Rmu_sc0011141.1_g000008

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011141.1
OG0002284
Physical Location & Seq
Reverse (-)
23949 .. 25348
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011141.1_g000008.1.cds

Sequence Viewer

Length: 1122 bp
atggcaggagaggcgaagatttcggtggctccactacactcgaatcgcaccaatctgaagaagaagaagaagaagaagaagaagacagggggcaaaggaaagaatgtggcggaggagaatgaacaagagaacgaggaagatacggggtttgccctggacgtacccgctgacaagtcacaggagaaggcgacaactattgtcggggaggcagatattacggtgggcgaaggtgagagggagagaagaacaaaagctgaggccgacattggagggtcaaaacacgtcggttcaaaggttgttggtggtactggtggggatgttggcggtcaaccagtaggggggatccggcgtaccgcagaagaggaagattgtcacctctaccgttccttcaaatccctcgaagaagatgaagtaggattagtgcaaagtgcaactgccaatcaacaggcctttttgcacaaggtttgtgagcgccttagtttctgttgggaggcgagagttcctcagccagcggtgtcgtcaaagctggagaaatccttggatttgattttgaagggtgcccatgagctctaccttcaccagggttcgctggcagtcttgaagaatgagaaaattgagagagaatatactattgctcagttgcaagaggcgcctaccaccaaagagaaagagttggcagacttccagtcagctaggcaggaagagatggccaagctggcggaggacgagagggagatggtgcgcctggaggcggttgatgcttttaagaaatcaacagagttcgaggcacttctaacggatgctggtaaacaaggtgcggccgccaactctaaagagctcaaagatagcggctacttgaactttgacaagaaactacctaatcgagcccctccaaagtcgacgcctggcgaggatgtcgccgttgaggatgttgcgggatctgaagacggcggttcctcagaaaatggctcttctgatggtagcgaagagagtggttcttctgaagaagatggcacgcagtttgatggtaatcctgagactccgacgccgacaagtaaagctgagaagagaaaaatgggctctcgtcctcccgagggccgaggagaaacaacgccgtggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

373

Amino Acids

40.3

Weight (kDa)

