Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Reverse (-)

43964296 .. 43967338

Gene Structure 3043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00031260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCGGACAAGGGAGGAAGCAAGGATGGAAGGAAGGATGCTGGCGGGAGCGCCGCTGTTCGCTCCGATTCGGTGGTGAAGGGAGGTGGTTGGCCCATGGCGATGTCAAAGTTAGAGTCGTCGCTTGTCCATATTCCGAAGGGTGTCTTCAACCTTTTTCTCCATCGGGGTTCGTCGGAGGAACCAAAATTGAAGCAAGAGCTTCTACAAGCACAACGCGACTTGGCGGTCGAGAGGGAGAAGAATAAGCGGATTAAGGGAGACATTGCCAAGCTTGACGACGCCCTCCTTGATGTGAAGCGAAGTTCAAGTATCGATAAACATCTCCCAAGGGACATCACCCACAAGCATCCGGTCACCATCTTTGTCCTCGTAGGTGAGGACATATTCGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.48

Weight (kDa)

9.19

Isoelectric Point (pI)

51.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccII	CGCG	1 cut(s)	219
AciI	CCGC	5 cut(s)	5, 45, 54, 227, 250
AcyI	GRCGYC	1 cut(s)	282
AgsI	TTSAA	3 cut(s)	151, 193, 309
AluBI	AGCT	2 cut(s)	202, 274
AluI	AGCT	2 cut(s)	202, 274
Alw26I	GTCTC	1 cut(s)	255
AoxI	GGCC	1 cut(s)	92
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	4 cut(s)	88, 331, 349, 389
BbsI	GAAGAC	1 cut(s)	139
BccI	CCATC	3 cut(s)	20, 171, 368
BcoDI	GTCTC	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	54
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	183
BmsI	GCATC	2 cut(s)	28, 358
BpiI	GAAGAC	1 cut(s)	139
Bsa29I	ATCGAT	1 cut(s)	315
BsaBI	GATNNNNATC	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	96, 329
BsaWI	WCCGGW	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	321
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	96, 329
BseGI	GGATG	3 cut(s)	31, 43, 349
BseJI	GATNNNNATC	1 cut(s)	321
BseMI	GCAATG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	219
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	94
BshVI	ATCGAT	1 cut(s)	315
BsiEI	CGRYCG	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	353
BslFI	GGGAC	1 cut(s)	347
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	94
Bsp19I	CCATGG	1 cut(s)	96
BspACI	CCGC	5 cut(s)	5, 45, 54, 227, 250
BspANI	GGCC	1 cut(s)	94
BspDI	ATCGAT	1 cut(s)	315
BspFNI	CGCG	1 cut(s)	219
BspLI	GGNNCC	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	264
BssECI	CCNNGG	2 cut(s)	96, 329
BssNI	GRCGYC	1 cut(s)	282
BssT1I	CCWWGG	2 cut(s)	96, 329
BstACI	GRCGYC	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	43
BstDSI	CCRYGG	1 cut(s)	96
BstEII	GGTNACC	1 cut(s)	355
BstF5I	GGATG	3 cut(s)	31, 43, 349
BstFNI	CGCG	1 cut(s)	219
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstMAI	GTCTC	1 cut(s)	255
BstMCI	CGRYCG	1 cut(s)	231
BstPI	GGTNACC	1 cut(s)	355
BstUI	CGCG	1 cut(s)	219
BstV2I	GAAGAC	1 cut(s)	139
Bsu15I	ATCGAT	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	94
BsuTUI	ATCGAT	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	96
BtgZI	GCGATG	1 cut(s)	116
BtsCI	GGATG	3 cut(s)	31, 43, 349
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	93
ClaI	ATCGAT	1 cut(s)	315
CseI	GACGC	1 cut(s)	290
CviAII	CATG	2 cut(s)	97, 396
CviJI	RGCY	4 cut(s)	94, 202, 274, 394
CviKI_1	RGCY	4 cut(s)	94, 202, 274, 394
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	96, 329
Eco91I	GGTNACC	1 cut(s)	355
EcoO65I	GGTNACC	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	96, 329
ErhI	CCWWGG	2 cut(s)	96, 329
FaeI	CATG	2 cut(s)	100, 399
FaiI	YATR	4 cut(s)	98, 132, 386, 397
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	2 cut(s)	96, 395
FauI	CCCGC	1 cut(s)	38
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	3 cut(s)	38, 50, 336
Fsp4HI	GCNGC	1 cut(s)	54
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	1 cut(s)	54
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	94
HapII	CCGG	1 cut(s)	353
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	100, 399
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	2 cut(s)	68, 116
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	4 cut(s)	88, 331, 349, 389
Hpy188I	TCNGA	3 cut(s)	67, 138, 178
Hpy188III	TCNNGA	1 cut(s)	232
Hpy99I	CGWCG	3 cut(s)	124, 178, 284
HpyAV	CCTTC	4 cut(s)	24, 28, 73, 133
Hsp92I	GRCGYC	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	100, 399
HspAI	GCGC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	48, 68
LpnPI	CCDG	2 cut(s)	27, 366
LweI	GCATC	2 cut(s)	28, 358
MaeIII	GTNAC	1 cut(s)	355
MboII	GAAGA	2 cut(s)	139, 253
MluCI	AATT	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	7 cut(s)	8, 77, 172, 228, 296, 373, 380
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	1 cut(s)	101
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	1 cut(s)	353
MvnI	CGCG	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	96
NlaIII	CATG	2 cut(s)	100, 399
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PspEI	GGTNACC	1 cut(s)	355
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	93
RseI	CAYNNNNRTG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	1 cut(s)	54
Sau96I	GGNCC	1 cut(s)	93
SchI	GAGTC	1 cut(s)	125
SetI	ASST	5 cut(s)	88, 156, 204, 276, 379
SfaNI	GCATC	2 cut(s)	28, 358
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	188
SsiI	CCGC	5 cut(s)	5, 45, 54, 227, 250
StyI	CCWWGG	2 cut(s)	96, 329
TaqI	TCGA	3 cut(s)	231, 315, 390
TasI	AATT	1 cut(s)	188
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TseFI	GTSAC	1 cut(s)	355
Tsp45I	GTSAC	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.