Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008565.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Reverse (-)

89896 .. 90924

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008565.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgaaggttggagagaagcatgcggcgaaaaagcatgttgcggttggccatagagttgtcggaggaaaatttgtctctgacaatcctgtcgtagggttagtgcaaagtgcaccggccaatcaacaggcctttctgcacaagcgagacttgccagccaagagggagaagaataagttcaccactgggggtattgccaagcttgacggtgcccttctcgaagtcaaagagaagttcaagtgtgccgtggataagaccatcgccaataccgccactattgccaatcttaatgtcgagttggttgtcctgaagaaggagaaagctgagagagaagataccaacgctcagttgcaaaaggcgcttacctccaaagagaaacagttggcagacttccactctgctaggcaggaagaaatggccaaactggaggaggacgagagggagatggtgcgccaagaggcgattgatgcttttaagaagtcaacagagttcaaggcgcttctgatggatgctgatggcgattcttcagagagtggctcttctgatggtagtgaagagagtggttcttctggagaagatggcacgagctctgatggtaattctaaggctccgaagctgacaagtaaaactgagaagagaaagatggtttctcatccgcttgtggagaaacgccgccgtggtgatcgtgtttcggggtcctcctctcaagctggtcaagattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

25.92

Weight (kDa)

8.77

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	206
AciI	CCGC	5 cut(s)	23, 41, 267, 653, 670
AcoI	YGGCCR	3 cut(s)	46, 114, 414
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	2 cut(s)	326, 507
AfiI	CCNNNNNNNGG	2 cut(s)	92, 310
AgsI	TTSAA	2 cut(s)	235, 490
AluBI	AGCT	5 cut(s)	199, 320, 585, 613, 707
AluI	AGCT	5 cut(s)	199, 320, 585, 613, 707
Alw21I	GWGCWC	2 cut(s)	112, 587
Alw26I	GTCTC	2 cut(s)	79, 138
Alw44I	GTGCAC	1 cut(s)	108
AoxI	GGCC	4 cut(s)	46, 114, 126, 414
ApaLI	GTGCAC	1 cut(s)	108
ApoI	RAATTY	1 cut(s)	68
Asp700I	GAANNNNTTC	1 cut(s)	173
AspLEI	GCGC	3 cut(s)	358, 450, 496
AspS9I	GGNCC	1 cut(s)	693
AsuHPI	GGTGA	2 cut(s)	169, 689
AvaII	GGWCC	1 cut(s)	693
BaeGI	GKGCMC	2 cut(s)	112, 211
BalI	TGGCCA	2 cut(s)	48, 416
BanI	GGYRCC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	587
BauI	CACGAG	1 cut(s)	580
Bbv12I	GWGCWC	2 cut(s)	112, 587
BccI	CCATC	8 cut(s)	263, 436, 496, 506, 536, 569, 584, 634
BceAI	ACGGC	2 cut(s)	227, 657
BcoDI	GTCTC	2 cut(s)	79, 138
BfaI	CTAG	1 cut(s)	399
BfoI	RGCGCY	2 cut(s)	359, 497
BisI	GCNGC	2 cut(s)	24, 670
BlsI	GCNGC	2 cut(s)	25, 671
Bme18I	GGWCC	1 cut(s)	693
BmgT120I	GGNCC	1 cut(s)	693
BmiI	GGNNCC	3 cut(s)	208, 606, 694
BmrI	ACTGGG	1 cut(s)	192
BmsI	GCATC	2 cut(s)	454, 496
BmuI	ACTGGG	1 cut(s)	192
BplI	GAGNNNNNCTC	2 cut(s)	518, 550
BpmI	CTGGAG	2 cut(s)	443, 588
BpuEI	CTTGAG	1 cut(s)	687
BsaJI	CCNNGG	2 cut(s)	243, 673
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 310
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	2 cut(s)	187, 426
BseDI	CCNNGG	2 cut(s)	243, 673
BseGI	GGATG	2 cut(s)	511, 649
BseLI	CCNNNNNNNGG	2 cut(s)	92, 310
BseMII	CTCAG	3 cut(s)	312, 356, 618
BseNI	ACTGG	2 cut(s)	187, 426
