Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8144522.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 623

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8144522.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 532 bp

atgccgcagaagaggaagattgtcgcctcgaccgttcacccagatccttcaaagaagatgagggttggtgagaagcgtgtggcggaaaagcatgctgcggctagccagaaagatgttggcggaaaatttgtctccgacaaccctgtcgtaggattagtgcaaagtgcacgccctaatcaacaggctttcctgcacaagttctgtgagcgtcttggttttggttgtgaggcgagagttcctcgtccagcggtgtcgtcaaagctagagaaatccctagatctaattttgaaggagagggagaaaaataagtccaccgctggggacattgccaagcttgacggtgcctttcttgatgtcaaagagaaattcaagtgtacggtggataagactatcgccgataccaccatcattgccagccttaatgctaagttggcggccttgaagaaggagaaagctgagagagaagataccatcgcccaatgcttaacgccaaagaaaaagagttggcgaactttcagtcttctaggcaagc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

19.51

Weight (kDa)

9.86

Isoelectric Point (pI)

26.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	341
AciI	CCGC	7 cut(s)	5, 83, 98, 120, 248, 315, 434
AclWI	GGATC	1 cut(s)	38
AcsI	RAATTY	2 cut(s)	125, 365
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	2 cut(s)	149, 318
AgsI	TTSAA	4 cut(s)	51, 289, 370, 442
AluBI	AGCT	3 cut(s)	262, 334, 455
AluI	AGCT	3 cut(s)	262, 334, 455
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	136
Alw44I	GTGCAC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	1 cut(s)	435
ApaLI	GTGCAC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	2 cut(s)	125, 365
ArsI	GACNNNNNNTTYG	1 cut(s)	502
AsuHPI	GGTGA	2 cut(s)	29, 80
AsuNHI	GCTAGC	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	169
BanI	GGYRCC	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	2 cut(s)	413, 479
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	4 cut(s)	102, 263, 275, 524
BglII	AGATCT	1 cut(s)	277
BisI	GCNGC	4 cut(s)	5, 96, 99, 435
BlsI	GCNGC	4 cut(s)	6, 97, 100, 436
BmiI	GGNNCC	1 cut(s)	343
BmtI	GCTAGC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	512
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 318
Bse3DI	GCAATG	2 cut(s)	324, 408
BseLI	CCNNNNNNNGG	2 cut(s)	149, 318
BseMI	GCAATG	2 cut(s)	324, 408
BseMII	CTCAG	1 cut(s)	447
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	82
BseYI	CCCAGC	1 cut(s)	317
BsgI	GTGCAG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	437
BshNI	GGYRCC	1 cut(s)	341
BsiEI	CGRYCG	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	149, 318
BsmAI	GTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	43, 277
BspACI	CCGC	7 cut(s)	5, 83, 98, 120, 248, 315, 434
BspANI	GGCC	1 cut(s)	437
BspCNI	CTCAG	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	343
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	341
BsrDI	GCAATG	2 cut(s)	324, 408
BssMI	GATC	2 cut(s)	43, 277
Bst4CI	ACNGT	3 cut(s)	34, 341, 379
Bst6I	CTCTTC	1 cut(s)	5
BstC8I	GCNNGC	5 cut(s)	93, 103, 169, 415, 530
BstDEI	CTNAG	2 cut(s)	426, 456
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstKTI	GATC	2 cut(s)	46, 280
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	2 cut(s)	43, 277
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNSI	RCATGY	1 cut(s)	95
