Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002284

Physical Location & Seq

Genomic Coordinates Reverse (-)

40823950 .. 40825356

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00360390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAATGGCATCGCGACGAGTGAAAAGCATGAGATTGTCCACCAAAGTGAGGAGGCGGCGATGTCCGACGGTAGTGAGGGTAGTGTCAATGCTTTAGGTCAAAGTGACAAGGGGTTGAAGTTAAGGAGGAAGGGCAAAGTTGTCGGCCTACTAATTTTTCTTGGACCCTTAGCGATGAGGGGTTATGCCGCTATTCGCGAAGCCATCCTCACCTCCGAGTTTGCGATATCGCTGCACGAGCTGAATGTTCTGTTGGCCGAGGTTTCCATAAATATGTGGAAGATGTTGTTGGCTTTGACTACCTTATGGGAATTGTCGGGGTGCGAGTTTCCTACAATGGTTGAGGTTTTGTTCTTTTATGAGTTGACATACAATGAGAGAAAGAAGTGCGGAGGCACGGGTAAGCAAGAAAATGAGGAGGCTGGGCTAGTTCTAGAAGTTCCTGCAGGCAATCCTCGGGAGCAGACTACAATTGTTGTTAGAGAGGAGGATGTGACGAACAAAGATGGTAACAAGGAGCCAAAGAAGAAGGATGTTGAGAGGAGAAGAGAAGAAGATTATGGCGAGAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

21.34

Weight (kDa)

