Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002235.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Forward (+)

223194 .. 223879

Gene Structure 686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002235.1_g000067.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

atgaggtggcaccgtgacttggctgagcaaagagagaaaaataaaatgaccgaggggaacattgccaagctcgatggtgccctccttgacgttaaggaaaagttcaagtgtgcggttgacaaaactatcgctgataccaccaccatctccaatctgaactccgagttagcaaccatgaagatggagaaaactgaaagggaggataccatctcccaactgcaagaggcacttaccgcaaaagaaaaggagttagtggacttccagtctgctaggcgggaggagttgacgaagatggcagaggatgagaaagcaaaggagcttaaggggaaagggtatttgaattttgacaagattgttgctgatcgagctccgtcaagtcccttggcaggtgaagatgttgaggagtccggggatgatgaatctttagaagctgggtcttctgatgatggtgaaggaagtggttcttcttgggaggatgacgttaggtcaaatggtaatcttgagactccaacgccgacaagtaaagttgagaagaaaaaggaactgttcgtcaagttgtttagaggcgtcgccgcagcgatcgtgctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

196

Amino Acids

21.72

Weight (kDa)

4.78

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	377
AccB1I	GGYRCC	2 cut(s)	9, 77
AciI	CCGC	4 cut(s)	113, 234, 274, 573
AcsI	RAATTY	1 cut(s)	340
AcyI	GRCGYC	1 cut(s)	567
AfiI	CCNNNNNNNGG	2 cut(s)	19, 386
AflII	CTTAAG	1 cut(s)	320
AgsI	TTSAA	2 cut(s)	106, 340
AhdI	GACNNNNNGTC	2 cut(s)	262, 484
AluBI	AGCT	4 cut(s)	70, 319, 368, 431
AluI	AGCT	4 cut(s)	70, 319, 368, 431
Alw21I	GWGCWC	1 cut(s)	370
Alw26I	GTCTC	1 cut(s)	497
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	1 cut(s)	340
Asp700I	GAANNNNTTC	1 cut(s)	460
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	2 cut(s)	401, 461
BaeGI	GKGCMC	1 cut(s)	82
BanI	GGYRCC	2 cut(s)	9, 77
BanII	GRGCYC	1 cut(s)	370
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	1 cut(s)	587
BccI	CCATC	6 cut(s)	68, 152, 175, 215, 286, 440
BciVI	GTATCC	1 cut(s)	196
BcnI	CCSGG	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	497
BfaI	CTAG	1 cut(s)	270
BfrI	CTTAAG	1 cut(s)	320
BfuAI	ACCTGC	1 cut(s)	377
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	2 cut(s)	573, 576
BlpI	GCTNAGC	1 cut(s)	24
BlsI	GCNGC	2 cut(s)	574, 577
Bme1390I	CCNGG	1 cut(s)	409
BmeRI	GACNNNNNGTC	2 cut(s)	262, 484
BmiI	GGNNCC	2 cut(s)	11, 79
BmrFI	CCNGG	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	429
Bpu1102I	GCTNAGC	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	521
BpuMI	CCSGG	1 cut(s)	409
BsaHI	GRCGYC	1 cut(s)	567
BsaJI	CCNNGG	3 cut(s)	51, 381, 408
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 386
Bse1I	ACTGG	1 cut(s)	262
Bse3DI	GCAATG	1 cut(s)	60
BseDI	CCNNGG	3 cut(s)	51, 381, 408
BseGI	GGATG	3 cut(s)	307, 418, 481
BseLI	CCNNNNNNNGG	2 cut(s)	19, 386
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	2 cut(s)	293, 416
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	587
BseYI	CCCAGC	1 cut(s)	431
Bsh1285I	CGRYCG	1 cut(s)	582
BshNI	GGYRCC	2 cut(s)	9, 77
BsiEI	CGRYCG	1 cut(s)	582
BsiHKAI	GWGCWC	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	363
BslI	CCNNNNNNNGG	2 cut(s)	19, 386
BsmAI	GTCTC	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	363
Bsp1286I	GDGCHC	2 cut(s)	82, 370
Bsp143I	GATC	2 cut(s)	361, 579
Bsp1720I	GCTNAGC	1 cut(s)	24
BspACI	CCGC	4 cut(s)	113, 234, 274, 573
BspCNI	CTCAG	1 cut(s)	16
BspLI	GGNNCC	2 cut(s)	11, 79
BspMI	ACCTGC	1 cut(s)	377
BspT107I	GGYRCC	2 cut(s)	9, 77
BspTI	CTTAAG	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	3 cut(s)	51, 381, 408
BssMI	GATC	2 cut(s)	361, 579
BssNI	GRCGYC	1 cut(s)	567
BssT1I	CCWWGG	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	14, 546
BstACI	GRCGYC	1 cut(s)	567
BstAFI	CTTAAG	1 cut(s)	320
BstDEI	CTNAG	1 cut(s)	24
BstF5I	GGATG	3 cut(s)	307, 418, 481
BstKTI	GATC	2 cut(s)	364, 582
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	2 cut(s)	361, 579
BstMCI	CGRYCG	1 cut(s)	582
BstMWI	GCNNNNNNNGC	2 cut(s)	233, 365
BstSCI	CCNGG	1 cut(s)	407
BstSLI	GKGCMC	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	587
BstV2I	GAAGAC	1 cut(s)	429
BstXI	CCANNNNNNTGG	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	196
BtsCI	GGATG	3 cut(s)	307, 418, 481
