Rmu_sc0006670.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006670.1
OG0002284
Physical Location & Seq
Forward (+)
79684 .. 80046
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006670.1_g000015.1.cds

Sequence Viewer

Length: 363 bp
atggataagactatcgccgatactgccaccattgccagccttaatgctgagttggctgccttgaagaaagagaaagctgagagagaagataccatcgcccaattgcaagacgtgcttaaagccaaagaaaaagagttggcggacttccagtcggctaggcaagcagagatagccaagctggcggaggatgagagggagatggtgcaccaagaggtagtttatgctttcaagaaatcagcagagttcaaggagcttctgacggatgctggtaaacaaggtaccgcctccaactttaaagagcttaaagatagcggctacctgaactttgccaagatactagctgatcggtcccctccaaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.35

Weight (kDa)

5.31

Isoelectric Point (pI)

22.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 278
AccB1I GGYRCC 1 cut(s) 278
AciI CCGC 4 cut(s) 140, 182, 282, 312
AfaI GTAC 1 cut(s) 280
AgsI TTSAA 3 cut(s) 64, 229, 247
AhdI GACNNNNNGTC 1 cut(s) 148
AjiI CACGTC 1 cut(s) 112
AluBI AGCT 5 cut(s) 77, 178, 253, 301, 341
AluI AGCT 5 cut(s) 77, 178, 253, 301, 341
Alw21I GWGCWC 1 cut(s) 207
Alw44I GTGCAC 1 cut(s) 203
ApaLI GTGCAC 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 56
Asp718I GGTACC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 348
AvaII GGWCC 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 207
BanI GGYRCC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 43
BccI CCATC 2 cut(s) 101, 193
BfaI CTAG 2 cut(s) 156, 338
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 2 cut(s) 57, 313
BlsI GCNGC 2 cut(s) 58, 314
Bme18I GGWCC 1 cut(s) 348
BmeRI GACNNNNNGTC 1 cut(s) 148
BmgBI CACGTC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 348
BmiI GGNNCC 2 cut(s) 280, 350
BmsI GCATC 1 cut(s) 253
Bse1I ACTGG 1 cut(s) 148
Bse3DI GCAATG 1 cut(s) 30
BseGI GGATG 2 cut(s) 193, 268
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 2 cut(s) 39, 69
BseNI ACTGG 1 cut(s) 148
BseSI GKGCMC 1 cut(s) 207
BseXI GCAGC 1 cut(s) 43
BshNI GGYRCC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 207
BslFI GGGAC 1 cut(s) 334
BsmFI GGGAC 1 cut(s) 334
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 343
BspACI CCGC 4 cut(s) 140, 182, 282, 312
BspCNI CTCAG 2 cut(s) 40, 70
BspLI GGNNCC 2 cut(s) 280, 350
BspT107I GGYRCC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 30
BsrI ACTGG 1 cut(s) 148
BssMI GATC 1 cut(s) 343
BstAPI GCANNNNNTGC 1 cut(s) 112
BstC8I GCNNGC 3 cut(s) 37, 162, 180
BstDEI CTNAG 2 cut(s) 48, 78
BstF5I GGATG 2 cut(s) 193, 268
BstKTI GATC 1 cut(s) 346
BstMBI GATC 1 cut(s) 343
BstMWI GCNNNNNNNGC 7 cut(s) 23, 32, 53, 112, 161, 170, 179
BstSLI GKGCMC 1 cut(s) 207
BstV1I GCAGC 1 cut(s) 43
BtgZI GCGATG 1 cut(s) 79
BtrI CACGTC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 193, 268
Cac8I GCNNGC 3 cut(s) 37, 162, 180
Cfr13I GGNCC 1 cut(s) 348
Csp6I GTAC 1 cut(s) 279
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 2 cut(s) 48, 78
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
DraI TTTAAA 1 cut(s) 295
DriI GACNNNNNGTC 1 cut(s) 148
Eam1105I GACNNNNNGTC 1 cut(s) 148
EciI GGCGGA 2 cut(s) 155, 197
Eco47I GGWCC 1 cut(s) 348
FaiI YATR 1 cut(s) 222
FalI AAGNNNNNCTT 2 cut(s) 99, 131
FaqI GGGAC 1 cut(s) 334
Fnu4HI GCNGC 2 cut(s) 57, 313
FokI GGATG 2 cut(s) 200, 275
Fsp4HI GCNGC 2 cut(s) 57, 313
FspBI CTAG 2 cut(s) 156, 338
GluI GCNGC 2 cut(s) 57, 313
Hpy166II GTNNAC 2 cut(s) 205, 272
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 1 cut(s) 229
Hpy8I GTNNAC 2 cut(s) 205, 272
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 2 cut(s) 106, 205
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 32, 53, 112, 161, 170, 179
HpyF3I CTNAG 2 cut(s) 48, 78
HpySE526I ACGT 1 cut(s) 111
KpnI GGTACC 1 cut(s) 282
Kzo9I GATC 1 cut(s) 343
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 5 cut(s) 49, 161, 164, 252, 332
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 253
MaeI CTAG 2 cut(s) 156, 338
MaeII ACGT 1 cut(s) 111
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 2 cut(s) 76, 98
MfeI CAATTG 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 5 cut(s) 178, 186, 205, 295, 363
MseI TTAA 4 cut(s) 42, 117, 294, 303
MunI CAATTG 1 cut(s) 101
MwoI GCNNNNNNNGC 7 cut(s) 23, 32, 53, 112, 161, 170, 179
NdeII GATC 1 cut(s) 343
NlaIV GGNNCC 2 cut(s) 280, 350
PkrI GCNGC 2 cut(s) 58, 314
PspN4I GGNNCC 2 cut(s) 280, 350
PspPI GGNCC 1 cut(s) 348
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
SaqAI TTAA 4 cut(s) 42, 117, 294, 303
SatI GCNGC 2 cut(s) 57, 313
Sau3AI GATC 1 cut(s) 343
Sau96I GGNCC 1 cut(s) 348
SduI GDGCHC 1 cut(s) 207
SetI ASST 9 cut(s) 79, 114, 180, 216, 255, 280, 303, 321, 343
SfaNI GCATC 1 cut(s) 253
SinI GGWCC 1 cut(s) 348
Sse9I AATT 1 cut(s) 101
SsiI CCGC 4 cut(s) 140, 182, 282, 312
SspMI CTAG 2 cut(s) 156, 338
TaiI ACGT 1 cut(s) 114
TaqII GACCGA 1 cut(s) 336
TasI AATT 1 cut(s) 101
TauI GCSGC 1 cut(s) 315
Tru1I TTAA 4 cut(s) 42, 117, 294, 303
Tru9I TTAA 4 cut(s) 42, 117, 294, 303
TseI GCWGC 1 cut(s) 56
TspGWI ACGGA 1 cut(s) 275
VneI GTGCAC 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 348
XspI CTAG 2 cut(s) 156, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.