Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002281.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Reverse (-)

51791 .. 52824

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002281.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atggaggagagtgaacaagagaacgaggaagatacggggtttgccctggaggtacccgctgataagtcacaggagaagctgacaactgttgtcggggaggcagacatgacggtgggcgaaggtgagagggagagaagaacaaaagatggggccgacattggaaggtcaaaacatgtcggttcaatggttgttggcggtcaatcaataagtggttccggcgtaccacagaagaggaagattatcacctttatcgttccttcagatccctcgaagaagatgaaggttggagagaagcatgtggcagaaaagcatgttgcggctggccatagagaggtcgaaggaaaatttgtctcagacaaccctgtcgtaagattagtgcaaagtgcacccgccaatcaacaggcctttctgcacaagatctgtgagcaccttggtttctgttgtgaggcgagaagggagaagaataagtccactgctggggacattgccaagcttgacggtgctctcctcgacgtcaaagaaaagttcaagtgtgctatggataagaccatcaccgataccgccactattgccaaccttaatgccgagctggcagtcttgaagaaggagaaaactgagagagaagataccatcgctcagttacaagaggcgtttaccgccaaagagaaagagttggcggacttccagtcagctaggcaggaagagatgaccaagctagagaaggacgagagggagacggtgcgcctggaggcggttggtgcttttaagaaatcaacaaagttcaaggcacttctgtcggatgctggtaaacaaggtgcagccgccaactttaaagagctcaaagatagcgactacttgaattttgacaagatattagctgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

32.33

Weight (kDa)

5.72

Isoelectric Point (pI)