BseRI	GAGGAG	2 cut(s)	440, 688
BseSI	GKGCMC	2 cut(s)	112, 211
BsgI	GTGCAG	1 cut(s)	119
BshFI	GGCC	4 cut(s)	48, 116, 128, 416
BshNI	GGYRCC	1 cut(s)	206
BsiHKAI	GWGCWC	2 cut(s)	112, 587
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	92, 310
BsmAI	GTCTC	2 cut(s)	79, 138
BsnI	GGCC	4 cut(s)	48, 116, 128, 416
Bsp1286I	GDGCHC	3 cut(s)	112, 211, 587
Bsp143I	GATC	1 cut(s)	679
BspACI	CCGC	5 cut(s)	23, 41, 267, 653, 670
BspANI	GGCC	4 cut(s)	48, 116, 128, 416
BspCNI	CTCAG	3 cut(s)	313, 355, 619
BspLI	GGNNCC	3 cut(s)	208, 606, 694
BspQI	GCTCTTC	1 cut(s)	541
BspT107I	GGYRCC	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	2 cut(s)	187, 426
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	243, 673
BssMI	GATC	1 cut(s)	679
BssSI	CACGAG	1 cut(s)	580
Bst2BI	CACGAG	1 cut(s)	580
Bst4CI	ACNGT	2 cut(s)	206, 378
Bst6I	CTCTTC	3 cut(s)	541, 546, 626
BstC8I	GCNNGC	2 cut(s)	21, 153
BstDEI	CTNAG	4 cut(s)	321, 342, 600, 627
BstDSI	CCRYGG	2 cut(s)	243, 673
BstENI	CCTNNNNNAGG	2 cut(s)	90, 308
BstF5I	GGATG	2 cut(s)	511, 649
BstH2I	RGCGCY	2 cut(s)	359, 497
BstHHI	GCGC	3 cut(s)	358, 450, 496
BstKTI	GATC	1 cut(s)	682
BstMAI	GTCTC	2 cut(s)	79, 138
BstMBI	GATC	1 cut(s)	679
BstMWI	GCNNNNNNNGC	5 cut(s)	148, 266, 275, 355, 464
BstNSI	RCATGY	2 cut(s)	23, 38
BstSLI	GKGCMC	2 cut(s)	112, 211
BsuRI	GGCC	4 cut(s)	48, 116, 128, 416
BtgI	CCRYGG	2 cut(s)	243, 673
BtgZI	GCGATG	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	511, 649
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	21, 153
CfoI	GCGC	3 cut(s)	358, 450, 496
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	693
CviAII	CATG	2 cut(s)	20, 35
DdeI	CTNAG	4 cut(s)	321, 342, 600, 627
DpnI	GATC	1 cut(s)	681
DpnII	GATC	1 cut(s)	679
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
EaeI	YGGCCR	3 cut(s)	46, 114, 414
Eam1104I	CTCTTC	3 cut(s)	541, 546, 626
EarI	CTCTTC	3 cut(s)	541, 546, 626
Ecl136II	GAGCTC	1 cut(s)	585
Eco147I	AGGCCT	1 cut(s)	128
Eco24I	GRGCYC	1 cut(s)	587
Eco47I	GGWCC	1 cut(s)	693
Eco53kI	GAGCTC	1 cut(s)	585
Eco57I	CTGAAG	2 cut(s)	326, 507
EcoICRI	GAGCTC	1 cut(s)	585
EcoNI	CCTNNNNNAGG	2 cut(s)	90, 308
EcoO109I	RGGNCCY	1 cut(s)	693
EcoT38I	GRGCYC	1 cut(s)	587
FaeI	CATG	2 cut(s)	23, 38
FaiI	YATR	3 cut(s)	21, 36, 51
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FatI	CATG	2 cut(s)	19, 34
Fnu4HI	GCNGC	2 cut(s)	24, 670
FokI	GGATG	2 cut(s)	518, 636
FriOI	GRGCYC	1 cut(s)	587
Fsp4HI	GCNGC	2 cut(s)	24, 670
FspBI	CTAG	1 cut(s)	399
GlaI	GCGC	3 cut(s)	357, 449, 495
GluI	GCNGC	2 cut(s)	24, 670
GsuI	CTGGAG	2 cut(s)	443, 588
HaeII	RGCGCY	2 cut(s)	359, 497
HaeIII	GGCC	4 cut(s)	48, 116, 128, 416
HapII	CCGG	1 cut(s)	113
HhaI	GCGC	3 cut(s)	358, 450, 496
Hin1II	CATG	2 cut(s)	23, 38
Hin6I	GCGC	3 cut(s)	356, 448, 494
HinP1I	GCGC	3 cut(s)	356, 448, 494