5.3

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002284)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0192511
rosa_multiflora	Rmu_co8144522.1_g000001 Rmu_co8168368.1_g000001 Rmu_co8422805.1_g000001 Rmu_co8467979.1_g000002 Rmu_sc0000093.1_g000007 Rmu_sc0000190.1_g000029 Rmu_sc0000212.1_g000006 Rmu_sc0000315.1_g000003 Rmu_sc0000600.1_g000039 Rmu_sc0000662.1_g000028 Rmu_sc0000962.1_g000025 Rmu_sc0001365.1_g000022 Rmu_sc0001788.1_g000023 Rmu_sc0002235.1_g000067 Rmu_sc0002281.1_g000014 Rmu_sc0002586.1_g000025 Rmu_sc0002680.1_g000040 Rmu_sc0003141.1_g000006 Rmu_sc0003328.1_g000006 Rmu_sc0003629.1_g000053 Rmu_sc0003825.1_g000024 Rmu_sc0004481.1_g000014 Rmu_sc0006037.1_g000001 Rmu_sc0006215.1_g000008 Rmu_sc0006215.1_g000009 Rmu_sc0006670.1_g000006 Rmu_sc0006670.1_g000015 Rmu_sc0007017.1_g000008 Rmu_sc0008177.1_g000012 Rmu_sc0008249.1_g000023 Rmu_sc0008565.1_g000023 Rmu_sc0011141.1_g000008 Rmu_sc0011198.1_g000009 Rmu_sc0019298.1_g000009 Rmu_sc0021048.1_g000004 Rmu_ssc0000434.1_g000053
rosa_roxburghii	Rroxscaffold_1G00031260 Rroxscaffold_2G00090700 Rroxscaffold_2G00121950 Rroxscaffold_3G00237340 Rroxscaffold_4G00310520 Rroxscaffold_5G00360390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	14, 198
AciI	CCGC	3 cut(s)	56, 189, 390
AcoI	YGGCCR	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	118
AjuI	GAANNNNNNNTTGG	4 cut(s)	236, 268, 272, 304
AleI	CACNNNNGTG	1 cut(s)	45
AluBI	AGCT	1 cut(s)	241
AluI	AGCT	1 cut(s)	241
Ama87I	CYCGRG	1 cut(s)	456
AoxI	GGCC	2 cut(s)	145, 255
ApeKI	GCWGC	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	456
AvaII	GGWCC	1 cut(s)	164
BauI	CACGAG	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	219
BccI	CCATC	2 cut(s)	212, 500
BcgI	CGANNNNNNTGC	4 cut(s)	124, 158, 214, 248
BfaI	CTAG	2 cut(s)	428, 434
BfmI	CTRYAG	1 cut(s)	444
BisI	GCNGC	3 cut(s)	57, 189, 233
BlsI	GCNGC	3 cut(s)	58, 190, 234
Bme18I	GGWCC	1 cut(s)	164
BmeT110I	CYCGRG	1 cut(s)	456
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	2 cut(s)	166, 519
BmsI	GCATC	1 cut(s)	18
Bpu10I	CCTNAGC	1 cut(s)	169
BsaJI	CCNNGG	2 cut(s)	258, 455
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
BseDI	CCNNGG	2 cut(s)	258, 455
BseGI	GGATG	3 cut(s)	204, 496, 538
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseRI	GAGGAG	4 cut(s)	65, 431, 500, 556
BseXI	GCAGC	1 cut(s)	219
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	218
Bsh1236I	CGCG	2 cut(s)	14, 198
BshFI	GGCC	2 cut(s)	147, 257
BsiHKCI	CYCGRG	1 cut(s)	456
BslI	CCNNNNNNNGG	1 cut(s)	49
BsnI	GGCC	2 cut(s)	147, 257
BsoBI	CYCGRG	1 cut(s)	456
Bsp68I	TCGCGA	2 cut(s)	14, 198
BspACI	CCGC	3 cut(s)	56, 189, 390
BspANI	GGCC	2 cut(s)	147, 257
BspFNI	CGCG	2 cut(s)	14, 198
BspLI	GGNNCC	2 cut(s)	166, 519
BspMAI	CTGCAG	1 cut(s)	448
BssECI	CCNNGG	2 cut(s)	258, 455
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	541
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	1 cut(s)	169
BstF5I	GGATG	3 cut(s)	204, 496, 538
BstFNI	CGCG	2 cut(s)	14, 198
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	444
BstUI	CGCG	2 cut(s)	14, 198
BstV1I	GCAGC	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	147, 257
BtgZI	GCGATG	2 cut(s)	74, 188
BtsCI	GGATG	3 cut(s)	204, 496, 538
BtuMI	TCGCGA	2 cut(s)	14, 198
Cac8I	GCNNGC	1 cut(s)	448
Cfr13I	GGNCC	1 cut(s)	164
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	8 cut(s)	147, 203, 241, 257, 293, 422, 427, 520
CviKI_1	RGCY	8 cut(s)	147, 203, 241, 257, 293, 422, 427, 520
DdeI	CTNAG	1 cut(s)	169
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	541
EarI	CTCTTC	1 cut(s)	541
Eco32I	GATATC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	456
EcoRV	GATATC	1 cut(s)	228
FaeI	CATG	1 cut(s)	32
FaiI	YATR	8 cut(s)	30, 186, 269, 275, 307, 360, 370, 561
FatI	CATG	1 cut(s)	28
Fnu4HI	GCNGC	3 cut(s)	57, 189, 233
FokI	GGATG	3 cut(s)	191, 503, 545
Fsp4HI	GCNGC	3 cut(s)	57, 189, 233
FspBI	CTAG	2 cut(s)	428, 434
GluI	GCNGC	3 cut(s)	57, 189, 233
GsaI	CCCAGC	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	147, 257
Hin1II	CATG	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	2 cut(s)	40, 366
Hpy188I	TCNGA	2 cut(s)	67, 217
Hpy188III	TCNNGA	4 cut(s)	13, 197, 434, 458
Hpy8I	GTNNAC	2 cut(s)	40, 366
Hpy99I	CGWCG	2 cut(s)	19, 71
HpyAV	CCTTC	2 cut(s)	124, 523
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4V	TGCA	2 cut(s)	235, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpyF3I	CTNAG	1 cut(s)	169
Hsp92II	CATG	1 cut(s)	32
LmnI	GCTCC	2 cut(s)	460, 517
LpnPI	CCDG	3 cut(s)	408, 432, 456
Lsp1109I	GCAGC	1 cut(s)	219
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	2 cut(s)	428, 434
MaeIII	GTNAC	3 cut(s)	104, 493, 509
MboII	GAAGA	5 cut(s)	292, 538, 558, 563, 566
MfeI	CAATTG	1 cut(s)	471
MluCI	AATT	3 cut(s)	153, 311, 471
MmeI	TCCRAC	1 cut(s)	90
MseI	TTAA	1 cut(s)	122
MslI	CAYNNNNRTG	2 cut(s)	45, 272
MunI	CAATTG	1 cut(s)	471
MvnI	CGCG	2 cut(s)	14, 198
MwoI	GCNNNNNNNGC	1 cut(s)	238
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	2 cut(s)	166, 519
NmeAIII	GCCGAG	1 cut(s)	283
NmuCI	GTSAC	2 cut(s)	104, 493
NruI	TCGCGA	2 cut(s)	14, 198
OliI	CACNNNNGTG	1 cut(s)	45
PkrI	GCNGC	3 cut(s)	58, 190, 234
PspFI	CCCAGC	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	166, 519
PspPI	GGNCC	1 cut(s)	164
PstI	CTGCAG	1 cut(s)	448
RruI	TCGCGA	2 cut(s)	14, 198
RseI	CAYNNNNRTG	2 cut(s)	45, 272
SaqAI	TTAA	1 cut(s)	122
SatI	GCNGC	3 cut(s)	57, 189, 233
Sau96I	GGNCC	1 cut(s)	164
SbfI	CCTGCAGG	1 cut(s)	448
SdaI	CCTGCAGG	1 cut(s)	448
SetI	ASST	6 cut(s)	100, 215, 243, 264, 305, 348
SfaNI	GCATC	1 cut(s)	18
SfcI	CTRYAG	1 cut(s)	444
SinI	GGWCC	1 cut(s)	164
SmiMI	CAYNNNNRTG	2 cut(s)	45, 272
Sse8387I	CCTGCAGG	1 cut(s)	448
Sse9I	AATT	3 cut(s)	153, 311, 471
SsiI	CCGC	3 cut(s)	56, 189, 390
SspMI	CTAG	2 cut(s)	428, 434
TaaI	ACNGT	1 cut(s)	71
TasI	AATT	3 cut(s)	153, 311, 471
TauI	GCSGC	2 cut(s)	59, 191
Tru1I	TTAA	1 cut(s)	122
Tru9I	TTAA	1 cut(s)	122
TseFI	GTSAC	2 cut(s)	104, 493
TseI	GCWGC	1 cut(s)	232
Tsp45I	GTSAC	2 cut(s)	104, 493
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	164
XbaI	TCTAGA	1 cut(s)	433
XspI	CTAG	2 cut(s)	428, 434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.