 cut(s)	210
Cfr13I	GGNCC	2 cut(s)	178, 406
CviAII	CATG	3 cut(s)	29, 211, 497
DdeI	CTNAG	3 cut(s)	228, 329, 534
DpnI	GATC	2 cut(s)	66, 149
DpnII	GATC	2 cut(s)	64, 147
DriI	GACNNNNNGTC	1 cut(s)	745
Eam1104I	CTCTTC	1 cut(s)	213
Eam1105I	GACNNNNNGTC	1 cut(s)	745
EarI	CTCTTC	1 cut(s)	213
EciI	GGCGGA	3 cut(s)	191, 281, 752
Eco130I	CCWWGG	2 cut(s)	181, 890
Eco147I	AGGCCT	1 cut(s)	821
Eco32I	GATATC	2 cut(s)	7, 871
Eco47I	GGWCC	2 cut(s)	178, 406
EcoNI	CCTNNNNNAGG	1 cut(s)	443
EcoRII	CCWGG	2 cut(s)	402, 804
EcoRV	GATATC	2 cut(s)	7, 871
EcoT14I	CCWWGG	2 cut(s)	181, 890
ErhI	CCWWGG	2 cut(s)	181, 890
FaeI	CATG	3 cut(s)	32, 214, 500
FaiI	YATR	5 cut(s)	30, 161, 201, 212, 498
FaqI	GGGAC	1 cut(s)	872
FatI	CATG	3 cut(s)	28, 210, 496
FauI	CCCGC	1 cut(s)	12
Fnu4HI	GCNGC	1 cut(s)	654
FokI	GGATG	4 cut(s)	58, 281, 376, 385
Fsp4HI	GCNGC	1 cut(s)	654
GluI	GCNGC	1 cut(s)	654
HaeIII	GGCC	2 cut(s)	804, 821
HapII	CCGG	2 cut(s)	316, 361
Hin1I	GRCGYC	1 cut(s)	383
Hin1II	CATG	3 cut(s)	32, 214, 500
HincII	GTYRAC	3 cut(s)	205, 381, 601
HindII	GTYRAC	3 cut(s)	205, 381, 601
HpaI	GTTAAC	1 cut(s)	205
HpaII	CCGG	2 cut(s)	316, 361
HphI	GGTGA	2 cut(s)	287, 778
Hpy166II	GTNNAC	4 cut(s)	205, 381, 601, 843
Hpy188III	TCNNGA	5 cut(s)	116, 211, 307, 331, 569
Hpy8I	GTNNAC	4 cut(s)	205, 381, 601, 843
Hpy99I	CGWCG	1 cut(s)	388
HpyAV	CCTTC	1 cut(s)	832
HpyCH4III	ACNGT	1 cut(s)	864
HpyCH4IV	ACGT	2 cut(s)	383, 573
HpyCH4V	TGCA	3 cut(s)	34, 703, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	716, 818
HpyF3I	CTNAG	3 cut(s)	228, 329, 534
HpySE526I	ACGT	2 cut(s)	383, 573
Hsp92I	GRCGYC	1 cut(s)	383
Hsp92II	CATG	3 cut(s)	32, 214, 500
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	64, 147
LmnI	GCTCC	1 cut(s)	460
LweI	GCATC	1 cut(s)	472
MaeII	ACGT	2 cut(s)	383, 573
MaeIII	GTNAC	3 cut(s)	78, 87, 766
MalI	GATC	2 cut(s)	66, 149
MboI	GATC	2 cut(s)	64, 147
MboII	GAAGA	7 cut(s)	175, 230, 244, 247, 484, 784, 794
MhlI	GDGCHC	1 cut(s)	427
MluCI	AATT	4 cut(s)	55, 96, 129, 156
MmeI	TCCRAC	1 cut(s)	372
MseI	TTAA	4 cut(s)	192, 204, 503, 576
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	2 cut(s)	316, 361
MspR9I	CCNGG	2 cut(s)	404, 806
MvaI	CCWGG	2 cut(s)	404, 806
MvnI	CGCG	1 cut(s)	836
MwoI	GCNNNNNNNGC	2 cut(s)	716, 818
NdeII	GATC	2 cut(s)	64, 147
NlaIII	CATG	3 cut(s)	32, 214, 500
NlaIV	GGNNCC	2 cut(s)	424, 562
NmuCI	GTSAC	3 cut(s)	78, 87, 766
NspV	TTCGAA	1 cut(s)	133
PagI	TCATGA	1 cut(s)	210
PceI	AGGCCT	1 cut(s)	821
PkrI	GCNGC	1 cut(s)	655
Psp6I	CCWGG	2 cut(s)	402, 804
PspGI	CCWGG	2 cut(s)	402, 804
PspN4I	GGNNCC	2 cut(s)	424, 562
PspPI	GGNCC	2 cut(s)	178, 406
PstI	CTGCAG	1 cut(s)	705
SaqAI	TTAA	4 cut(s)	192, 204, 503, 576
SatI	GCNGC	1 cut(s)	654
Sau3AI	GATC	2 cut(s)	64, 147
Sau96I	GGNCC	2 cut(s)	178, 406
ScrFI	CCNGG	2 cut(s)	404, 806
SduI	GDGCHC	1 cut(s)	427
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	701
SfuI	TTCGAA	1 cut(s)	133
SinI	GGWCC	2 cut(s)	178, 406
Sse9I	AATT	4 cut(s)	55, 96, 129, 156
SseBI	AGGCCT	1 cut(s)	821
SsiI	CCGC	7 cut(s)	19, 176, 266, 596, 653, 737, 836
StuI	AGGCCT	1 cut(s)	821
StyD4I	CCNGG	2 cut(s)	402, 804
StyI	CCWWGG	2 cut(s)	181, 890
TaaI	ACNGT	1 cut(s)	864
TaiI	ACGT	2 cut(s)	386, 576
TaqI	TCGA	4 cut(s)	133, 386, 555, 873
TasI	AATT	4 cut(s)	55, 96, 129, 156
TauI	GCSGC	1 cut(s)	656
Tru1I	TTAA	4 cut(s)	192, 204, 503, 576
Tru9I	TTAA	4 cut(s)	192, 204, 503, 576
TscAI	CASTG	3 cut(s)	89, 96, 819
TseFI	GTSAC	3 cut(s)	78, 87, 766
Tsp45I	GTSAC	3 cut(s)	78, 87, 766
TspDTI	ATGAA	6 cut(s)	62, 152, 168, 176, 199, 441
TspRI	CASTG	3 cut(s)	89, 96, 819
VpaK11BI	GGWCC	2 cut(s)	178, 406
XagI	CCTNNNNNAGG	1 cut(s)	443
ZraI	GACGTC	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.