5.11

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 557, 649
AccI GTMKAC 1 cut(s) 899
AclWI GGATC 3 cut(s) 337, 350, 946
AcoI YGGCCR 2 cut(s) 708, 819
AcuI CTGAAG 3 cut(s) 77, 963, 1023
AcyI GRCGYC 3 cut(s) 650, 902, 1046
AfaI GTAC 3 cut(s) 162, 307, 352
AfiI CCNNNNNNNGG 4 cut(s) 338, 580, 751, 1094
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 5 cut(s) 291, 391, 553, 601, 859
AhdI GACNNNNNGTC 1 cut(s) 685
AjiI CACGTC 1 cut(s) 283
AjnI CCWGG 4 cut(s) 153, 579, 744, 904
AluBI AGCT 7 cut(s) 254, 526, 568, 692, 715, 838, 1061
AluI AGCT 7 cut(s) 254, 526, 568, 692, 715, 838, 1061
Alw21I GWGCWC 2 cut(s) 570, 840
Alw26I GTCTC 1 cut(s) 1031
AlwI GGATC 3 cut(s) 337, 350, 946
Ama87I CYCGRG 1 cut(s) 1091
AoxI GGCC 5 cut(s) 258, 447, 708, 819, 1096
AspLEI GCGC 3 cut(s) 474, 652, 744
AspS9I GGNCC 1 cut(s) 1096
AsuHPI GGTGA 3 cut(s) 242, 365, 569
AvaI CYCGRG 1 cut(s) 1091
BaeGI GKGCMC 1 cut(s) 562
BalI TGGCCA 1 cut(s) 710
BamHI GGATCC 1 cut(s) 342
BanI GGYRCC 2 cut(s) 557, 649
BanII GRGCYC 4 cut(s) 570, 840, 889, 1082
BbsI GAAGAC 2 cut(s) 89, 951
Bbv12I GWGCWC 2 cut(s) 570, 840
BbvCI CCTCAGC 2 cut(s) 255, 504
BccI CCATC 5 cut(s) 700, 730, 971, 1004, 1019
BceAI ACGGC 3 cut(s) 905, 964, 1099
BciT130I CCWGG 4 cut(s) 155, 581, 746, 906
BcoDI GTCTC 1 cut(s) 1031
BfaI CTAG 1 cut(s) 693
BfoI RGCGCY 2 cut(s) 475, 653
BglI GCCNNNNNGGC 1 cut(s) 716
BisI GCNGC 3 cut(s) 819, 822, 850
BlsI GCNGC 3 cut(s) 820, 823, 851
Bme1390I CCNGG 4 cut(s) 155, 581, 746, 906
BmeRI GACNNNNNGTC 1 cut(s) 685
BmeT110I CYCGRG 1 cut(s) 1091
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 1096
BmiI GGNNCC 5 cut(s) 30, 344, 559, 651, 955
BmrFI CCNGG 4 cut(s) 155, 581, 746, 906
BmsI GCATC 2 cut(s) 748, 790
BpiI GAAGAC 2 cut(s) 89, 951
BplI GAGNNNNNCTC 2 cut(s) 487, 519
BpmI CTGGAG 2 cut(s) 548, 767
Bpu10I CCTNAGC 2 cut(s) 255, 504
BsaBI GATNNNNATC 1 cut(s) 1029
BsaHI GRCGYC 3 cut(s) 650, 902, 1046
BsaJI CCNNGG 6 cut(s) 153, 537, 580, 1092, 1099, 1115
Bsc4I CCNNNNNNNGG 4 cut(s) 338, 580, 751, 1094
Bse1I ACTGG 3 cut(s) 313, 332, 685
Bse8I GATNNNNATC 1 cut(s) 1029
BseBI CCWGG 4 cut(s) 155, 581, 746, 906
BseDI CCNNGG 6 cut(s) 153, 537, 580, 1092, 1099, 1115
BseGI GGATG 4 cut(s) 322, 805, 919, 934
BseJI GATNNNNATC 1 cut(s) 1029
BseLI CCNNNNNNNGG 4 cut(s) 338, 580, 751, 1094
BseMII CTCAG 6 cut(s) 246, 518, 650, 972, 1026, 1053
BseNI ACTGG 3 cut(s) 313, 332, 685
