Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8467979.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Forward (+)

955 .. 1806

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8467979.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgttggccggagagcagttgatcagccttctgagggggtctcttgttccgcaaaagaggaagatcattgcctcaaccattccccctaatccatcaaagaggaccaaggttgttgagaagcacatggtctttggcggtggtgaaagctctggcggaggagggtttgtctcccacaaccctgggctggggttggtgcaaggagcacctattagtcagcaggtctttctacacaaagtatgtgaacgtctaggccttggtcgtgaagggagggtggctaggcctgcggcggagtcaaagttagattcgtcgcttgatcatatcctgaagggtgccttcgatctctttcttcatcaaagtttgttggaggagcgcaagctaaaagaggaacttttgcaggttcagcttgacttggatgtcgatagggagaagaataaacggaagttcaagtatgcggttgagaaagctgttgccgacacaactaagattaccactctgacttcagagttagaggcattgaaaacggagaaggtagagagagaagacactatttctcagttccaagaggctctcaccatgaagaagcaggagttagtggacctccagtctactaggcgggaggaagcggccaatatgtcagaggatgagaaggcaaaggttgggcgggaatctgtggaggattttaagaagtcggcggcatttacagagcttcttactgatgccgataggcaaggtgctgccgctaactttgaggaactcaagggcaagaggtatttgaactatgacaagattatcgctaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

266

Amino Acids

29.59

Weight (kDa)