BveI	ACCTGC	1 cut(s)	377
CseI	GACGC	1 cut(s)	556
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	5 cut(s)	23, 70, 319, 368, 431
CviKI_1	RGCY	5 cut(s)	23, 70, 319, 368, 431
DdeI	CTNAG	1 cut(s)	24
DpnI	GATC	2 cut(s)	363, 581
DpnII	GATC	2 cut(s)	361, 579
DriI	GACNNNNNGTC	2 cut(s)	262, 484
Eam1105I	GACNNNNNGTC	2 cut(s)	262, 484
Ecl136II	GAGCTC	1 cut(s)	368
Eco130I	CCWWGG	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	370
Eco53kI	GAGCTC	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	368
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	370
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	1 cut(s)	178
FaiI	YATR	1 cut(s)	176
FalI	AAGNNNNNCTT	4 cut(s)	213, 245, 448, 480
FaqI	GGGAC	1 cut(s)	363
FatI	CATG	1 cut(s)	174
FauI	CCCGC	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	573, 576
FokI	GGATG	3 cut(s)	314, 425, 488
FriOI	GRGCYC	1 cut(s)	370
Fsp4HI	GCNGC	2 cut(s)	573, 576
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	2 cut(s)	573, 576
GsaI	CCCAGC	1 cut(s)	435
HapII	CCGG	1 cut(s)	408
HgaI	GACGC	1 cut(s)	556
Hin1I	GRCGYC	1 cut(s)	567
Hin1II	CATG	1 cut(s)	178
HincII	GTYRAC	2 cut(s)	118, 285
HindII	GTYRAC	2 cut(s)	118, 285
HinfI	GANTC	3 cut(s)	404, 419, 505
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	2 cut(s)	401, 461
Hpy166II	GTNNAC	3 cut(s)	118, 256, 285
Hpy188I	TCNGA	3 cut(s)	156, 163, 442
Hpy188III	TCNNGA	1 cut(s)	500
Hpy8I	GTNNAC	3 cut(s)	118, 256, 285
Hpy99I	CGWCG	1 cut(s)	572
HpyAV	CCTTC	1 cut(s)	446
HpyCH4III	ACNGT	2 cut(s)	14, 546
HpyCH4IV	ACGT	2 cut(s)	90, 480
HpyCH4V	TGCA	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	233, 365
HpyF3I	CTNAG	1 cut(s)	24
HpySE526I	ACGT	2 cut(s)	90, 480
Hsp92I	GRCGYC	1 cut(s)	567
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	361, 579
LmnI	GCTCC	2 cut(s)	316, 373
LpnPI	CCDG	4 cut(s)	275, 372, 417, 421
Lsp1109I	GCAGC	1 cut(s)	587
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	2 cut(s)	90, 480
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	2 cut(s)	363, 581
MboI	GATC	2 cut(s)	361, 579
MboII	GAAGA	6 cut(s)	190, 301, 404, 429, 456, 544
MhlI	GDGCHC	2 cut(s)	82, 370
MluCI	AATT	1 cut(s)	340
MlyI	GAGTC	2 cut(s)	413, 499
MmeI	TCCRAC	1 cut(s)	533
MnlI	CCTC	9 cut(s)	46, 92, 193, 217, 271, 292, 394, 466, 557
MroXI	GAANNNNTTC	1 cut(s)	460
MseI	TTAA	2 cut(s)	93, 321
MslI	CAYNNNNRTG	1 cut(s)	179
MspCI	CTTAAG	1 cut(s)	320
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	1 cut(s)	409
MwoI	GCNNNNNNNGC	2 cut(s)	233, 365
NciI	CCSGG	1 cut(s)	409
NdeII	GATC	2 cut(s)	361, 579
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	2 cut(s)	11, 79
NmuCI	GTSAC	1 cut(s)	14
PaqCI	CACCTGC	1 cut(s)	377
PdmI	GAANNNNTTC	1 cut(s)	460
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	574, 577
Ple19I	CGATCG	1 cut(s)	582
PleI	GAGTC	2 cut(s)	412, 499
PpsI	GAGTC	2 cut(s)	412, 499
Psp124BI	GAGCTC	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	431
PspN4I	GGNNCC	2 cut(s)	11, 79
PvuI	CGATCG	1 cut(s)	582
RseI	CAYNNNNRTG	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	370
SaqAI	TTAA	2 cut(s)	93, 321
SatI	GCNGC	2 cut(s)	573, 576
Sau3AI	GATC	2 cut(s)	361, 579
SchI	GAGTC	2 cut(s)	413, 499
ScrFI	CCNGG	1 cut(s)	409
SduI	GDGCHC	2 cut(s)	82, 370
SetI	ASST	9 cut(s)	8, 72, 93, 321, 370, 391, 433, 483, 488
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	2 cut(s)	320, 500
SmoI	CTYRAG	2 cut(s)	320, 500
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	4 cut(s)	113, 234, 274, 573
SspMI	CTAG	1 cut(s)	270
SstI	GAGCTC	1 cut(s)	370
StyD4I	CCNGG	1 cut(s)	407
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	14, 546
TaiI	ACGT	2 cut(s)	93, 483
TaqI	TCGA	2 cut(s)	72, 364
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	1 cut(s)	340
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	93, 321
Tru9I	TTAA	2 cut(s)	93, 321
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	191, 432
TspGWI	ACGGA	1 cut(s)	360
Vha464I	CTTAAG	1 cut(s)	320
XapI	RAATTY	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	460
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.