BseRI GAGGAG 2 cut(s) 128, 1116
BseSI GKGCMC 1 cut(s) 562
BseX3I CGGCCG 1 cut(s) 819
Bsh1285I CGRYCG 1 cut(s) 822
BshFI GGCC 5 cut(s) 260, 449, 710, 821, 1098
BshNI GGYRCC 2 cut(s) 557, 649
BsiEI CGRYCG 1 cut(s) 822
BsiHKAI GWGCWC 2 cut(s) 570, 840
BsiHKCI CYCGRG 1 cut(s) 1091
BsiSI CCGG 1 cut(s) 346
BslI CCNNNNNNNGG 4 cut(s) 338, 580, 751, 1094
BsmAI GTCTC 1 cut(s) 1031
BsnI GGCC 5 cut(s) 260, 449, 710, 821, 1098
BsoBI CYCGRG 1 cut(s) 1091
Bsp1286I GDGCHC 5 cut(s) 562, 570, 840, 889, 1082
Bsp143I GATC 2 cut(s) 342, 938
BspANI GGCC 5 cut(s) 260, 449, 710, 821, 1098
BspCNI CTCAG 6 cut(s) 247, 517, 649, 971, 1027, 1054
BspLI GGNNCC 5 cut(s) 30, 344, 559, 651, 955
BspPI GGATC 3 cut(s) 337, 350, 946
BspQI GCTCTTC 1 cut(s) 976
BspT107I GGYRCC 2 cut(s) 557, 649
BsrI ACTGG 3 cut(s) 313, 332, 685
BssECI CCNNGG 6 cut(s) 153, 537, 580, 1092, 1099, 1115
BssMI GATC 2 cut(s) 342, 938
BssNI GRCGYC 3 cut(s) 650, 902, 1046
BssT1I CCWWGG 1 cut(s) 537
Bst2UI CCWGG 4 cut(s) 155, 581, 746, 906
Bst4CI ACNGT 2 cut(s) 220, 383
Bst6I CTCTTC 5 cut(s) 354, 696, 976, 981, 1061
BstACI GRCGYC 3 cut(s) 650, 902, 1046
BstC8I GCNNGC 4 cut(s) 510, 591, 717, 1016
BstDEI CTNAG 7 cut(s) 255, 476, 504, 636, 958, 1035, 1062
BstDSI CCRYGG 1 cut(s) 1115
BstENI CCTNNNNNAGG 1 cut(s) 578
BstF5I GGATG 4 cut(s) 322, 805, 919, 934
BstH2I RGCGCY 2 cut(s) 475, 653
BstHHI GCGC 3 cut(s) 474, 652, 744
BstKTI GATC 2 cut(s) 345, 941
BstMAI GTCTC 1 cut(s) 1031
BstMBI GATC 2 cut(s) 342, 938
BstMCI CGRYCG 1 cut(s) 822
BstMWI GCNNNNNNNGC 4 cut(s) 11, 649, 716, 758
BstNI CCWGG 4 cut(s) 155, 581, 746, 906
BstSCI CCNGG 4 cut(s) 153, 579, 744, 904
BstSLI GKGCMC 1 cut(s) 562
BstV2I GAAGAC 2 cut(s) 89, 951
BstX2I RGATCY 2 cut(s) 342, 938
BstYI RGATCY 2 cut(s) 342, 938
BstZI CGGCCG 1 cut(s) 819
BsuRI GGCC 5 cut(s) 260, 449, 710, 821, 1098
BtgI CCRYGG 1 cut(s) 1115
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 4 cut(s) 322, 805, 919, 934
Cac8I GCNNGC 4 cut(s) 510, 591, 717, 1016
CciNI GCGGCCGC 1 cut(s) 819
CfoI GCGC 3 cut(s) 474, 652, 744
Cfr13I GGNCC 1 cut(s) 1096
CseI GACGC 2 cut(s) 910, 1054
Csp6I GTAC 3 cut(s) 161, 306, 351
CviAII CATG 1 cut(s) 563
CviQI GTAC 3 cut(s) 161, 306, 351
DdeI CTNAG 7 cut(s) 255, 476, 504, 636, 958, 1035, 1062
DinI GGCGCC 1 cut(s) 651
DpnI GATC 2 cut(s) 344, 940
DpnII GATC 2 cut(s) 342, 938
DriI GACNNNNNGTC 1 cut(s) 685
EaeI YGGCCR 2 cut(s) 708, 819
