Rmu_sc0011198.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011198.1
OG0002284
Physical Location & Seq
Forward (+)
28442 .. 29679
1238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011198.1_g000009.1.cds

Sequence Viewer

Length: 1194 bp
atgatggccgatattggcgggattaaggagcacgtcaattttatgattgacgaggcggccaaagtgcggaaacagactgttgatccgcaaacgagggagataacgacggcggaagaagtccagatcttgaaggatccgctacactcgaaccgcggtaatctgaagaagaagaaagcagacagcaaaggaaaaaatgtggcgggagagagtgagcaagaggatgaggaggatacggggtttgccttggaggtacccgctgatacgtcacaggagaaggtgacaactgttgtcggggaagcaggtataacggagggtgaaggtgagagggagaggaggatgaaagcaagggccgacatcagggggtcaaaacatgtcggtccaaggactgttggtggtaccggtagggatgaaacagcaggggggtctggcataccgcagaagaggaagattgtcgcttctacccttccgtcagatgcctccaagaagatgaaggttggagagaggaatgtggcggagaaacatgttgcgttggccgagagggagaagaataaagccactactaaggacattgctaaacttaacggtgcgcttctcgacgtcagagagaagttcaagcgtgccgtggataagaccatcgccgatactgccacgattgccaaccttaatgccgagttggcggtcctgaagaaggagaaagctgagagagaagaaactatcgcccagttgcaagaggctcttaccatcaaagagaaagagttggcagatttccagtcggctaggcaggagaaaatggctaaattggcagaggatgaaaaagagatggtgcgtctagaggcgattaacgctttcaagaattcagcagagttcagggcactcctaacggatgctggtaaacaaggtgcggcccccaactttaaggaactcaaagatagcgactatttgaattttgacaagattttagccgatcgagtcgtcgttgaagatgttgcggaatctaaagatggcggctcctcagaaagtggctcctctgatggtagcgaagaaagtggttcgtctggacaagaaggcacgaggtctgatggcaatcctgagacttcgacgccgacaagtaaagctgctaagaaaaagatggcttctcgttcgcctgtggagaaacgtcgcggtggtgatcgtgccttggggtccgcctcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

397

Amino Acids

42.85

Weight (kDa)