7.78

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	413
Acc36I	ACCTGC	2 cut(s)	208, 385
AccB1I	GGYRCC	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	605
AcoI	YGGCCR	2 cut(s)	6, 624
AcuI	CTGAAG	2 cut(s)	344, 483
AfiI	CCNNNNNNNGG	3 cut(s)	34, 184, 185
AgsI	TTSAA	3 cut(s)	445, 517, 775
AhdI	GACNNNNNGTC	1 cut(s)	601
AjnI	CCWGG	1 cut(s)	178
AluBI	AGCT	5 cut(s)	147, 376, 403, 464, 706
AluI	AGCT	5 cut(s)	147, 376, 403, 464, 706
Alw21I	GWGCWC	1 cut(s)	205
Alw26I	GTCTC	2 cut(s)	45, 172
AoxI	GGCC	4 cut(s)	6, 250, 278, 624
ApeKI	GCWGC	1 cut(s)	734
AspLEI	GCGC	1 cut(s)	372
AspS9I	GGNCC	2 cut(s)	102, 595
AsuHPI	GGTGA	2 cut(s)	152, 562
AvaII	GGWCC	2 cut(s)	102, 595
BanI	GGYRCC	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	721
BccI	CCATC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	180
BclI	TGATCA	2 cut(s)	21, 313
BcoDI	GTCTC	2 cut(s)	45, 172
BfaI	CTAG	3 cut(s)	248, 276, 609
BfuAI	ACCTGC	2 cut(s)	208, 385
BisI	GCNGC	5 cut(s)	285, 624, 693, 735, 738
BlsI	GCNGC	5 cut(s)	286, 625, 694, 736, 739
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	2 cut(s)	102, 595
BmeRI	GACNNNNNGTC	1 cut(s)	601
BmgT120I	GGNCC	2 cut(s)	102, 595
BmiI	GGNNCC	1 cut(s)	331
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	1 cut(s)	706
BpiI	GAAGAC	1 cut(s)	546
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BpmI	CTGGAG	1 cut(s)	584
BpuEI	CTTGAG	1 cut(s)	740
BsaI	GGTCTC	1 cut(s)	45
BsaJI	CCNNGG	4 cut(s)	105, 178, 179, 253
BsaXI	ACNNNNNCTCC	4 cut(s)	150, 180, 281, 311
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 184, 185
Bse1I	ACTGG	1 cut(s)	601
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	180
BseDI	CCNNGG	4 cut(s)	105, 178, 179, 253
BseGI	GGATG	2 cut(s)	418, 646
BseLI	CCNNNNNNNGG	3 cut(s)	34, 184, 185
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	2 cut(s)	23, 566
BseNI	ACTGG	1 cut(s)	601
BseRI	GAGGAG	2 cut(s)	171, 380
BseXI	GCAGC	1 cut(s)	721
BseYI	CCCAGC	1 cut(s)	184
BshFI	GGCC	4 cut(s)	8, 252, 280, 626
BshNI	GGYRCC	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	205
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	3 cut(s)	34, 184, 185
BsmAI	GTCTC	2 cut(s)	45, 172
BsnI	GGCC	4 cut(s)	8, 252, 280, 626
Bso31I	GGTCTC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	4 cut(s)	21, 63, 313, 337
BspANI	GGCC	4 cut(s)	8, 252, 280, 626
BspCNI	CTCAG	2 cut(s)	24, 565
BspLI	GGNNCC	1 cut(s)	331
BspMI	ACCTGC	2 cut(s)	208, 385
BspT107I	GGYRCC	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	601
BssECI	CCNNGG	4 cut(s)	105, 178, 179, 253
BssMI	GATC	4 cut(s)	21, 63, 313, 337
BssT1I	CCWWGG	2 cut(s)	105, 253
Bst2UI	CCWGG	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	282, 374
BstDEI	CTNAG	3 cut(s)	32, 480, 552
BstF5I	GGATG	2 cut(s)	418, 646
BstHHI	GCGC	1 cut(s)	372
BstKTI	GATC	4 cut(s)	24, 66, 316, 340
BstMAI	GTCTC	2 cut(s)	45, 172
BstMBI	GATC	4 cut(s)	21, 63, 313, 337
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 400
BstNI	CCWGG	1 cut(s)	180
BstSCI	CCNGG	1 cut(s)	178
BstV1I	GCAGC	1 cut(s)	721
BstV2I	GAAGAC	1 cut(s)	546
BstXI	CCANNNNNNTGG	1 cut(s)	179
BsuRI	GGCC	4 cut(s)	8, 252, 280, 626
BtsCI	GGATG	2 cut(s)	418, 646
BveI	ACCTGC	2 cut(s)	208, 385
Cac8I	GCNNGC	2 cut(s)	282, 374
CfoI	GCGC	1 cut(s)	372
Cfr13I	GGNCC	2 cut(s)	102, 595
CviAII	CATG	2 cut(s)	124, 574
DdeI	CTNAG	3 cut(s)	32, 480, 552
DpnI	GATC	4 cut(s)	23, 65, 315, 339
DpnII	GATC	4 cut(s)	21, 63, 313, 337
DrdI	GACNNNNNNGTC	1 cut(s)	413
DriI	GACNNNNNGTC	1 cut(s)	601
DseDI	GACNNNNNNGTC	1 cut(s)	413