30.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
AatII	GACGTC	1 cut(s)	516
Acc65I	GGTACC	1 cut(s)	52
AccB1I	GGYRCC	1 cut(s)	52
AciI	CCGC	9 cut(s)	57, 195, 317, 390, 561, 657, 677, 752, 822
AclWI	GGATC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	2 cut(s)	344, 859
AcuI	CTGAAG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	513
AfaI	GTAC	2 cut(s)	54, 222
AfiI	CCNNNNNNNGG	3 cut(s)	331, 477, 751
AflIII	ACRYGT	1 cut(s)	172
AgsI	TTSAA	5 cut(s)	183, 529, 601, 784, 859
AhdI	GACNNNNNGTC	1 cut(s)	685
AjnI	CCWGG	2 cut(s)	45, 744
AluBI	AGCT	7 cut(s)	79, 493, 589, 692, 715, 838, 878
AluI	AGCT	7 cut(s)	79, 493, 589, 692, 715, 838, 878
Alw21I	GWGCWC	4 cut(s)	388, 429, 505, 840
Alw26I	GTCTC	2 cut(s)	355, 728
Alw44I	GTGCAC	1 cut(s)	384
AlwI	GGATC	1 cut(s)	257
AoxI	GGCC	3 cut(s)	150, 322, 402
ApaLI	GTGCAC	1 cut(s)	384
ApeKI	GCWGC	1 cut(s)	818
ApoI	RAATTY	2 cut(s)	344, 859
Asp718I	GGTACC	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	744
AspS9I	GGNCC	1 cut(s)	150
AsuHPI	GGTGA	3 cut(s)	134, 235, 544
BaeGI	GKGCMC	1 cut(s)	388
BalI	TGGCCA	1 cut(s)	324
BanI	GGYRCC	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	840
Bbv12I	GWGCWC	4 cut(s)	388, 429, 505, 840
BbvI	GCAGC	1 cut(s)	830
BccI	CCATC	3 cut(s)	140, 557, 638
BcgI	CGANNNNNNTGC	2 cut(s)	777, 811
BciT130I	CCWGG	2 cut(s)	47, 746
BcoDI	GTCTC	2 cut(s)	355, 728
BfaI	CTAG	2 cut(s)	693, 716
BglI	GCCNNNNNGGC	1 cut(s)	590
BglII	AGATCT	1 cut(s)	417
BisI	GCNGC	3 cut(s)	318, 819, 822
BlsI	GCNGC	3 cut(s)	319, 820, 823
Bme1390I	CCNGG	2 cut(s)	47, 746
BmeRI	GACNNNNNGTC	1 cut(s)	685
BmgT120I	GGNCC	1 cut(s)	150
BmiI	GGNNCC	3 cut(s)	54, 151, 214
BmrFI	CCNGG	2 cut(s)	47, 746
BmsI	GCATC	1 cut(s)	790
BpmI	CTGGAG	2 cut(s)	68, 767
BsaHI	GRCGYC	1 cut(s)	513
BsaJI	CCNNGG	2 cut(s)	45, 430
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 477, 751
Bse1I	ACTGG	1 cut(s)	685
Bse3DI	GCAATG	1 cut(s)	483
BseBI	CCWGG	2 cut(s)	47, 746
BseDI	CCNNGG	2 cut(s)	45, 430
BseGI	GGATG	1 cut(s)	805
BseLI	CCNNNNNNNGG	3 cut(s)	331, 477, 751
BseMI	GCAATG	1 cut(s)	483
BseMII	CTCAG	3 cut(s)	366, 606, 650
BseNI	ACTGG	1 cut(s)	685
BseRI	GAGGAG	2 cut(s)	20, 497
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	830
BseYI	CCCAGC	1 cut(s)	476
BsgI	GTGCAG	2 cut(s)	395, 837
BshFI	GGCC	3 cut(s)	152, 324, 404
BshNI	GGYRCC	1 cut(s)	52
BsiHKAI	GWGCWC	4 cut(s)	388, 429, 505, 840
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	494
BslI	CCNNNNNNNGG	3 cut(s)	331, 477, 751
BsmAI	GTCTC	2 cut(s)	355, 728
BsmBI	CGTCTC	1 cut(s)	728
BsmFI	GGGAC	1 cut(s)	494
BsnI	GGCC	3 cut(s)	152, 324, 404
Bsp1286I	GDGCHC	4 cut(s)	388, 429, 505, 840
Bsp143I	GATC	2 cut(s)	262, 417
BspACI	CCGC	9 cut(s)	57, 195, 317, 390, 561, 657, 677, 752, 822
BspANI	GGCC	3 cut(s)	152, 324, 404
BspCNI	CTCAG	3 cut(s)	365, 607, 649
BspLI	GGNNCC	3 cut(s)	54, 151, 214
