Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8422805.1

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 643

Gene Structure 642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8422805.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 520 bp

atgctcaaggagtgcgagtggcttggatttggtggtgaggctagattggctcaacctacggcatcctcgagagagaaaagcagggtcaccgcgagagatatggccaagcttgatgctgcccaattgcagcaggcgcttacagccaaagagaaagagttggcgaactttcagtctgctaggcaggaagatatggcgaagctggaggaggatgataaggagatggtgcgcttagaggcagttgatgcttttaagaagtcggcagattttaagacacttctgacaaatgctggtaaacaaggtgctaccgccaactttaaggagctcaaagatagcggctatttgaactttgacaagataatagctgatcgagccccatcacaacccacgcctagaaaggatgttgagggatctttagatgacggttcctcatattgcggctcttctgatggtagcgcgaatagtggttattctggagaagatgtgaggtctgatgttaatcctgagactccgacaccgacaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

18.79

Weight (kDa)

4.81

Isoelectric Point (pI)

29.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	92, 455
AciI	CCGC	4 cut(s)	90, 306, 333, 435
AclWI	GGATC	1 cut(s)	415
AcoI	YGGCCR	1 cut(s)	102
AgsI	TTSAA	1 cut(s)	343
AluBI	AGCT	4 cut(s)	109, 199, 322, 362
AluI	AGCT	4 cut(s)	109, 199, 322, 362
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	497
AlwI	GGATC	1 cut(s)	415
Ama87I	CYCGRG	1 cut(s)	67
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	2 cut(s)	116, 127
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AspLEI	GCGC	3 cut(s)	136, 228, 455
AsuHPI	GGTGA	2 cut(s)	47, 79
AvaI	CYCGRG	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	104
BanII	GRGCYC	2 cut(s)	324, 373
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	103, 139
BccI	CCATC	3 cut(s)	214, 382, 440
BceAI	ACGGC	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	497
BfaI	CTAG	3 cut(s)	42, 177, 390
BfoI	RGCGCY	1 cut(s)	137
BisI	GCNGC	4 cut(s)	117, 128, 334, 436
BlsI	GCNGC	4 cut(s)	118, 129, 335, 437
BmeT110I	CYCGRG	1 cut(s)	67
BmiI	GGNNCC	1 cut(s)	424
BmsI	GCATC	3 cut(s)	71, 103, 232
BpmI	CTGGAG	2 cut(s)	221, 492
BsaBI	GATNNNNATC	1 cut(s)	495
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 465, 495
Bse8I	GATNNNNATC	1 cut(s)	495
BseGI	GGATG	3 cut(s)	62, 214, 403
BseJI	GATNNNNATC	1 cut(s)	495
BseMII	CTCAG	1 cut(s)	492
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	2 cut(s)	103, 139
Bsh1236I	CGCG	2 cut(s)	92, 455
BshFI	GGCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	497
BsnI	GGCC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	324, 373
Bsp143I	GATC	2 cut(s)	364, 407
BspACI	CCGC	4 cut(s)	90, 306, 333, 435
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	493
BspFNI	CGCG	2 cut(s)	92, 455
BspLI	GGNNCC	1 cut(s)	424
BspPI	GGATC	1 cut(s)	415
BspQI	GCTCTTC	1 cut(s)	445
BssMI	GATC	2 cut(s)	364, 407
Bst4CI	ACNGT	1 cut(s)	422
Bst6I	CTCTTC	1 cut(s)	445
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	229, 501
BstEII	GGTNACC	1 cut(s)	85
BstF5I	GGATG	3 cut(s)	62, 214, 403
BstFNI	CGCG	2 cut(s)	92, 455
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	3 cut(s)	136, 228, 455
BstKTI	GATC	2 cut(s)	367, 410
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	2 cut(s)	364, 407
BstMWI	GCNNNNNNNGC	5 cut(s)	47, 133, 140, 242, 368
BstPI	GGTNACC	1 cut(s)	85
BstUI	CGCG	2 cut(s)	92, 455
BstV1I	GCAGC	2 cut(s)	103, 139
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	104
BtsCI	GGATG	3 cut(s)	62, 214, 403
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	3 cut(s)	136, 228, 455
DdeI	CTNAG	2 cut(s)	229, 501
DpnI	GATC	2 cut(s)	366, 409
DpnII	GATC	2 cut(s)	364, 407