6.07

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 600
Acc36I ACCTGC 1 cut(s) 290
Acc65I GGTACC 2 cut(s) 250, 395
AccB1I GGYRCC 2 cut(s) 250, 395
AccII CGCG 2 cut(s) 153, 1161
AclWI GGATC 3 cut(s) 77, 128, 141
AcoI YGGCCR 3 cut(s) 6, 57, 531
AcsI RAATTY 2 cut(s) 853, 943
AcuI CTGAAG 2 cut(s) 182, 704
AcyI GRCGYC 2 cut(s) 597, 1100
AfaI GTAC 2 cut(s) 252, 397
AfiI CCNNNNNNNGG 3 cut(s) 66, 357, 688
AflIII ACRYGT 2 cut(s) 370, 520
AgeI ACCGGT 1 cut(s) 398
AgsI TTSAA 5 cut(s) 130, 613, 850, 943, 980
AjiI CACGTC 1 cut(s) 34
AluBI AGCT 2 cut(s) 698, 1115
AluI AGCT 2 cut(s) 698, 1115
Alw21I GWGCWC 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 1085
AlwI GGATC 3 cut(s) 77, 128, 141
AoxI GGCC 5 cut(s) 6, 57, 348, 531, 903
ApeKI GCWGC 1 cut(s) 1115
ApoI RAATTY 2 cut(s) 853, 943
AsiGI ACCGGT 1 cut(s) 398
Asp718I GGTACC 2 cut(s) 250, 395
AspLEI GCGC 1 cut(s) 589
AspS9I GGNCC 5 cut(s) 348, 377, 679, 904, 1182
AsuHPI GGTGA 4 cut(s) 289, 326, 332, 1178
AvaII GGWCC 3 cut(s) 377, 679, 1182
BaeGI GKGCMC 1 cut(s) 874
BamHI GGATCC 1 cut(s) 133
BanI GGYRCC 2 cut(s) 250, 395
BauI CACGAG 1 cut(s) 1069
Bbv12I GWGCWC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 1102
BccI CCATC 7 cut(s) 641, 749, 814, 995, 1025, 1073, 1123
BceAI ACGGC 2 cut(s) 123, 605
BciVI GTATCC 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 1085
BfaI CTAG 3 cut(s) 777, 830, 1192
BfuAI ACCTGC 1 cut(s) 290
BfuI GTATCC 1 cut(s) 223
BglI GCCNNNNNGGC 1 cut(s) 674
BglII AGATCT 1 cut(s) 123
BisI GCNGC 4 cut(s) 57, 903, 1006, 1116
BlsI GCNGC 4 cut(s) 58, 904, 1007, 1117
Bme18I GGWCC 3 cut(s) 377, 679, 1182
BmgBI CACGTC 1 cut(s) 34
BmgT120I GGNCC 5 cut(s) 348, 377, 679, 904, 1182
BmiI GGNNCC 7 cut(s) 135, 252, 397, 906, 1009, 1024, 1183
BmrI ACTGGG 1 cut(s) 715
BmsI GCATC 2 cut(s) 463, 874
BmuI ACTGGG 1 cut(s) 715
BsaBI GATNNNNATC 1 cut(s) 1083
BsaHI GRCGYC 2 cut(s) 597, 1100
BsaJI CCNNGG 5 cut(s) 151, 243, 380, 621, 1176
BsaWI WCCGGW 1 cut(s) 398
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 357, 688
Bse118I RCCGGY 1 cut(s) 398
Bse1I ACTGG 2 cut(s) 721, 769
Bse3DI GCAATG 1 cut(s) 567
Bse8I GATNNNNATC 1 cut(s) 1083
BseDI CCNNGG 5 cut(s) 151, 243, 380, 621, 1176
BseGI GGATG 5 cut(s) 226, 342, 412, 814, 889
BseJI GATNNNNATC 1 cut(s) 1083
BseLI CCNNNNNNNGG 3 cut(s) 66, 357, 688
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 3 cut(s) 690, 1026, 1080
BseNI ACTGG 2 cut(s) 721, 769
BseRI GAGGAG 4 cut(s) 239, 346, 1000, 1015
BseSI GKGCMC 1 cut(s) 874
BseXI GCAGC 1 cut(s) 1102
Bsh1236I CGCG 2 cut(s) 153, 1161
Bsh1285I CGRYCG 1 cut(s) 967
BshFI GGCC 5 cut(s) 8, 59, 350, 533, 905
BshNI GGYRCC 2 cut(s) 250, 395
BshTI ACCGGT 1 cut(s) 398
BsiEI CGRYCG 1 cut(s) 967
BsiHKAI GWGCWC 1 cut(s) 33
BsiSI CCGG 1 cut(s) 399
BslI CCNNNNNNNGG 3 cut(s) 66, 357, 688
BsmAI GTCTC 1 cut(s) 1085
BsnI GGCC 5 cut(s) 8, 59, 350, 533, 905
Bsp1286I GDGCHC 2 cut(s) 33, 874
Bsp143I GATC 5 cut(s) 82, 123, 133, 964, 1168
BspANI GGCC 5 cut(s) 8, 59, 350, 533, 905
BspCNI CTCAG 3 cut(s) 691, 1025, 1081
BspFNI CGCG 2 cut(s) 153, 1161
BspLI GGNNCC 7 cut(s) 135, 252, 397, 906, 1009, 1024, 1183