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	518
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	2 cut(s)	169, 689
Hpy166II	GTNNAC	3 cut(s)	110, 177, 480
Hpy188I	TCNGA	7 cut(s)	62, 79, 501, 526, 541, 589, 609
Hpy188III	TCNNGA	4 cut(s)	215, 304, 567, 713
Hpy8I	GTNNAC	3 cut(s)	110, 177, 480
HpyAV	CCTTC	2 cut(s)	221, 304
HpyCH4III	ACNGT	2 cut(s)	206, 378
HpyCH4V	TGCA	4 cut(s)	103, 110, 136, 349
HpyF10VI	GCNNNNNNNGC	5 cut(s)	148, 266, 275, 355, 464
HpyF3I	CTNAG	4 cut(s)	321, 342, 600, 627
Hsp92II	CATG	2 cut(s)	23, 38
HspAI	GCGC	3 cut(s)	356, 448, 494
Kzo9I	GATC	1 cut(s)	679
LguI	GCTCTTC	1 cut(s)	541
LmnI	GCTCC	1 cut(s)	610
LweI	GCATC	2 cut(s)	454, 496
MaeI	CTAG	1 cut(s)	399
MalI	GATC	1 cut(s)	681
MboI	GATC	1 cut(s)	679
MhlI	GDGCHC	3 cut(s)	112, 211, 587
MlsI	TGGCCA	2 cut(s)	48, 416
MluCI	AATT	2 cut(s)	68, 595
MluNI	TGGCCA	2 cut(s)	48, 416
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	9 cut(s)	56, 153, 373, 418, 421, 429, 448, 706, 709
Mox20I	TGGCCA	2 cut(s)	48, 416
MroXI	GAANNNNTTC	1 cut(s)	173
MscI	TGGCCA	2 cut(s)	48, 416
MseI	TTAA	2 cut(s)	285, 471
Msp20I	TGGCCA	2 cut(s)	48, 416
MspI	CCGG	1 cut(s)	113
MwoI	GCNNNNNNNGC	5 cut(s)	148, 266, 275, 355, 464
NdeII	GATC	1 cut(s)	679
NlaIII	CATG	2 cut(s)	23, 38
NlaIV	GGNNCC	3 cut(s)	208, 606, 694
NspI	RCATGY	2 cut(s)	23, 38
PaeI	GCATGC	1 cut(s)	23
PceI	AGGCCT	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	541
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	1 cut(s)	518
PkrI	GCNGC	2 cut(s)	25, 671
PpuMI	RGGWCCY	1 cut(s)	693
Psp124BI	GAGCTC	1 cut(s)	587
Psp5II	RGGWCCY	1 cut(s)	693
PspN4I	GGNNCC	3 cut(s)	208, 606, 694
PspPI	GGNCC	1 cut(s)	693
PspPPI	RGGWCCY	1 cut(s)	693
SacI	GAGCTC	1 cut(s)	587
SapI	GCTCTTC	1 cut(s)	541
SaqAI	TTAA	2 cut(s)	285, 471
SatI	GCNGC	2 cut(s)	24, 670
Sau3AI	GATC	1 cut(s)	679
Sau96I	GGNCC	1 cut(s)	693
SduI	GDGCHC	3 cut(s)	112, 211, 587
SetI	ASST	7 cut(s)	9, 201, 322, 365, 587, 615, 709
SfaNI	GCATC	2 cut(s)	454, 496
SinI	GGWCC	1 cut(s)	693
SmlI	CTYRAG	1 cut(s)	702
SmoI	CTYRAG	1 cut(s)	702
SphI	GCATGC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	68, 595
SseBI	AGGCCT	1 cut(s)	128
SsiI	CCGC	5 cut(s)	23, 41, 267, 653, 670
SspMI	CTAG	1 cut(s)	399
SstI	GAGCTC	1 cut(s)	587
StuI	AGGCCT	1 cut(s)	128
TaaI	ACNGT	2 cut(s)	206, 378
TaqI	TCGA	2 cut(s)	216, 291
TasI	AATT	2 cut(s)	68, 595
TauI	GCSGC	2 cut(s)	26, 672
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	2 cut(s)	285, 471
Tru9I	TTAA	2 cut(s)	285, 471
TscAI	CASTG	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	187
VneI	GTGCAC	1 cut(s)	108
VpaK11BI	GGWCC	1 cut(s)	693
XagI	CCTNNNNNAGG	2 cut(s)	90, 308
XapI	RAATTY	1 cut(s)	68
XceI	RCATGY	2 cut(s)	23, 38
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.