EaeI	YGGCCR	2 cut(s)	6, 624
Eam1105I	GACNNNNNGTC	1 cut(s)	601
EciI	GGCGGA	2 cut(s)	168, 302
Eco130I	CCWWGG	2 cut(s)	105, 253
Eco147I	AGGCCT	2 cut(s)	252, 280
Eco31I	GGTCTC	1 cut(s)	45
Eco47I	GGWCC	2 cut(s)	102, 595
Eco57I	CTGAAG	2 cut(s)	344, 483
EcoRII	CCWGG	1 cut(s)	178
EcoT14I	CCWWGG	2 cut(s)	105, 253
ErhI	CCWWGG	2 cut(s)	105, 253
FaeI	CATG	2 cut(s)	127, 577
FaiI	YATR	7 cut(s)	125, 238, 318, 450, 575, 632, 780
FalI	AAGNNNNNCTT	4 cut(s)	317, 349, 372, 404
FatI	CATG	2 cut(s)	123, 573
FauI	CCCGC	2 cut(s)	606, 654
FbaI	TGATCA	2 cut(s)	21, 313
FblI	GTMKAC	1 cut(s)	605
Fnu4HI	GCNGC	5 cut(s)	285, 624, 693, 735, 738
FokI	GGATG	2 cut(s)	425, 653
Fsp4HI	GCNGC	5 cut(s)	285, 624, 693, 735, 738
FspBI	CTAG	3 cut(s)	248, 276, 609
GlaI	GCGC	1 cut(s)	371
GluI	GCNGC	5 cut(s)	285, 624, 693, 735, 738
GsaI	CCCAGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	584
HaeIII	GGCC	4 cut(s)	8, 252, 280, 626
HapII	CCGG	1 cut(s)	9
HhaI	GCGC	1 cut(s)	372
Hin1II	CATG	2 cut(s)	127, 577
Hin6I	GCGC	1 cut(s)	370
HinP1I	GCGC	1 cut(s)	370
HinfI	GANTC	3 cut(s)	290, 302, 665
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	2 cut(s)	152, 562
Hpy166II	GTNNAC	3 cut(s)	242, 595, 606
Hpy188I	TCNGA	4 cut(s)	33, 495, 502, 637
Hpy188III	TCNNGA	2 cut(s)	260, 322
Hpy8I	GTNNAC	3 cut(s)	242, 595, 606
Hpy99I	CGWCG	1 cut(s)	310
HpyAV	CCTTC	6 cut(s)	38, 257, 319, 343, 520, 640
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	2 cut(s)	196, 394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 400
HpyF3I	CTNAG	3 cut(s)	32, 480, 552
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	2 cut(s)	127, 577
HspAI	GCGC	1 cut(s)	370
Ksp22I	TGATCA	2 cut(s)	21, 313
Kzo9I	GATC	4 cut(s)	21, 63, 313, 337
LmnI	GCTCC	2 cut(s)	200, 367
Lsp1109I	GCAGC	1 cut(s)	721
LweI	GCATC	1 cut(s)	706
MaeI	CTAG	3 cut(s)	248, 276, 609
MaeII	ACGT	1 cut(s)	244
MalI	GATC	4 cut(s)	23, 65, 315, 339
MboI	GATC	4 cut(s)	21, 63, 313, 337
MboII	GAAGA	5 cut(s)	73, 338, 439, 551, 589
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	1 cut(s)	796
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	342
MseI	TTAA	1 cut(s)	681
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	2 cut(s)	281, 400
NdeII	GATC	4 cut(s)	21, 63, 313, 337
NlaIII	CATG	2 cut(s)	127, 577
NlaIV	GGNNCC	1 cut(s)	331
PasI	CCCWGGG	1 cut(s)	179
PceI	AGGCCT	2 cut(s)	252, 280
PfeI	GAWTC	2 cut(s)	302, 665
PkrI	GCNGC	5 cut(s)	286, 625, 694, 736, 739
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	178
PspFI	CCCAGC	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	2 cut(s)	102, 595
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	5 cut(s)	285, 624, 693, 735, 738
Sau3AI	GATC	4 cut(s)	21, 63, 313, 337
Sau96I	GGNCC	2 cut(s)	102, 595
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	1 cut(s)	205
SfaNI	GCATC	1 cut(s)	706
SinI	GGWCC	2 cut(s)	102, 595
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
Sse9I	AATT	1 cut(s)	796
SseBI	AGGCCT	2 cut(s)	252, 280
SspMI	CTAG	3 cut(s)	248, 276, 609
StuI	AGGCCT	2 cut(s)	252, 280
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	2 cut(s)	105, 253
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	336, 417
TasI	AATT	1 cut(s)	796
TauI	GCSGC	4 cut(s)	287, 626, 695, 740
TfiI	GAWTC	2 cut(s)	302, 665
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TseI	GCWGC	1 cut(s)	734
TspDTI	ATGAA	2 cut(s)	338, 590
TspGWI	ACGGA	2 cut(s)	451, 536
VpaK11BI	GGWCC	2 cut(s)	102, 595
XmiI	GTMKAC	1 cut(s)	605
XspI	CTAG	3 cut(s)	248, 276, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.