BspMI ACCTGC 1 cut(s) 290
BspPI GGATC 3 cut(s) 77, 128, 141
BspT107I GGYRCC 2 cut(s) 250, 395
BsrDI GCAATG 1 cut(s) 567
BsrFI RCCGGY 1 cut(s) 398
BsrI ACTGG 2 cut(s) 721, 769
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 5 cut(s) 151, 243, 380, 621, 1176
BssMI GATC 5 cut(s) 82, 123, 133, 964, 1168
BssNI GRCGYC 2 cut(s) 597, 1100
BssSI CACGAG 1 cut(s) 1069
BssT1I CCWWGG 3 cut(s) 243, 380, 1176
Bst2BI CACGAG 1 cut(s) 1069
Bst4CI ACNGT 4 cut(s) 79, 286, 388, 584
Bst6I CTCTTC 1 cut(s) 434
BstACI GRCGYC 2 cut(s) 597, 1100
BstC8I GCNNGC 1 cut(s) 618
BstDEI CTNAG 5 cut(s) 561, 699, 1012, 1089, 1119
BstDSI CCRYGG 2 cut(s) 151, 621
BstENI CCTNNNNNAGG 1 cut(s) 686
BstF5I GGATG 5 cut(s) 226, 342, 412, 814, 889
BstFNI CGCG 2 cut(s) 153, 1161
BstHHI GCGC 1 cut(s) 589
BstKTI GATC 5 cut(s) 85, 126, 136, 967, 1171
BstMAI GTCTC 1 cut(s) 1085
BstMBI GATC 5 cut(s) 82, 123, 133, 964, 1168
BstMCI CGRYCG 1 cut(s) 967
BstMWI GCNNNNNNNGC 5 cut(s) 644, 653, 674, 800, 842
BstNSI RCATGY 2 cut(s) 374, 524
BstSLI GKGCMC 1 cut(s) 874
BstUI CGCG 2 cut(s) 153, 1161
BstV1I GCAGC 1 cut(s) 1102
BstX2I RGATCY 2 cut(s) 123, 133
BstYI RGATCY 2 cut(s) 123, 133
BsuI GTATCC 1 cut(s) 223
BsuRI GGCC 5 cut(s) 8, 59, 350, 533, 905
BtgI CCRYGG 2 cut(s) 151, 621
BtgZI GCGATG 1 cut(s) 619
BtrI CACGTC 1 cut(s) 34
BtsCI GGATG 5 cut(s) 226, 342, 412, 814, 889
BveI ACCTGC 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 618
CfoI GCGC 1 cut(s) 589
Cfr10I RCCGGY 1 cut(s) 398
Cfr13I GGNCC 5 cut(s) 348, 377, 679, 904, 1182
Cfr42I CCGCGG 1 cut(s) 154
CseI GACGC 2 cut(s) 815, 1108
Csp6I GTAC 2 cut(s) 251, 396
CspAI ACCGGT 1 cut(s) 398
CviAII CATG 2 cut(s) 371, 521
CviQI GTAC 2 cut(s) 251, 396
DdeI CTNAG 5 cut(s) 561, 699, 1012, 1089, 1119
DpnI GATC 5 cut(s) 84, 125, 135, 966, 1170
DpnII GATC 5 cut(s) 82, 123, 133, 964, 1168
EaeI YGGCCR 3 cut(s) 6, 57, 531
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
EciI GGCGGA 3 cut(s) 125, 527, 1174
Eco130I CCWWGG 3 cut(s) 243, 380, 1176
Eco47I GGWCC 3 cut(s) 377, 679, 1182
Eco57I CTGAAG 2 cut(s) 182, 704
EcoNI CCTNNNNNAGG 1 cut(s) 686
EcoRI GAATTC 1 cut(s) 853
EcoT14I CCWWGG 3 cut(s) 243, 380, 1176
ErhI CCWWGG 3 cut(s) 243, 380, 1176
FaeI CATG 2 cut(s) 374, 524
FaiI YATR 5 cut(s) 44, 305, 372, 431, 522
FalI AAGNNNNNCTT 2 cut(s) 720, 752
FatI CATG 2 cut(s) 370, 520
FauI CCCGC 3 cut(s) 11, 193, 262
Fnu4HI GCNGC 4 cut(s) 57, 903, 1006, 1116
FokI GGATG 5 cut(s) 233, 349, 419, 821, 896
Fsp4HI GCNGC 4 cut(s) 57, 903, 1006, 1116
FspBI CTAG 3 cut(s) 777, 830, 1192
GlaI GCGC 1 cut(s) 588
GluI GCNGC 4 cut(s) 57, 903, 1006, 1116
HaeIII GGCC 5 cut(s) 8, 59, 350, 533, 905
HapII CCGG 1 cut(s) 399
HgaI GACGC 2 cut(s) 815, 1108
HhaI GCGC 1 cut(s) 589
Hin1I GRCGYC 2 cut(s) 597, 1100
Hin1II CATG 2 cut(s) 374, 524
Hin6I GCGC 1 cut(s) 587
HinP1I GCGC 1 cut(s) 587
HinfI GANTC 2 cut(s) 969, 992
HpaII CCGG 1 cut(s) 399
HphI GGTGA 4 cut(s) 289, 326, 332, 1178
Hpy166II GTNNAC 1 cut(s) 893
Hpy188I TCNGA 6 cut(s) 162, 472, 602, 1015, 1030, 1078
Hpy188III TCNNGA 8 cut(s) 121, 127, 593, 682, 830, 850, 1056, 1088
