Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000093.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Forward (+)

7851 .. 8860

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000093.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atggcggatatcggcgacatcaaagactacgtcaactttatgattgatgaggtggccaaggtgcggaagcaaactgttgatccgcaaataagggagacaatgatggagaaggaggcaaaaattctagcggctccgctacactccaatcgtgccaatctgaagaagaagaaaacggggggggggggggggggcaaagaaaaaaatgtggcagatgagggtgaacaaaagaatgaagaagatacagggtttgttctggaggtgcccgctgataagcctcaggagaaagcaacacttgctgtcaatgagctcgatgtagcgccatcaggaaggtctggagtgccgcaacagaggaagattgtcgcctccgccgttcctccagatccttcgaagaagatgaaggttggagagaagcatgtggcggaaaaacatgttatggctagccataaagatgttagaggaaagtttgtctccgacaaccctgtcgtaggagtgtctcggctagtggtgtcgtcaaagctggagaagtccctagatctgattttgaagggtgctcatcagctttaccttcatcagggctctgtggaggaccacaaactcaaagaagaacttctgcaagcacaacgtgacttgtcggcagagagggagaagaataagttcaccgctagggacattgccaagcttgacggtgccctacttgacgtcaaagagaagttcaagagtgttgtggataaaactatcgctgataccctcaccattaccaaccttaatgccgagttggtggccctgaagaatgagaaggctgagagagaagataccatcactcagttgtatgaggcgcttatagccaaagaaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

31.42

Weight (kDa)

7.8

Isoelectric Point (pI)

