Rmu_sc0001788.1_g000023

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001788.1
OG0002284
Physical Location & Seq
Reverse (-)
93429 .. 93710
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001788.1_g000023.1.cds

Sequence Viewer

Length: 282 bp
ctggctgtcctgaagaaggagaaaattgagagagaagatattatcgctcagttgcaaaaggttcttaccaccaaagagaaagagttggcagacttccagtcggctatgcaggaagagatggccaagctggaggaggacgagagggagatggtgcacttggaggcggttgatgcttttaagaaatcaacagagttcaaggcacttctgaccaatgctggtaaacaaggtgcgaccgccaactttaaagagctcaaagatagcagctacttgaactttgactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.64

Weight (kDa)

4.98

Isoelectric Point (pI)

27.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 164, 234
AcoI YGGCCR 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 2 cut(s) 196, 271
AhdI GACNNNNNGTC 1 cut(s) 97
AluBI AGCT 3 cut(s) 127, 250, 264
AluI AGCT 3 cut(s) 127, 250, 264
Alw21I GWGCWC 2 cut(s) 156, 252
Alw44I GTGCAC 1 cut(s) 152
AoxI GGCC 1 cut(s) 120
ApaLI GTGCAC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 156
BalI TGGCCA 1 cut(s) 122
BanII GRGCYC 1 cut(s) 252
Bbv12I GWGCWC 2 cut(s) 156, 252
BbvI GCAGC 1 cut(s) 273
BccI CCATC 2 cut(s) 112, 142
BfaI CTAG 1 cut(s) 280
BisI GCNGC 1 cut(s) 262
BlsI GCNGC 1 cut(s) 263
BmeRI GACNNNNNGTC 1 cut(s) 97
BmsI GCATC 1 cut(s) 160
BpmI CTGGAG 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 97
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 62
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 1 cut(s) 273
Bsh1285I CGRYCG 1 cut(s) 234
BshFI GGCC 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 234
BsiHKAI GWGCWC 2 cut(s) 156, 252
BslI CCNNNNNNNGG 1 cut(s) 16
BsnI GGCC 1 cut(s) 122
Bsp1286I GDGCHC 2 cut(s) 156, 252
BspACI CCGC 2 cut(s) 164, 234
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 61
BsrI ACTGG 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 48
BstENI CCTNNNNNAGG 1 cut(s) 14
BstMCI CGRYCG 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstSLI GKGCMC 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 273
BsuRI GGCC 1 cut(s) 122
CviJI RGCY 6 cut(s) 5, 104, 122, 127, 250, 264
CviKI_1 RGCY 6 cut(s) 5, 104, 122, 127, 250, 264
DdeI CTNAG 1 cut(s) 48
DraI TTTAAA 1 cut(s) 244
DriI GACNNNNNGTC 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 108
Eam1105I GACNNNNNGTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 108
Ecl136II GAGCTC 1 cut(s) 250
Eco24I GRGCYC 1 cut(s) 252
Eco53kI GAGCTC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 250
EcoNI CCTNNNNNAGG 1 cut(s) 14
EcoT38I GRGCYC 1 cut(s) 252
FaiI YATR 1 cut(s) 107
Fnu4HI GCNGC 1 cut(s) 262
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 262
FspBI CTAG 1 cut(s) 280
GluI GCNGC 1 cut(s) 262
GsuI CTGGAG 1 cut(s) 149
HaeIII GGCC 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 154, 221
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 1 cut(s) 10
Hpy8I GTNNAC 2 cut(s) 154, 221
HpyAV CCTTC 1 cut(s) 10
HpyCH4V TGCA 3 cut(s) 55, 109, 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 48
LpnPI CCDG 5 cut(s) 23, 95, 110, 113, 201
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 1 cut(s) 160
MaeI CTAG 1 cut(s) 280
MboII GAAGA 3 cut(s) 25, 47, 125
MhlI GDGCHC 2 cut(s) 156, 252
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 1 cut(s) 24
MluNI TGGCCA 1 cut(s) 122
MnlI CCTC 4 cut(s) 124, 127, 135, 154
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
MseI TTAA 2 cut(s) 177, 243
Msp20I TGGCCA 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 263
Psp124BI GAGCTC 1 cut(s) 252
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 2 cut(s) 177, 243
SatI GCNGC 1 cut(s) 262
SduI GDGCHC 2 cut(s) 156, 252
SetI ASST 5 cut(s) 63, 129, 229, 252, 266
SfaNI GCATC 1 cut(s) 160
Sse9I AATT 1 cut(s) 24
SsiI CCGC 2 cut(s) 164, 234
SspMI CTAG 1 cut(s) 280
SstI GAGCTC 1 cut(s) 252
TasI AATT 1 cut(s) 24
Tru1I TTAA 2 cut(s) 177, 243
Tru9I TTAA 2 cut(s) 177, 243
TseI GCWGC 1 cut(s) 261
VneI GTGCAC 1 cut(s) 152
XagI CCTNNNNNAGG 1 cut(s) 14
XspI CTAG 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.