Rroxscaffold_2G00121950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002284
Physical Location & Seq
Forward (+)
54772804 .. 54777928
5125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00121950.1

Sequence Viewer

Length: 303 bp
ATGAATTTATCACGGTTTGCGAGAGAACGGTTGAATTGCTCCAAGGGGAGAATCCTAGCTAGCCCACCACTCATAAGGCATAATCATACCAACCAGCGCTATGATGGTGGTAACAACGAGGACGAAGCGAAGACTATGGAAGCTCCCTTGTATTCTAATCGCTCAAAGTTGAAGAAGAAGAAAATTGGTGGCAAAGAGAAAGATGTGGCGGATGAGGCTAAGCAAGAAAATGAGGAGACCGGGTTTGTCTTGGAAGTTCCTACATGCAAGCCTCGGGGAGAAGATCGCAAGCGTGGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.47

Weight (kDa)

9.51

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 209
AcsI RAATTY 1 cut(s) 4
AfeI AGCGCT 1 cut(s) 98
AgsI TTSAA 2 cut(s) 34, 172
AluBI AGCT 2 cut(s) 59, 143
AluI AGCT 2 cut(s) 59, 143
Alw26I GTCTC 1 cut(s) 230
Ama87I CYCGRG 1 cut(s) 273
Aor51HI AGCGCT 1 cut(s) 98
ApoI RAATTY 1 cut(s) 4
AspLEI GCGC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 241
AsuNHI GCTAGC 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 137
BccI CCATC 1 cut(s) 98
BcnI CCSGG 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 2 cut(s) 56, 60
BfoI RGCGCY 1 cut(s) 100
BlpI GCTNAGC 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 241
BmtI GCTAGC 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 137
Bpu1102I GCTNAGC 1 cut(s) 219
BpuMI CCSGG 1 cut(s) 241
BsaI GGTCTC 1 cut(s) 230
BsaJI CCNNGG 2 cut(s) 42, 272
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
BseDI CCNNGG 2 cut(s) 42, 272
BseGI GGATG 1 cut(s) 217
BseRI GAGGAG 1 cut(s) 248
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 230
Bso31I GGTCTC 1 cut(s) 230
BsoBI CYCGRG 1 cut(s) 273
Bsp143I GATC 1 cut(s) 283
Bsp1720I GCTNAGC 1 cut(s) 219
BspACI CCGC 1 cut(s) 209
BspOI GCTAGC 1 cut(s) 63
BspTNI GGTCTC 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 42, 272
BssMI GATC 1 cut(s) 283
BssT1I CCWWGG 1 cut(s) 42
Bst4CI ACNGT 2 cut(s) 15, 30
BstC8I GCNNGC 3 cut(s) 61, 269, 290
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 217
BstH2I RGCGCY 1 cut(s) 100
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 1 cut(s) 286
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNSI RCATGY 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 239
BstV2I GAAGAC 1 cut(s) 137
BtsCI GGATG 1 cut(s) 217
Cac8I GCNNGC 3 cut(s) 61, 269, 290
CfoI GCGC 1 cut(s) 99
CviAII CATG 1 cut(s) 264
CviJI RGCY 5 cut(s) 59, 63, 143, 218, 271
CviKI_1 RGCY 5 cut(s) 59, 63, 143, 218, 271
DdeI CTNAG 1 cut(s) 219
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
EciI GGCGGA 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 230
Eco47III AGCGCT 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 1 cut(s) 267
FaiI YATR 6 cut(s) 74, 81, 87, 102, 137, 265
FatI CATG 1 cut(s) 263
FokI GGATG 1 cut(s) 224
FspBI CTAG 2 cut(s) 56, 60
GlaI GCGC 1 cut(s) 98
HaeII RGCGCY 1 cut(s) 100
HapII CCGG 1 cut(s) 240
HhaI GCGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 267
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 1 cut(s) 51
HpaII CCGG 1 cut(s) 240
HpyCH4III ACNGT 2 cut(s) 15, 30
HpyCH4V TGCA 1 cut(s) 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 1 cut(s) 267
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 2 cut(s) 44, 148
LpnPI CCDG 2 cut(s) 107, 253
MaeI CTAG 2 cut(s) 56, 60
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 5 cut(s) 142, 184, 187, 190, 293
MluCI AATT 3 cut(s) 4, 34, 183
MnlI CCTC 4 cut(s) 112, 208, 226, 282
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 241
MwoI GCNNNNNNNGC 1 cut(s) 215
NciI CCSGG 1 cut(s) 241
NdeII GATC 1 cut(s) 283
NheI GCTAGC 1 cut(s) 59
NlaIII CATG 1 cut(s) 267
NspI RCATGY 1 cut(s) 267
PfeI GAWTC 1 cut(s) 51
Sau3AI GATC 1 cut(s) 283
ScrFI CCNGG 1 cut(s) 241
SetI ASST 2 cut(s) 61, 145
Sse9I AATT 3 cut(s) 4, 34, 183
SsiI CCGC 1 cut(s) 209
SspMI CTAG 2 cut(s) 56, 60
StyD4I CCNGG 1 cut(s) 239
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 2 cut(s) 15, 30
TasI AATT 3 cut(s) 4, 34, 183
TfiI GAWTC 1 cut(s) 51
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 267
XcmI CCANNNNNNNNNTGG 1 cut(s) 101
XspI CTAG 2 cut(s) 56, 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.