22.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	479
AatII	GACGTC	1 cut(s)	702
AccB1I	GGYRCC	2 cut(s)	259, 686
AclWI	GGATC	2 cut(s)	74, 374
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	120
AcuI	CTGAAG	2 cut(s)	179, 806
AcyI	GRCGYC	1 cut(s)	699
AdeI	CACNNNGTG	1 cut(s)	623
AfiI	CCNNNNNNNGG	3 cut(s)	63, 485, 571
AflIII	ACRYGT	1 cut(s)	427
AgsI	TTSAA	2 cut(s)	544, 715
AluBI	AGCT	4 cut(s)	307, 517, 559, 679
AluI	AGCT	4 cut(s)	307, 517, 559, 679
Alw21I	GWGCWC	2 cut(s)	309, 553
Alw26I	GTCTC	3 cut(s)	89, 472, 498
AlwI	GGATC	2 cut(s)	74, 374
AoxI	GGCC	2 cut(s)	54, 780
ApoI	RAATTY	1 cut(s)	120
ArsI	GACNNNNNNTTYG	2 cut(s)	15, 47
Asp700I	GAANNNNTTC	2 cut(s)	606, 653
AspLEI	GCGC	2 cut(s)	319, 838
AspS9I	GGNCC	2 cut(s)	586, 781
AsuHPI	GGTGA	3 cut(s)	230, 649, 742
AsuII	TTCGAA	1 cut(s)	386
AsuNHI	GCTAGC	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	586
AxyI	CCTNAGG	1 cut(s)	276
BaeGI	GKGCMC	2 cut(s)	264, 691
BalI	TGGCCA	1 cut(s)	56
BanI	GGYRCC	2 cut(s)	259, 686
BanII	GRGCYC	2 cut(s)	309, 578
Bbv12I	GWGCWC	2 cut(s)	309, 553
BccI	CCATC	3 cut(s)	97, 328, 824
BceAI	ACGGC	1 cut(s)	353
BcoDI	GTCTC	3 cut(s)	89, 472, 498
BfaI	CTAG	5 cut(s)	125, 438, 500, 530, 663
BfoI	RGCGCY	2 cut(s)	320, 839
BglII	AGATCT	1 cut(s)	532
BisI	GCNGC	2 cut(s)	129, 341
BlsI	GCNGC	2 cut(s)	130, 342
Bme18I	GGWCC	1 cut(s)	586
BmgT120I	GGNCC	2 cut(s)	586, 781
BmiI	GGNNCC	3 cut(s)	132, 261, 688
BmtI	GCTAGC	1 cut(s)	441
BpmI	CTGGAG	4 cut(s)	275, 354, 360, 539
Bpu14I	TTCGAA	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	699
BsaJI	CCNNGG	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	3 cut(s)	63, 485, 571
Bse21I	CCTNAGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	669
BseDI	CCNNGG	1 cut(s)	57
BseLI	CCNNNNNNNGG	3 cut(s)	63, 485, 571
BseMI	GCAATG	1 cut(s)	669
BseMII	CTCAG	3 cut(s)	290, 792, 836
BseSI	GKGCMC	2 cut(s)	264, 691
BshFI	GGCC	2 cut(s)	56, 782
BshNI	GGYRCC	2 cut(s)	259, 686
BsiHKAI	GWGCWC	2 cut(s)	309, 553
BslFI	GGGAC	2 cut(s)	511, 680
BslI	CCNNNNNNNGG	3 cut(s)	63, 485, 571
BsmAI	GTCTC	3 cut(s)	89, 472, 498
BsmFI	GGGAC	2 cut(s)	511, 680
BsnI	GGCC	2 cut(s)	56, 782
Bsp119I	TTCGAA	1 cut(s)	386
Bsp1286I	GDGCHC	5 cut(s)	264, 309, 553, 578, 691
Bsp143I	GATC	3 cut(s)	79, 379, 532
BspANI	GGCC	2 cut(s)	56, 782
BspCNI	CTCAG	3 cut(s)	289, 793, 835
BspLI	GGNNCC	3 cut(s)	132, 261, 688
BspOI	GCTAGC	1 cut(s)	441
BspPI	GGATC	2 cut(s)	74, 374
BspT104I	TTCGAA	1 cut(s)	386
BspT107I	GGYRCC	2 cut(s)	259, 686
BsrDI	GCAATG	1 cut(s)	669
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	3 cut(s)	79, 379, 532
BssNI	GRCGYC	1 cut(s)	699
BssT1I	CCWWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	76, 686
BstACI	GRCGYC	1 cut(s)	699
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstBI	TTCGAA	1 cut(s)	386
BstC8I	GCNNGC	3 cut(s)	264, 439, 615
BstDEI	CTNAG	3 cut(s)	276, 801, 822
BstENI	CCTNNNNNAGG	2 cut(s)	483, 569
BstH2I	RGCGCY	2 cut(s)	320, 839
BstHHI	GCGC	2 cut(s)	319, 838
BstKTI	GATC	3 cut(s)	82, 382, 535
BstMAI	GTCTC	3 cut(s)	89, 472, 498
BstMBI	GATC	3 cut(s)	79, 379, 532
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 842
BstNSI	RCATGY	2 cut(s)	416, 431
BstSLI	GKGCMC	2 cut(s)	264, 691
BstX2I	RGATCY	2 cut(s)	379, 532
BstYI	RGATCY	2 cut(s)	379, 532
Bsu36I	CCTNAGG	1 cut(s)	276
BsuRI	GGCC	2 cut(s)	56, 782
Cac8I	GCNNGC	3 cut(s)	264, 439, 615
CfoI	GCGC	2 cut(s)	319, 838
Cfr13I	GGNCC	2 cut(s)	586, 781
CviAII	CATG	2 cut(s)	413, 428
DdeI	CTNAG	3 cut(s)	276, 801, 822
DpnI	GATC	3 cut(s)	81, 381, 534
DpnII	GATC	3 cut(s)	79, 379, 532
DraIII	CACNNNGTG	1 cut(s)	623
DrdI	GACNNNNNNGTC	1 cut(s)	479
DseDI	GACNNNNNNGTC	1 cut(s)	479
EaeI	YGGCCR	1 cut(s)	54
EciI	GGCGGA	3 cut(s)	20, 355, 434
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	57
Eco24I	GRGCYC	2 cut(s)	309, 578
Eco32I	GATATC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	586
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	2 cut(s)	179, 806