BstSLI	GKGCMC	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	82
BstV2I	GAAGAC	1 cut(s)	512
BstX2I	RGATCY	2 cut(s)	43, 277
BstYI	RGATCY	2 cut(s)	43, 277
BsuRI	GGCC	1 cut(s)	437
BtgZI	GCGATG	1 cut(s)	457
Cac8I	GCNNGC	5 cut(s)	93, 103, 169, 415, 530
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	375
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	8 cut(s)	101, 105, 185, 262, 334, 417, 437, 455
CviKI_1	RGCY	8 cut(s)	101, 105, 185, 262, 334, 417, 437, 455
CviQI	GTAC	1 cut(s)	375
DdeI	CTNAG	2 cut(s)	426, 456
DpnI	GATC	2 cut(s)	45, 279
DpnII	GATC	2 cut(s)	43, 277
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
EciI	GGCGGA	2 cut(s)	98, 135
EcoNI	CCTNNNNNAGG	1 cut(s)	147
FaeI	CATG	1 cut(s)	95
FaiI	YATR	1 cut(s)	93
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	5, 96, 99, 435
Fsp4HI	GCNGC	4 cut(s)	5, 96, 99, 435
FspBI	CTAG	4 cut(s)	102, 263, 275, 524
GluI	GCNGC	4 cut(s)	5, 96, 99, 435
GsaI	CCCAGC	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	437
HgaI	GACGC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	95
HindIII	AAGCTT	1 cut(s)	332
HphI	GGTGA	2 cut(s)	29, 80
Hpy166II	GTNNAC	4 cut(s)	37, 167, 312, 375
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	4 cut(s)	37, 167, 312, 375
HpyAV	CCTTC	3 cut(s)	57, 283, 439
HpyCH4III	ACNGT	3 cut(s)	34, 341, 379
HpyCH4V	TGCA	3 cut(s)	160, 167, 193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	2 cut(s)	426, 456
Hsp92II	CATG	1 cut(s)	95
Kzo9I	GATC	2 cut(s)	43, 277
LpnPI	CCDG	8 cut(s)	54, 119, 156, 167, 203, 258, 303, 427
Lsp1109I	GCAGC	1 cut(s)	82
MaeI	CTAG	4 cut(s)	102, 263, 275, 524
MalI	GATC	2 cut(s)	45, 279
MboI	GATC	2 cut(s)	43, 277
MboII	GAAGA	6 cut(s)	22, 28, 67, 454, 476, 512
MflI	RGATCY	2 cut(s)	43, 277
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	3 cut(s)	125, 282, 365
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	6 cut(s)	6, 37, 54, 220, 249, 288
MseI	TTAA	2 cut(s)	420, 485
MspA1I	CMGCKG	2 cut(s)	248, 317
MwoI	GCNNNNNNNGC	1 cut(s)	431
NdeII	GATC	2 cut(s)	43, 277
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	343
NspI	RCATGY	1 cut(s)	95
PaeI	GCATGC	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PkrI	GCNGC	4 cut(s)	6, 97, 100, 436
PspFI	CCCAGC	1 cut(s)	317
PspN4I	GGNNCC	1 cut(s)	343
PsuI	RGATCY	2 cut(s)	43, 277
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	420, 485
SatI	GCNGC	4 cut(s)	5, 96, 99, 435
Sau3AI	GATC	2 cut(s)	43, 277
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	3 cut(s)	264, 336, 457
SphI	GCATGC	1 cut(s)	95
Sse9I	AATT	3 cut(s)	125, 282, 365
SsiI	CCGC	7 cut(s)	5, 83, 98, 120, 248, 315, 434
SspMI	CTAG	4 cut(s)	102, 263, 275, 524
TaaI	ACNGT	3 cut(s)	34, 341, 379
TaqI	TCGA	1 cut(s)	29
TasI	AATT	3 cut(s)	125, 282, 365
TauI	GCSGC	3 cut(s)	7, 101, 437
Tru1I	TTAA	2 cut(s)	420, 485
Tru9I	TTAA	2 cut(s)	420, 485
TseI	GCWGC	1 cut(s)	95
VneI	GTGCAC	1 cut(s)	165
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	2 cut(s)	125, 365
XceI	RCATGY	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XspI	CTAG	4 cut(s)	102, 263, 275, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.