EaeI	YGGCCR	1 cut(s)	102
Eam1104I	CTCTTC	1 cut(s)	445
EarI	CTCTTC	1 cut(s)	445
Ecl136II	GAGCTC	1 cut(s)	322
Eco24I	GRGCYC	2 cut(s)	324, 373
Eco53kI	GAGCTC	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	67
Eco91I	GGTNACC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	322
EcoO65I	GGTNACC	1 cut(s)	85
EcoT38I	GRGCYC	2 cut(s)	324, 373
FaiI	YATR	3 cut(s)	101, 191, 430
Fnu4HI	GCNGC	4 cut(s)	117, 128, 334, 436
FokI	GGATG	3 cut(s)	49, 221, 410
FriOI	GRGCYC	2 cut(s)	324, 373
Fsp4HI	GCNGC	4 cut(s)	117, 128, 334, 436
FspBI	CTAG	3 cut(s)	42, 177, 390
GlaI	GCGC	3 cut(s)	135, 227, 454
GluI	GCNGC	4 cut(s)	117, 128, 334, 436
GsuI	CTGGAG	2 cut(s)	221, 492
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	104
HhaI	GCGC	3 cut(s)	136, 228, 455
Hin6I	GCGC	3 cut(s)	134, 226, 453
HinP1I	GCGC	3 cut(s)	134, 226, 453
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	505
HphI	GGTGA	2 cut(s)	47, 79
Hpy166II	GTNNAC	1 cut(s)	293
Hpy188I	TCNGA	4 cut(s)	279, 445, 490, 510
Hpy188III	TCNNGA	3 cut(s)	69, 471, 500
Hpy8I	GTNNAC	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	422
HpyCH4V	TGCA	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	5 cut(s)	47, 133, 140, 242, 368
HpyF3I	CTNAG	2 cut(s)	229, 501
HspAI	GCGC	3 cut(s)	134, 226, 453
Kzo9I	GATC	2 cut(s)	364, 407
LguI	GCTCTTC	1 cut(s)	445
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	7 cut(s)	67, 116, 167, 185, 273, 456, 513
Lsp1109I	GCAGC	2 cut(s)	103, 139
LweI	GCATC	3 cut(s)	71, 103, 232
MaeI	CTAG	3 cut(s)	42, 177, 390
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	2 cut(s)	366, 409
MboI	GATC	2 cut(s)	364, 407
MboII	GAAGA	3 cut(s)	197, 432, 488
MfeI	CAATTG	1 cut(s)	122
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	2 cut(s)	324, 373
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	1 cut(s)	122
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	499
MnlI	CCTC	8 cut(s)	31, 76, 196, 199, 226, 397, 436, 477
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	4 cut(s)	249, 267, 315, 495
Msp20I	TGGCCA	1 cut(s)	104
MunI	CAATTG	1 cut(s)	122
MvnI	CGCG	2 cut(s)	92, 455
MwoI	GCNNNNNNNGC	5 cut(s)	47, 133, 140, 242, 368
NdeII	GATC	2 cut(s)	364, 407
NlaIV	GGNNCC	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	85
PaeR7I	CTCGAG	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	65
PkrI	GCNGC	4 cut(s)	118, 129, 335, 437
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
Psp124BI	GAGCTC	1 cut(s)	324
PspEI	GGTNACC	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	407
SacI	GAGCTC	1 cut(s)	324
SapI	GCTCTTC	1 cut(s)	445
SaqAI	TTAA	4 cut(s)	249, 267, 315, 495
SatI	GCNGC	4 cut(s)	117, 128, 334, 436
Sau3AI	GATC	2 cut(s)	364, 407
SchI	GAGTC	1 cut(s)	499
SduI	GDGCHC	2 cut(s)	324, 373
SetI	ASST	7 cut(s)	58, 111, 201, 301, 324, 364, 488
SfaNI	GCATC	3 cut(s)	71, 103, 232
Sfr274I	CTCGAG	1 cut(s)	67
SlaI	CTCGAG	1 cut(s)	67
SmlI	CTYRAG	2 cut(s)	5, 67
SmoI	CTYRAG	2 cut(s)	5, 67
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	4 cut(s)	90, 306, 333, 435
SspMI	CTAG	3 cut(s)	42, 177, 390
SstI	GAGCTC	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	422
TaqI	TCGA	2 cut(s)	68, 367
TasI	AATT	1 cut(s)	122
TauI	GCSGC	2 cut(s)	336, 438
Tru1I	TTAA	4 cut(s)	249, 267, 315, 495
Tru9I	TTAA	4 cut(s)	249, 267, 315, 495
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	2 cut(s)	116, 127
Tsp45I	GTSAC	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	67
XspI	CTAG	3 cut(s)	42, 177, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.