EagI CGGCCG 1 cut(s) 819
Eam1104I CTCTTC 5 cut(s) 354, 696, 976, 981, 1061
Eam1105I GACNNNNNGTC 1 cut(s) 685
EarI CTCTTC 5 cut(s) 354, 696, 976, 981, 1061
EciI GGCGGA 2 cut(s) 125, 734
Ecl136II GAGCTC 2 cut(s) 568, 838
EclXI CGGCCG 1 cut(s) 819
Eco130I CCWWGG 1 cut(s) 537
Eco147I AGGCCT 1 cut(s) 449
Eco24I GRGCYC 4 cut(s) 570, 840, 889, 1082
Eco52I CGGCCG 1 cut(s) 819
Eco53kI GAGCTC 2 cut(s) 568, 838
Eco57I CTGAAG 3 cut(s) 77, 963, 1023
Eco88I CYCGRG 1 cut(s) 1091
EcoICRI GAGCTC 2 cut(s) 568, 838
EcoNI CCTNNNNNAGG 1 cut(s) 578
EcoRII CCWGG 4 cut(s) 153, 579, 744, 904
EcoT14I CCWWGG 1 cut(s) 537
EcoT38I GRGCYC 4 cut(s) 570, 840, 889, 1082
EgeI GGCGCC 1 cut(s) 651
EheI GGCGCC 1 cut(s) 651
ErhI CCWWGG 1 cut(s) 537
FaeI CATG 1 cut(s) 566
FaiI YATR 2 cut(s) 564, 627
FatI CATG 1 cut(s) 562
FauI CCCGC 2 cut(s) 172, 928
FblI GTMKAC 1 cut(s) 899
Fnu4HI GCNGC 3 cut(s) 819, 822, 850
FokI GGATG 4 cut(s) 329, 812, 926, 941
FriOI GRGCYC 4 cut(s) 570, 840, 889, 1082
Fsp4HI GCNGC 3 cut(s) 819, 822, 850
FspBI CTAG 1 cut(s) 693
GlaI GCGC 3 cut(s) 473, 651, 743
GluI GCNGC 3 cut(s) 819, 822, 850
GsuI CTGGAG 2 cut(s) 548, 767
HaeII RGCGCY 2 cut(s) 475, 653
HaeIII GGCC 5 cut(s) 260, 449, 710, 821, 1098
HapII CCGG 1 cut(s) 346
HgaI GACGC 2 cut(s) 910, 1054
HhaI GCGC 3 cut(s) 474, 652, 744
Hin1I GRCGYC 3 cut(s) 650, 902, 1046
Hin1II CATG 1 cut(s) 566
Hin6I GCGC 3 cut(s) 472, 650, 742
HinP1I GCGC 3 cut(s) 472, 650, 742
HincII GTYRAC 2 cut(s) 329, 900
HindII GTYRAC 2 cut(s) 329, 900
HinfI GANTC 2 cut(s) 43, 1039
HpaII CCGG 1 cut(s) 346
HphI GGTGA 3 cut(s) 242, 365, 569
Hpy166II GTNNAC 3 cut(s) 329, 809, 900
Hpy188I TCNGA 6 cut(s) 57, 943, 961, 976, 1003, 1044
Hpy188III TCNNGA 3 cut(s) 598, 1034, 1091
Hpy8I GTNNAC 3 cut(s) 329, 809, 900
Hpy99I CGWCG 3 cut(s) 287, 904, 1048
HpyAV CCTTC 5 cut(s) 178, 221, 397, 547, 584
HpyCH4III ACNGT 2 cut(s) 220, 383
HpyCH4IV ACGT 2 cut(s) 159, 282
HpyCH4V TGCA 4 cut(s) 424, 431, 457, 643
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 649, 716, 758
HpyF3I CTNAG 7 cut(s) 255, 476, 504, 636, 958, 1035, 1062
HpySE526I ACGT 2 cut(s) 159, 282
Hsp92I GRCGYC 3 cut(s) 650, 902, 1046
Hsp92II CATG 1 cut(s) 566
HspAI GCGC 3 cut(s) 472, 650, 742
KasI GGCGCC 1 cut(s) 649
Kzo9I GATC 2 cut(s) 342, 938
LguI GCTCTTC 1 cut(s) 976
LmnI GCTCC 1 cut(s) 34
LweI GCATC 2 cut(s) 748, 790
MaeI CTAG 1 cut(s) 693
MaeII ACGT 2 cut(s) 159, 282