BspPI	GGATC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	685
BssECI	CCNNGG	2 cut(s)	45, 430
BssMI	GATC	2 cut(s)	262, 417
BssNI	GRCGYC	1 cut(s)	513
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	2 cut(s)	47, 746
Bst4CI	ACNGT	4 cut(s)	88, 112, 500, 739
Bst6I	CTCTTC	2 cut(s)	224, 696
BstACI	GRCGYC	1 cut(s)	513
BstC8I	GCNNGC	2 cut(s)	322, 591
BstDEI	CTNAG	3 cut(s)	352, 615, 636
BstF5I	GGATG	1 cut(s)	805
BstHHI	GCGC	1 cut(s)	744
BstKTI	GATC	2 cut(s)	265, 420
BstMAI	GTCTC	2 cut(s)	355, 728
BstMBI	GATC	2 cut(s)	262, 417
BstMWI	GCNNNNNNNGC	4 cut(s)	569, 590, 656, 758
BstNI	CCWGG	2 cut(s)	47, 746
BstNSI	RCATGY	3 cut(s)	176, 299, 314
BstSCI	CCNGG	2 cut(s)	45, 744
BstSLI	GKGCMC	1 cut(s)	388
BstV1I	GCAGC	1 cut(s)	830
BstX2I	RGATCY	2 cut(s)	262, 417
BstYI	RGATCY	2 cut(s)	262, 417
BsuRI	GGCC	3 cut(s)	152, 324, 404
BtgZI	GCGATG	1 cut(s)	616
BtsCI	GGATG	1 cut(s)	805
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	2 cut(s)	322, 591
CfoI	GCGC	1 cut(s)	744
Cfr13I	GGNCC	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	53, 221
CviAII	CATG	4 cut(s)	106, 173, 296, 311
CviQI	GTAC	2 cut(s)	53, 221
DdeI	CTNAG	3 cut(s)	352, 615, 636
DpnI	GATC	2 cut(s)	264, 419
DpnII	GATC	2 cut(s)	262, 417
DraI	TTTAAA	1 cut(s)	832
DrdI	GACNNNNNNGTC	1 cut(s)	362
DriI	GACNNNNNGTC	1 cut(s)	685
DseDI	GACNNNNNNGTC	1 cut(s)	362
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	2 cut(s)	224, 696
Eam1105I	GACNNNNNGTC	1 cut(s)	685
EarI	CTCTTC	2 cut(s)	224, 696
EciI	GGCGGA	1 cut(s)	692
Ecl136II	GAGCTC	1 cut(s)	838
Eco130I	CCWWGG	1 cut(s)	430
Eco147I	AGGCCT	1 cut(s)	404
Eco24I	GRGCYC	1 cut(s)	840
Eco53kI	GAGCTC	1 cut(s)	838
Eco57I	CTGAAG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	838
EcoRII	CCWGG	2 cut(s)	45, 744
EcoT14I	CCWWGG	1 cut(s)	430
EcoT38I	GRGCYC	1 cut(s)	840
ErhI	CCWWGG	1 cut(s)	430
Esp3I	CGTCTC	1 cut(s)	728
FaeI	CATG	4 cut(s)	109, 176, 299, 314
FaiI	YATR	6 cut(s)	107, 174, 297, 312, 327, 539
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	4 cut(s)	105, 172, 295, 310
FauI	CCCGC	2 cut(s)	64, 397
Fnu4HI	GCNGC	3 cut(s)	318, 819, 822
FokI	GGATG	1 cut(s)	812
FriOI	GRGCYC	1 cut(s)	840
Fsp4HI	GCNGC	3 cut(s)	318, 819, 822
FspBI	CTAG	2 cut(s)	693, 716
GlaI	GCGC	1 cut(s)	743
GluI	GCNGC	3 cut(s)	318, 819, 822
GsaI	CCCAGC	1 cut(s)	480
GsuI	CTGGAG	2 cut(s)	68, 767
HaeIII	GGCC	3 cut(s)	152, 324, 404
HapII	CCGG	1 cut(s)	216
HhaI	GCGC	1 cut(s)	744
Hin1I	GRCGYC	1 cut(s)	513
Hin1II	CATG	4 cut(s)	109, 176, 299, 314
Hin6I	GCGC	1 cut(s)	742
HinP1I	GCGC	1 cut(s)	742
HindIII	AAGCTT	1 cut(s)	491
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	3 cut(s)	134, 235, 544
Hpy166II	GTNNAC	5 cut(s)	14, 386, 471, 654, 809
Hpy188I	TCNGA	3 cut(s)	262, 355, 799
Hpy188III	TCNNGA	1 cut(s)	598
Hpy8I	GTNNAC	5 cut(s)	14, 386, 471, 654, 809
Hpy99I	CGWCG	1 cut(s)	515