Hpy8I GTNNAC 1 cut(s) 893
Hpy99I CGWCG 5 cut(s) 109, 599, 977, 1102, 1161
HpyAV CCTTC 7 cut(s) 124, 268, 311, 473, 484, 682, 1058
HpyCH4III ACNGT 4 cut(s) 79, 286, 388, 584
HpyCH4IV ACGT 4 cut(s) 33, 263, 597, 1156
HpyCH4V TGCA 1 cut(s) 727
HpyF10VI GCNNNNNNNGC 5 cut(s) 644, 653, 674, 800, 842
HpyF3I CTNAG 5 cut(s) 561, 699, 1012, 1089, 1119
HpySE526I ACGT 4 cut(s) 33, 263, 597, 1156
Hsp92I GRCGYC 2 cut(s) 597, 1100
Hsp92II CATG 2 cut(s) 374, 524
HspAI GCGC 1 cut(s) 587
KpnI GGTACC 2 cut(s) 254, 399
KspI CCGCGG 1 cut(s) 154
Kzo9I GATC 5 cut(s) 82, 123, 133, 964, 1168
LmnI GCTCC 3 cut(s) 28, 1013, 1028
Lsp1109I GCAGC 1 cut(s) 1102
LweI GCATC 2 cut(s) 463, 874
MaeI CTAG 3 cut(s) 777, 830, 1192
MaeII ACGT 4 cut(s) 33, 263, 597, 1156
MaeIII GTNAC 2 cut(s) 264, 277
MalI GATC 5 cut(s) 84, 125, 135, 966, 1170
MboI GATC 5 cut(s) 82, 123, 133, 964, 1168
MflI RGATCY 2 cut(s) 123, 133
MhlI GDGCHC 2 cut(s) 33, 874
MluCI AATT 4 cut(s) 37, 797, 853, 943
MlyI GAGTC 1 cut(s) 978
MmeI TCCRAC 1 cut(s) 475
MseI TTAA 5 cut(s) 24, 579, 663, 840, 915
MspA1I CMGCKG 2 cut(s) 153, 257
MspI CCGG 1 cut(s) 399
MvnI CGCG 2 cut(s) 153, 1161
MwoI GCNNNNNNNGC 5 cut(s) 644, 653, 674, 800, 842
NdeII GATC 5 cut(s) 82, 123, 133, 964, 1168
NlaIII CATG 2 cut(s) 374, 524
NlaIV GGNNCC 7 cut(s) 135, 252, 397, 906, 1009, 1024, 1183
NmeAIII GCCGAG 2 cut(s) 559, 694
NmuCI GTSAC 2 cut(s) 264, 277
NspI RCATGY 2 cut(s) 374, 524
PciI ACATGT 2 cut(s) 370, 520
PfeI GAWTC 1 cut(s) 992
PinAI ACCGGT 1 cut(s) 398
PkrI GCNGC 4 cut(s) 58, 904, 1007, 1117
Ple19I CGATCG 1 cut(s) 967
PleI GAGTC 1 cut(s) 977
PpsI GAGTC 1 cut(s) 977
PscI ACATGT 2 cut(s) 370, 520
PspN4I GGNNCC 7 cut(s) 135, 252, 397, 906, 1009, 1024, 1183
PspPI GGNCC 5 cut(s) 348, 377, 679, 904, 1182
PsuI RGATCY 2 cut(s) 123, 133
PvuI CGATCG 1 cut(s) 967
RsaI GTAC 2 cut(s) 252, 397
RsaNI GTAC 2 cut(s) 251, 396
SacII CCGCGG 1 cut(s) 154
SaqAI TTAA 5 cut(s) 24, 579, 663, 840, 915
SatI GCNGC 4 cut(s) 57, 903, 1006, 1116
Sau3AI GATC 5 cut(s) 82, 123, 133, 964, 1168
Sau96I GGNCC 5 cut(s) 348, 377, 679, 904, 1182
SchI GAGTC 1 cut(s) 978
SduI GDGCHC 2 cut(s) 33, 874
SfaNI GCATC 2 cut(s) 463, 874
Sfr303I CCGCGG 1 cut(s) 154
SgrBI CCGCGG 1 cut(s) 154
SinI GGWCC 3 cut(s) 377, 679, 1182
Sse9I AATT 4 cut(s) 37, 797, 853, 943
SspMI CTAG 3 cut(s) 777, 830, 1192
StyI CCWWGG 3 cut(s) 243, 380, 1176
TaaI ACNGT 4 cut(s) 79, 286, 388, 584
TaiI ACGT 4 cut(s) 36, 266, 600, 1159
TaqI TCGA 4 cut(s) 146, 594, 967, 1097
TaqII GACCGA 1 cut(s) 365
TasI AATT 4 cut(s) 37, 797, 853, 943
TauI GCSGC 3 cut(s) 59, 905, 1008
TfiI GAWTC 1 cut(s) 992
Tru1I TTAA 5 cut(s) 24, 579, 663, 840, 915
Tru9I TTAA 5 cut(s) 24, 579, 663, 840, 915
TseFI GTSAC 2 cut(s) 264, 277
TseI GCWGC 1 cut(s) 1115
Tsp45I GTSAC 2 cut(s) 264, 277
TspDTI ATGAA 4 cut(s) 353, 423, 503, 825
TspGWI ACGGA 3 cut(s) 323, 456, 896
VpaK11BI GGWCC 3 cut(s) 377, 679, 1182
XagI CCTNNNNNAGG 1 cut(s) 686
XapI RAATTY 2 cut(s) 853, 943
XbaI TCTAGA 1 cut(s) 829
XceI RCATGY 2 cut(s) 374, 524
XspI CTAG 3 cut(s) 777, 830, 1192
ZraI GACGTC 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.