MaeIII GTNAC 2 cut(s) 174, 371
MalI GATC 2 cut(s) 344, 940
MboI GATC 2 cut(s) 342, 938
MflI RGATCY 2 cut(s) 342, 938
MhlI GDGCHC 5 cut(s) 562, 570, 840, 889, 1082
MlsI TGGCCA 1 cut(s) 710
MluCI AATT 1 cut(s) 612
MluNI TGGCCA 1 cut(s) 710
Mly113I GGCGCC 1 cut(s) 650
MlyI GAGTC 1 cut(s) 1033
MmeI TCCRAC 1 cut(s) 1067
Mox20I TGGCCA 1 cut(s) 710
MscI TGGCCA 1 cut(s) 710
MseI TTAA 1 cut(s) 765
Msp20I TGGCCA 1 cut(s) 710
MspA1I CMGCKG 2 cut(s) 167, 512
MspI CCGG 1 cut(s) 346
MspR9I CCNGG 4 cut(s) 155, 581, 746, 906
MvaI CCWGG 4 cut(s) 155, 581, 746, 906
MwoI GCNNNNNNNGC 4 cut(s) 11, 649, 716, 758
NarI GGCGCC 1 cut(s) 650
NdeII GATC 2 cut(s) 342, 938
NlaIII CATG 1 cut(s) 566
NlaIV GGNNCC 5 cut(s) 30, 344, 559, 651, 955
NmuCI GTSAC 2 cut(s) 174, 371
NotI GCGGCCGC 1 cut(s) 819
PceI AGGCCT 1 cut(s) 449
PciSI GCTCTTC 1 cut(s) 976
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 3 cut(s) 820, 823, 851
PleI GAGTC 1 cut(s) 1033
PluTI GGCGCC 1 cut(s) 653
PpsI GAGTC 1 cut(s) 1033
Psp124BI GAGCTC 2 cut(s) 570, 840
Psp6I CCWGG 4 cut(s) 153, 579, 744, 904
PspGI CCWGG 4 cut(s) 153, 579, 744, 904
PspN4I GGNNCC 5 cut(s) 30, 344, 559, 651, 955
PspPI GGNCC 1 cut(s) 1096
PsuI RGATCY 2 cut(s) 342, 938
RsaI GTAC 3 cut(s) 162, 307, 352
RsaNI GTAC 3 cut(s) 161, 306, 351
SacI GAGCTC 2 cut(s) 570, 840
SalI GTCGAC 1 cut(s) 898
SapI GCTCTTC 1 cut(s) 976
SaqAI TTAA 1 cut(s) 765
SatI GCNGC 3 cut(s) 819, 822, 850
Sau3AI GATC 2 cut(s) 342, 938
Sau96I GGNCC 1 cut(s) 1096
SchI GAGTC 1 cut(s) 1033
ScrFI CCNGG 4 cut(s) 155, 581, 746, 906
SduI GDGCHC 5 cut(s) 562, 570, 840, 889, 1082
SfaNI GCATC 2 cut(s) 748, 790
SfoI GGCGCC 1 cut(s) 651
Sse9I AATT 1 cut(s) 612
SseBI AGGCCT 1 cut(s) 449
SspDI GGCGCC 1 cut(s) 649
SspMI CTAG 1 cut(s) 693
SstI GAGCTC 2 cut(s) 570, 840
StuI AGGCCT 1 cut(s) 449
StyD4I CCNGG 4 cut(s) 153, 579, 744, 904
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 2 cut(s) 220, 383
TaiI ACGT 2 cut(s) 162, 285
TaqI TCGA 5 cut(s) 41, 399, 783, 883, 899
TasI AATT 1 cut(s) 612
TauI GCSGC 3 cut(s) 821, 824, 852
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 1 cut(s) 765
Tru9I TTAA 1 cut(s) 765
TseFI GTSAC 2 cut(s) 174, 371
Tsp45I GTSAC 2 cut(s) 174, 371
TspDTI ATGAA 2 cut(s) 135, 423
TspGWI ACGGA 1 cut(s) 812
XagI CCTNNNNNAGG 1 cut(s) 578
XmiI GTMKAC 1 cut(s) 899
XspI CTAG 1 cut(s) 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.