Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Reverse (-)

12382953 .. 12392307

Gene Structure 9355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00090700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGGCCGATCGTTCCCATCTTCGCGGCCAAAGTGCGAAACGGTCGTTGATCCGCAAACGAGAGAGATAACGACGGCGAAAGAAGCGCAGATCTTGAAGGCTCTGCTACACTCAAACCGCGCCAATGCGAAGAAGAAGAAAGCGAGGAGCAAAGGGAAAAATGTGGCGGGAGAGAGTGAGCAAGAGGGTGAGGAGGATACGTGGTTTGCCTTGGAGATACACAGTGACAAGTCACGGGAGAAGGTTGCTGGAAGACTGAAGCTCATAGAGGAGCTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

93

Amino Acids

10.45

Weight (kDa)

9.52

Isoelectric Point (pI)

49.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	25, 120
AciI	CCGC	4 cut(s)	25, 53, 118, 167
AclWI	GGATC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	26
AcuI	CTGAAG	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	97
AluBI	AGCT	2 cut(s)	262, 274
AluI	AGCT	2 cut(s)	262, 274
Alw21I	GWGCWC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	44
AoxI	GGCC	2 cut(s)	4, 26
AspLEI	GCGC	2 cut(s)	88, 122
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	276
BccI	CCATC	1 cut(s)	25
BceAI	ACGGC	1 cut(s)	90
BciVI	GTATCC	1 cut(s)	190
BfuI	GTATCC	1 cut(s)	190
BglII	AGATCT	1 cut(s)	90
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	4
BpiI	GAAGAC	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	260
BsaAI	YACGTR	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	210
BsaXI	ACNNNNNCTCC	3 cut(s)	185, 215, 263
BseDI	CCNNGG	1 cut(s)	210
BseRI	GAGGAG	2 cut(s)	160, 206
Bsh1236I	CGCG	2 cut(s)	25, 120
Bsh1285I	CGRYCG	2 cut(s)	11, 45
BshFI	GGCC	2 cut(s)	6, 28
BsiEI	CGRYCG	2 cut(s)	11, 45
BsiHKAI	GWGCWC	1 cut(s)	276
BsnI	GGCC	2 cut(s)	6, 28
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	3 cut(s)	8, 49, 90
BspACI	CCGC	4 cut(s)	25, 53, 118, 167
BspANI	GGCC	2 cut(s)	6, 28
BspFNI	CGCG	2 cut(s)	25, 120
BspPI	GGATC	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	3 cut(s)	8, 49, 90
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	43, 224
BstBAI	YACGTR	1 cut(s)	201
BstFNI	CGCG	2 cut(s)	25, 120
BstHHI	GCGC	2 cut(s)	88, 122
BstKTI	GATC	3 cut(s)	11, 52, 93
BstMBI	GATC	3 cut(s)	8, 49, 90
BstMCI	CGRYCG	2 cut(s)	11, 45
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstUI	CGCG	2 cut(s)	25, 120
BstV2I	GAAGAC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
BsuI	GTATCC	1 cut(s)	190
BsuRI	GGCC	2 cut(s)	6, 28
BtsIMutI	CAGTG	1 cut(s)	229
CfoI	GCGC	2 cut(s)	88, 122
Cfr13I	GGNCC	1 cut(s)	4
CviJI	RGCY	5 cut(s)	6, 28, 101, 262, 274
CviKI_1	RGCY	5 cut(s)	6, 28, 101, 262, 274
DpnI	GATC	3 cut(s)	10, 51, 92
DpnII	GATC	3 cut(s)	8, 49, 90
EaeI	YGGCCR	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	210
FaiI	YATR	1 cut(s)	266
FauI	CCCGC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	26
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	26
GlaI	GCGC	2 cut(s)	87, 121
GluI	GCNGC	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	6, 28
HhaI	GCGC	2 cut(s)	88, 122
Hin6I	GCGC	2 cut(s)	86, 120
HinP1I	GCGC	2 cut(s)	86, 120
HphI	GGTGA	1 cut(s)	200
Hpy188III	TCNNGA	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	91, 235
HpyCH4III	ACNGT	2 cut(s)	43, 224
HpyCH4IV	ACGT	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpySE526I	ACGT	1 cut(s)	200
HspAI	GCGC	2 cut(s)	86, 120
Kzo9I	GATC	3 cut(s)	8, 49, 90
LmnI	GCTCC	2 cut(s)	147, 271
LpnPI	CCDG	1 cut(s)	234
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	2 cut(s)	224, 231
MalI	GATC	3 cut(s)	10, 51, 92
MboI	GATC	3 cut(s)	8, 49, 90
MboII	GAAGA	5 cut(s)	12, 142, 145, 148, 264
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	276
MnlI	CCTC	5 cut(s)	138, 178, 184, 187, 262
MvnI	CGCG	2 cut(s)	25, 120
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	3 cut(s)	8, 49, 90
NmuCI	GTSAC	2 cut(s)	224, 231
PkrI	GCNGC	1 cut(s)	27
Ple19I	CGATCG	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	201
Psp124BI	GAGCTC	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	90
PvuI	CGATCG	1 cut(s)	11
SacI	GAGCTC	1 cut(s)	276
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	3 cut(s)	8, 49, 90
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	4 cut(s)	203, 246, 264, 276
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
SsiI	CCGC	4 cut(s)	25, 53, 118, 167
SstI	GAGCTC	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	43, 224
TaiI	ACGT	1 cut(s)	203
TauI	GCSGC	1 cut(s)	28
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	2 cut(s)	224, 231
Tsp45I	GTSAC	2 cut(s)	224, 231
TspRI	CASTG	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.