Eco81I	CCTNAGG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	307
EcoNI	CCTNNNNNAGG	2 cut(s)	483, 569
EcoRV	GATATC	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	57
EcoT38I	GRGCYC	2 cut(s)	309, 578
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	2 cut(s)	416, 431
FaiI	YATR	7 cut(s)	41, 414, 429, 434, 444, 831, 842
FalI	AAGNNNNNCTT	4 cut(s)	276, 308, 591, 623
FaqI	GGGAC	2 cut(s)	511, 680
FatI	CATG	2 cut(s)	412, 427
FauI	CCCGC	1 cut(s)	271
Fnu4HI	GCNGC	2 cut(s)	129, 341
FriOI	GRGCYC	2 cut(s)	309, 578
Fsp4HI	GCNGC	2 cut(s)	129, 341
FspBI	CTAG	5 cut(s)	125, 438, 500, 530, 663
GlaI	GCGC	2 cut(s)	318, 837
GluI	GCNGC	2 cut(s)	129, 341
GsuI	CTGGAG	4 cut(s)	275, 354, 360, 539
HaeII	RGCGCY	2 cut(s)	320, 839
HaeIII	GGCC	2 cut(s)	56, 782
HhaI	GCGC	2 cut(s)	319, 838
Hin1I	GRCGYC	1 cut(s)	699
Hin1II	CATG	2 cut(s)	416, 431
Hin6I	GCGC	2 cut(s)	317, 836
HinP1I	GCGC	2 cut(s)	317, 836
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	677
HphI	GGTGA	3 cut(s)	230, 649, 742
Hpy166II	GTNNAC	3 cut(s)	34, 221, 657
Hpy188I	TCNGA	3 cut(s)	159, 472, 537
Hpy188III	TCNNGA	6 cut(s)	254, 278, 324, 333, 377, 715
Hpy8I	GTNNAC	3 cut(s)	34, 221, 657
HpyAV	CCTTC	7 cut(s)	103, 321, 391, 393, 538, 575, 790
HpyCH4III	ACNGT	2 cut(s)	76, 686
HpyCH4IV	ACGT	3 cut(s)	30, 622, 699
HpyCH4V	TGCA	1 cut(s)	613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 842
HpyF3I	CTNAG	3 cut(s)	276, 801, 822
HpySE526I	ACGT	3 cut(s)	30, 622, 699
Hsp92I	GRCGYC	1 cut(s)	699
Hsp92II	CATG	2 cut(s)	416, 431
HspAI	GCGC	2 cut(s)	317, 836
Kzo9I	GATC	3 cut(s)	79, 379, 532
LmnI	GCTCC	1 cut(s)	136
MaeI	CTAG	5 cut(s)	125, 438, 500, 530, 663
MaeII	ACGT	3 cut(s)	30, 622, 699
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	3 cut(s)	81, 381, 534
MboI	GATC	3 cut(s)	79, 379, 532
MflI	RGATCY	2 cut(s)	379, 532
MhlI	GDGCHC	5 cut(s)	264, 309, 553, 578, 691
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	1 cut(s)	120
MluNI	TGGCCA	1 cut(s)	56
MmeI	TCCRAC	2 cut(s)	382, 495
Mox20I	TGGCCA	1 cut(s)	56
MroXI	GAANNNNTTC	2 cut(s)	606, 653
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	1 cut(s)	765
MslI	CAYNNNNRTG	1 cut(s)	447
Msp20I	TGGCCA	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	266
MwoI	GCNNNNNNNGC	2 cut(s)	293, 842
NdeII	GATC	3 cut(s)	79, 379, 532
NheI	GCTAGC	1 cut(s)	437
NlaIII	CATG	2 cut(s)	416, 431
NlaIV	GGNNCC	3 cut(s)	132, 261, 688
NmeAIII	GCCGAG	2 cut(s)	475, 796
NmuCI	GTSAC	1 cut(s)	623
NspI	RCATGY	2 cut(s)	416, 431
NspV	TTCGAA	1 cut(s)	386
PciI	ACATGT	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PdmI	GAANNNNTTC	2 cut(s)	606, 653
PflFI	GACNNNGTC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	130, 342
PscI	ACATGT	1 cut(s)	427
Psp124BI	GAGCTC	1 cut(s)	309
PspN4I	GGNNCC	3 cut(s)	132, 261, 688
PspPI	GGNCC	2 cut(s)	586, 781
PsuI	RGATCY	2 cut(s)	379, 532
PsyI	GACNNNGTC	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	447
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	765
SatI	GCNGC	2 cut(s)	129, 341
Sau3AI	GATC	3 cut(s)	79, 379, 532
Sau96I	GGNCC	2 cut(s)	586, 781
SduI	GDGCHC	5 cut(s)	264, 309, 553, 578, 691
SfuI	TTCGAA	1 cut(s)	386
SinI	GGWCC	1 cut(s)	586
SmiMI	CAYNNNNRTG	1 cut(s)	447
Sse9I	AATT	1 cut(s)	120
SspMI	CTAG	5 cut(s)	125, 438, 500, 530, 663
SstI	GAGCTC	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	76, 686
TaiI	ACGT	3 cut(s)	33, 625, 702
TaqI	TCGA	2 cut(s)	309, 386
TasI	AATT	1 cut(s)	120
TauI	GCSGC	2 cut(s)	131, 343
Tru1I	TTAA	1 cut(s)	765
Tru9I	TTAA	1 cut(s)	765
TseFI	GTSAC	1 cut(s)	623
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	3 cut(s)	246, 410, 557
Tth111I	GACNNNGTC	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	586
XagI	CCTNNNNNAGG	2 cut(s)	483, 569
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	2 cut(s)	416, 431
XmnI	GAANNNNTTC	2 cut(s)	606, 653
XspI	CTAG	5 cut(s)	125, 438, 500, 530, 663
ZraI	GACGTC	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.