HpyAV	CCTTC	8 cut(s)	113, 156, 267, 274, 332, 447, 598, 715
HpyCH4III	ACNGT	4 cut(s)	88, 112, 500, 739
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	4 cut(s)	379, 386, 412, 818
HpyF10VI	GCNNNNNNNGC	4 cut(s)	569, 590, 656, 758
HpyF3I	CTNAG	3 cut(s)	352, 615, 636
HpySE526I	ACGT	1 cut(s)	513
Hsp92I	GRCGYC	1 cut(s)	513
Hsp92II	CATG	4 cut(s)	109, 176, 299, 314
HspAI	GCGC	1 cut(s)	742
KpnI	GGTACC	1 cut(s)	56
Kzo9I	GATC	2 cut(s)	262, 417
Lsp1109I	GCAGC	1 cut(s)	830
LweI	GCATC	1 cut(s)	790
MaeI	CTAG	2 cut(s)	693, 716
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	2 cut(s)	66, 639
MalI	GATC	2 cut(s)	264, 419
MboI	GATC	2 cut(s)	262, 417
MflI	RGATCY	2 cut(s)	262, 417
MhlI	GDGCHC	4 cut(s)	388, 429, 505, 840
MlsI	TGGCCA	1 cut(s)	324
MluCI	AATT	2 cut(s)	344, 859
MluNI	TGGCCA	1 cut(s)	324
MmeI	TCCRAC	2 cut(s)	265, 777
Mox20I	TGGCCA	1 cut(s)	324
MscI	TGGCCA	1 cut(s)	324
MseI	TTAA	3 cut(s)	579, 765, 831
MslI	CAYNNNNRTG	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	2 cut(s)	47, 746
MvaI	CCWGG	2 cut(s)	47, 746
MwoI	GCNNNNNNNGC	4 cut(s)	569, 590, 656, 758
NdeII	GATC	2 cut(s)	262, 417
NlaIII	CATG	4 cut(s)	109, 176, 299, 314
NlaIV	GGNNCC	3 cut(s)	54, 151, 214
NmeAIII	GCCGAG	1 cut(s)	610
NmuCI	GTSAC	1 cut(s)	66
NspI	RCATGY	3 cut(s)	176, 299, 314
PceI	AGGCCT	1 cut(s)	404
PciI	ACATGT	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	319, 820, 823
PscI	ACATGT	1 cut(s)	172
Psp124BI	GAGCTC	1 cut(s)	840
Psp6I	CCWGG	2 cut(s)	45, 744
PspFI	CCCAGC	1 cut(s)	476
PspGI	CCWGG	2 cut(s)	45, 744
PspN4I	GGNNCC	3 cut(s)	54, 151, 214
PspPI	GGNCC	1 cut(s)	150
PsuI	RGATCY	2 cut(s)	262, 417
RsaI	GTAC	2 cut(s)	54, 222
RsaNI	GTAC	2 cut(s)	53, 221
RseI	CAYNNNNRTG	1 cut(s)	110
SacI	GAGCTC	1 cut(s)	840
SaqAI	TTAA	3 cut(s)	579, 765, 831
SatI	GCNGC	3 cut(s)	318, 819, 822
Sau3AI	GATC	2 cut(s)	262, 417
Sau96I	GGNCC	1 cut(s)	150
ScrFI	CCNGG	2 cut(s)	47, 746
SduI	GDGCHC	4 cut(s)	388, 429, 505, 840
SfaNI	GCATC	1 cut(s)	790
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	344, 859
SseBI	AGGCCT	1 cut(s)	404
SsiI	CCGC	9 cut(s)	57, 195, 317, 390, 561, 657, 677, 752, 822
SspMI	CTAG	2 cut(s)	693, 716
SstI	GAGCTC	1 cut(s)	840
StuI	AGGCCT	1 cut(s)	404
StyD4I	CCNGG	2 cut(s)	45, 744
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	4 cut(s)	88, 112, 500, 739
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	3 cut(s)	269, 336, 510
TasI	AATT	2 cut(s)	344, 859
TauI	GCSGC	2 cut(s)	320, 824
Tru1I	TTAA	3 cut(s)	579, 765, 831
Tru9I	TTAA	3 cut(s)	579, 765, 831
TscAI	CASTG	1 cut(s)	478
TseFI	GTSAC	1 cut(s)	66
TseI	GCWGC	1 cut(s)	818
Tsp45I	GTSAC	1 cut(s)	66
TspDTI	ATGAA	1 cut(s)	293
TspRI	CASTG	1 cut(s)	478
VneI	GTGCAC	1 cut(s)	384
XapI	RAATTY	2 cut(s)	344, 859
XceI	RCATGY	3 cut(s)	176, 299, 314
XspI	CTAG	2 cut(s)	693, 716
ZraI	GACGTC	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.